FF:12724-135G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005266 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008586;DRR009458;DRZ000883;DRZ002268;DRZ012233;DRZ013618 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000034,CL:0002322 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101581,FF:0000343,FF:0000350,FF:0000400,FF:0100669,FF:0000592 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12724-135G6 | |fonse_treatment_closure=FF:0000343,FF:0000592,FF:12724-135G6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12724-135G6 | |id=FF:12724-135G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000592 | ||
|is_obsolete= | |||
|library_id=CNhs12824 | |||
|library_id_phase_based=2:CNhs12824 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12724 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12724 | |||
|name=H9 Embryonic Stem cells, biol_rep2 (H9ES-2) | |name=H9 Embryonic Stem cells, biol_rep2 (H9ES-2) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12824,LSID972,release012,COMPLETED | |profile_hcage=CNhs12824,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=135 | |rna_box=135 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 55: | Line 76: | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id=135G6 | |rna_tube_id=135G6 | ||
|rna_weight_ug=7 | |rna_weight_ug=7 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=H9 | |sample_cell_line=H9 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Human ES cell differentiation to melanocyte | |sample_experimental_condition=Human ES cell differentiation to melanocyte | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.92172463991287e-292!GO:0043226;organelle;1.48906508007988e-244!GO:0043229;intracellular organelle;6.24944775078078e-244!GO:0043231;intracellular membrane-bound organelle;1.19282695664506e-239!GO:0043227;membrane-bound organelle;1.19282695664506e-239!GO:0005737;cytoplasm;1.67102397547842e-179!GO:0044422;organelle part;4.70099319042895e-156!GO:0044446;intracellular organelle part;1.87871051207295e-154!GO:0005634;nucleus;8.83221651048858e-123!GO:0044444;cytoplasmic part;3.82430565394642e-118!GO:0032991;macromolecular complex;3.1656991666875e-116!GO:0044238;primary metabolic process;2.81765284449806e-108!GO:0044237;cellular metabolic process;5.80466270029488e-108!GO:0043170;macromolecule metabolic process;4.28293784967535e-105!GO:0030529;ribonucleoprotein complex;4.32666365385844e-99!GO:0003723;RNA binding;1.21036067704574e-90!GO:0044428;nuclear part;2.08278088454065e-90!GO:0043233;organelle lumen;5.44925618783006e-84!GO:0031974;membrane-enclosed lumen;5.44925618783006e-84!GO:0005515;protein binding;9.21679399886312e-74!GO:0005739;mitochondrion;3.23762192536949e-71!GO:0043283;biopolymer metabolic process;1.24265574838355e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.33820126594748e-66!GO:0010467;gene expression;4.55633756557904e-64!GO:0006396;RNA processing;1.50085794070719e-61!GO:0016043;cellular component organization and biogenesis;5.55896717029363e-59!GO:0043234;protein complex;2.33335981853118e-58!GO:0005840;ribosome;3.85465175199209e-56!GO:0031981;nuclear lumen;4.67523282693511e-55!GO:0006412;translation;6.02617609105726e-54!GO:0006996;organelle organization and biogenesis;4.75146067767296e-50!GO:0003735;structural constituent of ribosome;8.03519661752397e-48!GO:0043228;non-membrane-bound organelle;2.00836017644676e-47!GO:0043232;intracellular non-membrane-bound organelle;2.00836017644676e-47!GO:0016071;mRNA metabolic process;2.56807076990937e-47!GO:0044429;mitochondrial part;2.59981139723911e-46!GO:0003676;nucleic acid binding;4.22791405354431e-45!GO:0019538;protein metabolic process;2.20203842684966e-44!GO:0006259;DNA metabolic process;1.12633797283771e-43!GO:0008380;RNA splicing;1.65803220333057e-43!GO:0044249;cellular biosynthetic process;7.25242376646162e-43!GO:0033279;ribosomal subunit;2.78619492007878e-42!GO:0009058;biosynthetic process;1.43293142630527e-41!GO:0031967;organelle envelope;1.68232554156491e-41!GO:0031975;envelope;3.80870936071659e-41!GO:0031090;organelle membrane;8.34751480519972e-41!GO:0033036;macromolecule localization;5.80413846643374e-40!GO:0006397;mRNA processing;6.09311964540614e-40!GO:0065003;macromolecular complex assembly;1.13717916093252e-39!GO:0015031;protein transport;1.58376654256186e-39!GO:0009059;macromolecule biosynthetic process;4.18187546249538e-39!GO:0044267;cellular protein metabolic process;1.30801274292306e-38!GO:0044260;cellular macromolecule metabolic process;2.16985835002234e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.36873540026788e-37!GO:0022607;cellular component assembly;5.05338275886653e-37!GO:0046907;intracellular transport;1.20624828262915e-35!GO:0016070;RNA metabolic process;4.22320931240773e-35!GO:0008104;protein localization;4.36093060437563e-35!GO:0045184;establishment of protein localization;1.02861258800647e-34!GO:0005829;cytosol;5.25356235197358e-34!GO:0005654;nucleoplasm;2.51410761002781e-32!GO:0007049;cell cycle;5.57767936259588e-32!GO:0005681;spliceosome;6.89137317918944e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.42406046477002e-30!GO:0000166;nucleotide binding;3.82372224319426e-30!GO:0005740;mitochondrial envelope;3.78209491786944e-28!GO:0019866;organelle inner membrane;5.09708505426788e-28!GO:0005694;chromosome;1.45752142807887e-27!GO:0006886;intracellular protein transport;1.94402632582463e-27!GO:0044451;nucleoplasm part;2.55612517472753e-26!GO:0031966;mitochondrial membrane;7.32345516843925e-26!GO:0005743;mitochondrial inner membrane;8.56984465813127e-26!GO:0051649;establishment of cellular localization;2.63764088232846e-25!GO:0044427;chromosomal part;6.07188875701532e-25!GO:0044445;cytosolic part;1.38100818781254e-24!GO:0051276;chromosome organization and biogenesis;1.53929573850475e-24!GO:0022402;cell cycle process;2.76786483852349e-24!GO:0006974;response to DNA damage stimulus;2.80443829918238e-24!GO:0005730;nucleolus;3.43762873671879e-24!GO:0051641;cellular localization;4.37437743303469e-24!GO:0000278;mitotic cell cycle;2.62217141494892e-23!GO:0044455;mitochondrial membrane part;5.43260480344047e-22!GO:0006119;oxidative phosphorylation;5.74507599343357e-22!GO:0015934;large ribosomal subunit;8.1135074318563e-22!GO:0031980;mitochondrial lumen;8.4986131870178e-22!GO:0005759;mitochondrial matrix;8.4986131870178e-22!GO:0015935;small ribosomal subunit;1.73616933488346e-21!GO:0016462;pyrophosphatase activity;4.58340355906038e-21!GO:0016874;ligase activity;5.78175484886092e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.08215730402856e-21!GO:0022618;protein-RNA complex assembly;9.8302068476052e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17127026556245e-20!GO:0022403;cell cycle phase;2.90606293848285e-20!GO:0000087;M phase of mitotic cell cycle;4.98937202496736e-20!GO:0032553;ribonucleotide binding;5.67137623784366e-20!GO:0032555;purine ribonucleotide binding;5.67137623784366e-20!GO:0017111;nucleoside-triphosphatase activity;6.45116888295629e-20!GO:0007067;mitosis;1.17329240934782e-19!GO:0044265;cellular macromolecule catabolic process;1.27806321931326e-19!GO:0006281;DNA repair;1.39931878556264e-19!GO:0006512;ubiquitin cycle;4.45710132498166e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;6.45775978615793e-19!GO:0017076;purine nucleotide binding;7.34264180719812e-19!GO:0051301;cell division;2.52709213722936e-18!GO:0006323;DNA packaging;2.9789942046388e-18!GO:0006260;DNA replication;8.22442466255616e-18!GO:0000279;M phase;8.6143890502248e-18!GO:0043285;biopolymer catabolic process;9.27962819406861e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.03931099272532e-17!GO:0006457;protein folding;2.16823752489081e-17!GO:0008135;translation factor activity, nucleic acid binding;2.21811001177872e-17!GO:0019941;modification-dependent protein catabolic process;3.33747261932927e-17!GO:0043632;modification-dependent macromolecule catabolic process;3.33747261932927e-17!GO:0009057;macromolecule catabolic process;3.85839666627347e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.93122766431574e-17!GO:0042254;ribosome biogenesis and assembly;4.97583162499453e-17!GO:0044257;cellular protein catabolic process;5.26355271036331e-17!GO:0005524;ATP binding;7.92197941587159e-17!GO:0005746;mitochondrial respiratory chain;8.73857468841664e-17!GO:0032559;adenyl ribonucleotide binding;1.33801435489817e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.85587081939965e-16!GO:0000375;RNA splicing, via transesterification reactions;2.85587081939965e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.85587081939965e-16!GO:0005761;mitochondrial ribosome;3.13941826519177e-16!GO:0000313;organellar ribosome;3.13941826519177e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.91107768035583e-16!GO:0003954;NADH dehydrogenase activity;3.91107768035583e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.91107768035583e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.65339106155069e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.8181887162914e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.07709806417396e-15!GO:0012505;endomembrane system;1.46544273614922e-15!GO:0030554;adenyl nucleotide binding;2.33057972485975e-15!GO:0031965;nuclear membrane;2.41768904122633e-15!GO:0048770;pigment granule;2.56764010152239e-15!GO:0042470;melanosome;2.56764010152239e-15!GO:0030163;protein catabolic process;3.09683173495752e-15!GO:0009719;response to endogenous stimulus;5.06879915225466e-15!GO:0044248;cellular catabolic process;7.0853189215958e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.7177279373663e-14!GO:0008134;transcription factor binding;2.87815210706237e-14!GO:0005635;nuclear envelope;3.3747461314178e-14!GO:0044453;nuclear membrane part;3.52989881650488e-14!GO:0016604;nuclear body;3.71610718044296e-14!GO:0043412;biopolymer modification;4.69582260073291e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.07971695539423e-14!GO:0042773;ATP synthesis coupled electron transport;6.07971695539423e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.32965257668514e-14!GO:0045271;respiratory chain complex I;6.32965257668514e-14!GO:0005747;mitochondrial respiratory chain complex I;6.32965257668514e-14!GO:0006605;protein targeting;7.56927224895181e-14!GO:0005643;nuclear pore;9.74075600217642e-14!GO:0051082;unfolded protein binding;1.17040593026672e-13!GO:0006403;RNA localization;1.71658722015376e-13!GO:0005794;Golgi apparatus;1.73811879028571e-13!GO:0006399;tRNA metabolic process;1.86461982374144e-13!GO:0000785;chromatin;2.0730263647661e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.19374727713769e-13!GO:0050657;nucleic acid transport;4.76402491543515e-13!GO:0051236;establishment of RNA localization;4.76402491543515e-13!GO:0050658;RNA transport;4.76402491543515e-13!GO:0006413;translational initiation;5.76532663361922e-13!GO:0004386;helicase activity;7.53866676634496e-13!GO:0003743;translation initiation factor activity;1.7310349230152e-12!GO:0051186;cofactor metabolic process;2.06218678934349e-12!GO:0065004;protein-DNA complex assembly;2.94743538612989e-12!GO:0006446;regulation of translational initiation;3.36078127441178e-12!GO:0016072;rRNA metabolic process;3.68483729325777e-12!GO:0006364;rRNA processing;4.43151687408841e-12!GO:0016607;nuclear speck;5.23154047366167e-12!GO:0042623;ATPase activity, coupled;6.17976641552357e-12!GO:0016887;ATPase activity;8.05463465587345e-12!GO:0015630;microtubule cytoskeleton;8.17833908780575e-12!GO:0006464;protein modification process;9.12833634179252e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.24070806683366e-11!GO:0048193;Golgi vesicle transport;1.68636383415758e-11!GO:0006333;chromatin assembly or disassembly;2.23845712620172e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48905361833165e-11!GO:0043687;post-translational protein modification;2.65541121512239e-11!GO:0050794;regulation of cellular process;3.4045339376773e-11!GO:0006461;protein complex assembly;3.8059119568196e-11!GO:0051028;mRNA transport;3.99852553765404e-11!GO:0065002;intracellular protein transport across a membrane;4.26393765593274e-11!GO:0006732;coenzyme metabolic process;7.1543100518358e-11!GO:0008026;ATP-dependent helicase activity;8.22512651342836e-11!GO:0008565;protein transporter activity;8.82408963244951e-11!GO:0006913;nucleocytoplasmic transport;9.86555381913983e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.97023941630181e-11!GO:0004812;aminoacyl-tRNA ligase activity;9.97023941630181e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.97023941630181e-11!GO:0051726;regulation of cell cycle;1.61903956425213e-10!GO:0016568;chromatin modification;1.6914670685226e-10!GO:0000074;regulation of progression through cell cycle;1.82168699279869e-10!GO:0046930;pore complex;2.00161247065906e-10!GO:0043038;amino acid activation;2.6366544768683e-10!GO:0006418;tRNA aminoacylation for protein translation;2.6366544768683e-10!GO:0043039;tRNA aminoacylation;2.6366544768683e-10!GO:0051169;nuclear transport;2.72473498866355e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.39667411052099e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.29579554704771e-10!GO:0019222;regulation of metabolic process;5.28439840870102e-10!GO:0006261;DNA-dependent DNA replication;5.7616840907879e-10!GO:0016740;transferase activity;9.22784647119625e-10!GO:0016192;vesicle-mediated transport;1.0761619931654e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.01590518983751e-09!GO:0005783;endoplasmic reticulum;2.30843659654317e-09!GO:0000775;chromosome, pericentric region;2.340864398695e-09!GO:0008639;small protein conjugating enzyme activity;2.86878783035627e-09!GO:0004842;ubiquitin-protein ligase activity;5.54085453668349e-09!GO:0006366;transcription from RNA polymerase II promoter;7.77189629668546e-09!GO:0009055;electron carrier activity;7.89481994802257e-09!GO:0019787;small conjugating protein ligase activity;8.00229549010859e-09!GO:0009259;ribonucleotide metabolic process;9.43126118383033e-09!GO:0031497;chromatin assembly;9.43126118383033e-09!GO:0006334;nucleosome assembly;1.00376524337952e-08!GO:0016779;nucleotidyltransferase activity;1.31105790092672e-08!GO:0006163;purine nucleotide metabolic process;1.32191551542274e-08!GO:0006164;purine nucleotide biosynthetic process;1.6836658299467e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75844195778544e-08!GO:0003712;transcription cofactor activity;2.23109783350993e-08!GO:0009056;catabolic process;2.65745455727861e-08!GO:0009260;ribonucleotide biosynthetic process;2.70986881846001e-08!GO:0050789;regulation of biological process;2.86069321766558e-08!GO:0003697;single-stranded DNA binding;3.0312431008684e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.08202225139252e-08!GO:0043566;structure-specific DNA binding;4.35221466975938e-08!GO:0017038;protein import;5.7592562504563e-08!GO:0005819;spindle;6.74807342427272e-08!GO:0005793;ER-Golgi intermediate compartment;1.07008519333697e-07!GO:0009060;aerobic respiration;1.07150865607817e-07!GO:0006350;transcription;1.19887271727815e-07!GO:0009150;purine ribonucleotide metabolic process;1.28985732241962e-07!GO:0016881;acid-amino acid ligase activity;1.51388636534182e-07!GO:0031323;regulation of cellular metabolic process;1.5460337591578e-07!GO:0007051;spindle organization and biogenesis;1.5460337591578e-07!GO:0003899;DNA-directed RNA polymerase activity;1.62235371627113e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.69047884131363e-07!GO:0015986;ATP synthesis coupled proton transport;1.71037715457743e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.71037715457743e-07!GO:0007005;mitochondrion organization and biogenesis;1.79661241140198e-07!GO:0007010;cytoskeleton organization and biogenesis;2.01206424452986e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.18911132745674e-07!GO:0045333;cellular respiration;2.19227490069947e-07!GO:0000245;spliceosome assembly;2.53033847654493e-07!GO:0051188;cofactor biosynthetic process;2.59505552603213e-07!GO:0032446;protein modification by small protein conjugation;2.69262496793118e-07!GO:0043623;cellular protein complex assembly;3.37820216376237e-07!GO:0019829;cation-transporting ATPase activity;3.44338432542747e-07!GO:0005657;replication fork;4.38397039568539e-07!GO:0044432;endoplasmic reticulum part;4.77486932036884e-07!GO:0008094;DNA-dependent ATPase activity;5.15374459725004e-07!GO:0016567;protein ubiquitination;7.17260298726665e-07!GO:0051246;regulation of protein metabolic process;7.76426891518083e-07!GO:0048475;coated membrane;9.62293970712513e-07!GO:0030117;membrane coat;9.62293970712513e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.5111137968949e-06!GO:0009108;coenzyme biosynthetic process;1.53208957403619e-06!GO:0003724;RNA helicase activity;1.76606110550414e-06!GO:0006099;tricarboxylic acid cycle;1.80223377444529e-06!GO:0046356;acetyl-CoA catabolic process;1.80223377444529e-06!GO:0010468;regulation of gene expression;1.8542542911624e-06!GO:0045259;proton-transporting ATP synthase complex;2.06213248550721e-06!GO:0012501;programmed cell death;2.14772606271408e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.16969817538326e-06!GO:0003924;GTPase activity;2.18413878889956e-06!GO:0005667;transcription factor complex;2.25875684572368e-06!GO:0009117;nucleotide metabolic process;2.25875684572368e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.28445859781872e-06!GO:0006084;acetyl-CoA metabolic process;2.73556786322811e-06!GO:0006915;apoptosis;3.10337467031846e-06!GO:0006793;phosphorus metabolic process;3.10337467031846e-06!GO:0006796;phosphate metabolic process;3.10337467031846e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.45122156871319e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.45122156871319e-06!GO:0007017;microtubule-based process;3.60320912141969e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.72310286331048e-06!GO:0005813;centrosome;4.11190165693687e-06!GO:0006754;ATP biosynthetic process;4.11190165693687e-06!GO:0006753;nucleoside phosphate metabolic process;4.11190165693687e-06!GO:0051329;interphase of mitotic cell cycle;4.19886311457864e-06!GO:0005874;microtubule;4.24940477187617e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.74429643492836e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.8256857982853e-06!GO:0009141;nucleoside triphosphate metabolic process;5.31992332197112e-06!GO:0031988;membrane-bound vesicle;5.48454052256549e-06!GO:0032774;RNA biosynthetic process;5.73121234886851e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.85377163232791e-06!GO:0005525;GTP binding;6.25029944897213e-06!GO:0051325;interphase;6.43577179217731e-06!GO:0000075;cell cycle checkpoint;6.43577179217731e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.01932532456169e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.01932532456169e-06!GO:0006351;transcription, DNA-dependent;7.16629557738233e-06!GO:0031982;vesicle;7.2190850527396e-06!GO:0006752;group transfer coenzyme metabolic process;7.48852769078548e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.49072090388538e-06!GO:0000314;organellar small ribosomal subunit;7.98489755635555e-06!GO:0005763;mitochondrial small ribosomal subunit;7.98489755635555e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.12287703770225e-06!GO:0046034;ATP metabolic process;8.2680685243933e-06!GO:0005762;mitochondrial large ribosomal subunit;9.04438929443378e-06!GO:0000315;organellar large ribosomal subunit;9.04438929443378e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.1630190540759e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.1630190540759e-06!GO:0005815;microtubule organizing center;9.25616177541591e-06!GO:0016363;nuclear matrix;1.01997026492696e-05!GO:0044431;Golgi apparatus part;1.11414421600299e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.11735933931021e-05!GO:0005768;endosome;1.14773831823569e-05!GO:0031410;cytoplasmic vesicle;1.23019675349728e-05!GO:0008219;cell death;1.51171020015275e-05!GO:0016265;death;1.51171020015275e-05!GO:0051427;hormone receptor binding;1.5280351013159e-05!GO:0051168;nuclear export;1.55762175261132e-05!GO:0000776;kinetochore;1.82004105041345e-05!GO:0008168;methyltransferase activity;1.92462851299822e-05!GO:0009109;coenzyme catabolic process;1.99184425699091e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;2.00027721639342e-05!GO:0007059;chromosome segregation;2.19052683320966e-05!GO:0030120;vesicle coat;2.20059588548262e-05!GO:0030662;coated vesicle membrane;2.20059588548262e-05!GO:0006613;cotranslational protein targeting to membrane;2.2827739404946e-05!GO:0044452;nucleolar part;2.32680511968355e-05!GO:0051187;cofactor catabolic process;2.52471369587421e-05!GO:0003682;chromatin binding;2.57746968597286e-05!GO:0051170;nuclear import;2.60997973273312e-05!GO:0016853;isomerase activity;3.05734489959965e-05!GO:0035257;nuclear hormone receptor binding;3.37685999111697e-05!GO:0006402;mRNA catabolic process;3.45629361278333e-05!GO:0003729;mRNA binding;3.98395834764451e-05!GO:0006401;RNA catabolic process;4.24445619815963e-05!GO:0004298;threonine endopeptidase activity;4.74073145110991e-05!GO:0006383;transcription from RNA polymerase III promoter;4.89256139579638e-05!GO:0043021;ribonucleoprotein binding;5.00077928859997e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.11406930948984e-05!GO:0032561;guanyl ribonucleotide binding;5.20556930784715e-05!GO:0019001;guanyl nucleotide binding;5.20556930784715e-05!GO:0016310;phosphorylation;5.63255742830067e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.75408727219314e-05!GO:0005789;endoplasmic reticulum membrane;6.70295075255982e-05!GO:0008186;RNA-dependent ATPase activity;6.77347149215145e-05!GO:0006606;protein import into nucleus;7.07332979419543e-05!GO:0003690;double-stranded DNA binding;7.09665420102578e-05!GO:0006520;amino acid metabolic process;7.16921935874323e-05!GO:0000151;ubiquitin ligase complex;7.19214327473221e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.86619333961353e-05!GO:0016859;cis-trans isomerase activity;9.09643552903718e-05!GO:0008033;tRNA processing;9.40164493223159e-05!GO:0000139;Golgi membrane;9.62797374613315e-05!GO:0006302;double-strand break repair;9.66379833658415e-05!GO:0031252;leading edge;9.77532982040307e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000105579737323198!GO:0051052;regulation of DNA metabolic process;0.000114911395797501!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000118627477679373!GO:0031324;negative regulation of cellular metabolic process;0.000119105464697336!GO:0000059;protein import into nucleus, docking;0.000128350373921161!GO:0007093;mitotic cell cycle checkpoint;0.000138667942344188!GO:0003677;DNA binding;0.000139162914911544!GO:0030880;RNA polymerase complex;0.000152506608107309!GO:0043681;protein import into mitochondrion;0.000165164280318042!GO:0045449;regulation of transcription;0.000170941058566196!GO:0005770;late endosome;0.000172615474639511!GO:0051087;chaperone binding;0.00018200305993816!GO:0003678;DNA helicase activity;0.000214485554853107!GO:0004004;ATP-dependent RNA helicase activity;0.000215001018729476!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000219801677375763!GO:0006612;protein targeting to membrane;0.000234488287754397!GO:0048523;negative regulation of cellular process;0.000237871192477797!GO:0006338;chromatin remodeling;0.000244338039317966!GO:0005769;early endosome;0.000265693483053907!GO:0007264;small GTPase mediated signal transduction;0.00026994427783937!GO:0015631;tubulin binding;0.00026994427783937!GO:0045454;cell redox homeostasis;0.000282822952143051!GO:0009165;nucleotide biosynthetic process;0.000283447991510633!GO:0005798;Golgi-associated vesicle;0.000290865564643675!GO:0000786;nucleosome;0.000320594697943475!GO:0007052;mitotic spindle organization and biogenesis;0.000324258151993859!GO:0044440;endosomal part;0.000337046941251485!GO:0010008;endosome membrane;0.000337046941251485!GO:0032259;methylation;0.000338265813010232!GO:0007006;mitochondrial membrane organization and biogenesis;0.000339501044824848!GO:0003713;transcription coactivator activity;0.000340067313191167!GO:0006414;translational elongation;0.000365139758104638!GO:0006730;one-carbon compound metabolic process;0.000386518846773977!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000387766697916721!GO:0000428;DNA-directed RNA polymerase complex;0.000387766697916721!GO:0043414;biopolymer methylation;0.000387766697916721!GO:0006839;mitochondrial transport;0.000406433866725061!GO:0006352;transcription initiation;0.000412058117769727!GO:0006541;glutamine metabolic process;0.000420400022871095!GO:0045786;negative regulation of progression through cell cycle;0.000432662067645148!GO:0005684;U2-dependent spliceosome;0.000439490281618024!GO:0008654;phospholipid biosynthetic process;0.000444520935218707!GO:0042802;identical protein binding;0.000447029683942211!GO:0009892;negative regulation of metabolic process;0.000464348925886319!GO:0065007;biological regulation;0.000498410020363411!GO:0007088;regulation of mitosis;0.000499146618040689!GO:0048471;perinuclear region of cytoplasm;0.000516950708418823!GO:0003684;damaged DNA binding;0.00052951935163483!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000556110831648164!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000567190757651019!GO:0051920;peroxiredoxin activity;0.000577024275360713!GO:0051252;regulation of RNA metabolic process;0.000604046419958649!GO:0009112;nucleobase metabolic process;0.000662425569772152!GO:0006355;regulation of transcription, DNA-dependent;0.000702161330507223!GO:0032508;DNA duplex unwinding;0.000713804348122303!GO:0032392;DNA geometric change;0.000713804348122303!GO:0008250;oligosaccharyl transferase complex;0.000830219537687799!GO:0015980;energy derivation by oxidation of organic compounds;0.000860600172508104!GO:0030036;actin cytoskeleton organization and biogenesis;0.0008774083301528!GO:0016272;prefoldin complex;0.000917904980428196!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000922755274302766!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000922755274302766!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000922755274302766!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000938223948392446!GO:0000228;nuclear chromosome;0.000958355197699614!GO:0016251;general RNA polymerase II transcription factor activity;0.000999120292694405!GO:0006310;DNA recombination;0.00103816235468872!GO:0016564;transcription repressor activity;0.00104076723917233!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00106177869899084!GO:0005048;signal sequence binding;0.0010829578209729!GO:0006144;purine base metabolic process;0.00109547552574766!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00109920623814005!GO:0006405;RNA export from nucleus;0.00111582973548439!GO:0004527;exonuclease activity;0.00113064533326453!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00117488619160883!GO:0006626;protein targeting to mitochondrion;0.001185370419907!GO:0048487;beta-tubulin binding;0.00122143053407912!GO:0032200;telomere organization and biogenesis;0.00122868080350175!GO:0000723;telomere maintenance;0.00122868080350175!GO:0043488;regulation of mRNA stability;0.0013439687554702!GO:0043487;regulation of RNA stability;0.0013439687554702!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00142588477427851!GO:0045045;secretory pathway;0.0015264623834505!GO:0006268;DNA unwinding during replication;0.00155995138074628!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00156536476153385!GO:0000049;tRNA binding;0.00156853626486108!GO:0016563;transcription activator activity;0.0015920762158158!GO:0005788;endoplasmic reticulum lumen;0.00159837749938404!GO:0003714;transcription corepressor activity;0.00161240836532148!GO:0030867;rough endoplasmic reticulum membrane;0.0017801193040936!GO:0043069;negative regulation of programmed cell death;0.00182673992922152!GO:0016481;negative regulation of transcription;0.00182923171593599!GO:0040029;regulation of gene expression, epigenetic;0.00188024656538334!GO:0033116;ER-Golgi intermediate compartment membrane;0.00191870113896258!GO:0005669;transcription factor TFIID complex;0.00195285142161165!GO:0008092;cytoskeletal protein binding;0.0019870283089702!GO:0008287;protein serine/threonine phosphatase complex;0.00201326597776517!GO:0019843;rRNA binding;0.00204300914354839!GO:0006284;base-excision repair;0.00210118598161687!GO:0000159;protein phosphatase type 2A complex;0.00213946928880882!GO:0043066;negative regulation of apoptosis;0.00214749866680411!GO:0006519;amino acid and derivative metabolic process;0.0021858714593566!GO:0043596;nuclear replication fork;0.00220670787181149!GO:0030118;clathrin coat;0.00228255926993686!GO:0005876;spindle microtubule;0.00228487195925636!GO:0004576;oligosaccharyl transferase activity;0.0023014363908229!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00231369866077684!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00231369866077684!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00231369866077684!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00236359345033727!GO:0048519;negative regulation of biological process;0.00241369691118315!GO:0016787;hydrolase activity;0.00246755857277309!GO:0042981;regulation of apoptosis;0.0025500361427746!GO:0006270;DNA replication initiation;0.00256467512355609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00263034412213083!GO:0005637;nuclear inner membrane;0.00263143630330945!GO:0043067;regulation of programmed cell death;0.00269183893687489!GO:0008601;protein phosphatase type 2A regulator activity;0.00276722781398799!GO:0044454;nuclear chromosome part;0.00288500822446858!GO:0030029;actin filament-based process;0.00292512214669295!GO:0048500;signal recognition particle;0.00295496126922897!GO:0005741;mitochondrial outer membrane;0.00301196393582659!GO:0051539;4 iron, 4 sulfur cluster binding;0.00308687295576348!GO:0009116;nucleoside metabolic process;0.00309546581641752!GO:0008022;protein C-terminus binding;0.00310083434028919!GO:0005758;mitochondrial intermembrane space;0.00310760199199687!GO:0006611;protein export from nucleus;0.00313455249418787!GO:0003711;transcription elongation regulator activity;0.00313455249418787!GO:0008652;amino acid biosynthetic process;0.00313455249418787!GO:0019899;enzyme binding;0.00333318765197375!GO:0006275;regulation of DNA replication;0.00347379273779763!GO:0005885;Arp2/3 protein complex;0.00367738626024276!GO:0044262;cellular carbohydrate metabolic process;0.00386131369555404!GO:0006595;polyamine metabolic process;0.0038642413866739!GO:0000792;heterochromatin;0.00386933458781826!GO:0031072;heat shock protein binding;0.00391068780773383!GO:0046483;heterocycle metabolic process;0.00391223436101145!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00393869466791269!GO:0000922;spindle pole;0.00400549922903493!GO:0030521;androgen receptor signaling pathway;0.00402444783285593!GO:0000209;protein polyubiquitination;0.00410478468657011!GO:0008312;7S RNA binding;0.00421784773887438!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00422022231917322!GO:0015002;heme-copper terminal oxidase activity;0.00422022231917322!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00422022231917322!GO:0004129;cytochrome-c oxidase activity;0.00422022231917322!GO:0030658;transport vesicle membrane;0.00467488811249885!GO:0030119;AP-type membrane coat adaptor complex;0.00469940297174784!GO:0030027;lamellipodium;0.00475988826437858!GO:0016584;nucleosome positioning;0.0048229643435339!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00491387480109235!GO:0003746;translation elongation factor activity;0.00493558598226884!GO:0006916;anti-apoptosis;0.00516627844149234!GO:0035258;steroid hormone receptor binding;0.0052473359193729!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00531417740741483!GO:0018196;peptidyl-asparagine modification;0.00531417740741483!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00531417740741483!GO:0031577;spindle checkpoint;0.00534162169452108!GO:0030134;ER to Golgi transport vesicle;0.0053745856442165!GO:0004518;nuclease activity;0.00537798590197178!GO:0000781;chromosome, telomeric region;0.00556538405232457!GO:0042393;histone binding;0.00570364591510444!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00574269323127991!GO:0030133;transport vesicle;0.00597987446482468!GO:0031970;organelle envelope lumen;0.00598210928515749!GO:0046474;glycerophospholipid biosynthetic process;0.00598252340443844!GO:0004674;protein serine/threonine kinase activity;0.00601579613212103!GO:0007004;telomere maintenance via telomerase;0.00608530785569804!GO:0051789;response to protein stimulus;0.00609332372052475!GO:0006986;response to unfolded protein;0.00609332372052475!GO:0000725;recombinational repair;0.00614573458966015!GO:0000724;double-strand break repair via homologous recombination;0.00614573458966015!GO:0008139;nuclear localization sequence binding;0.00616367861746125!GO:0000178;exosome (RNase complex);0.00618956792321427!GO:0031968;organelle outer membrane;0.00644649409025485!GO:0005905;coated pit;0.0065437012141393!GO:0016126;sterol biosynthetic process;0.00672586938603542!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00674916626116992!GO:0045047;protein targeting to ER;0.00674916626116992!GO:0030131;clathrin adaptor complex;0.00690469747613488!GO:0044450;microtubule organizing center part;0.00712167765662401!GO:0042770;DNA damage response, signal transduction;0.00721433384103106!GO:0051287;NAD binding;0.00751873879002653!GO:0009303;rRNA transcription;0.00758442083646134!GO:0005791;rough endoplasmic reticulum;0.00780296107517566!GO:0009451;RNA modification;0.00785760329424934!GO:0004003;ATP-dependent DNA helicase activity;0.00788050944268333!GO:0043601;nuclear replisome;0.00788050944268333!GO:0030894;replisome;0.00788050944268333!GO:0001726;ruffle;0.00793952055668654!GO:0000819;sister chromatid segregation;0.00794470709872!GO:0006007;glucose catabolic process;0.00795900888874689!GO:0043022;ribosome binding;0.0080181619583342!GO:0000070;mitotic sister chromatid segregation;0.00804369654768408!GO:0031124;mRNA 3'-end processing;0.0080969911186942!GO:0005832;chaperonin-containing T-complex;0.00830853115679737!GO:0019867;outer membrane;0.00835900556577673!GO:0004532;exoribonuclease activity;0.00846687806275738!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00846687806275738!GO:0008017;microtubule binding;0.00849578461024216!GO:0006891;intra-Golgi vesicle-mediated transport;0.00857478190188197!GO:0008180;signalosome;0.00872511797477468!GO:0000339;RNA cap binding;0.0087977245085913!GO:0019783;small conjugating protein-specific protease activity;0.0088518825570721!GO:0016311;dephosphorylation;0.00901738004786155!GO:0006289;nucleotide-excision repair;0.00953756002936305!GO:0031570;DNA integrity checkpoint;0.00973264510982941!GO:0030660;Golgi-associated vesicle membrane;0.00975460206425477!GO:0000096;sulfur amino acid metabolic process;0.00998587736373559!GO:0006378;mRNA polyadenylation;0.0102601772314919!GO:0007021;tubulin folding;0.0103161220479563!GO:0008276;protein methyltransferase activity;0.0111544616763911!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0113734612856068!GO:0006278;RNA-dependent DNA replication;0.0121256667126603!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0122111796151657!GO:0030127;COPII vesicle coat;0.0123126633556147!GO:0012507;ER to Golgi transport vesicle membrane;0.0123126633556147!GO:0016585;chromatin remodeling complex;0.012325842999932!GO:0045892;negative regulation of transcription, DNA-dependent;0.0124571330401134!GO:0046467;membrane lipid biosynthetic process;0.0125377814147493!GO:0051540;metal cluster binding;0.0134139915964256!GO:0051536;iron-sulfur cluster binding;0.0134139915964256!GO:0005938;cell cortex;0.0136936720846567!GO:0065009;regulation of a molecular function;0.0141488126309226!GO:0009064;glutamine family amino acid metabolic process;0.0141603703510601!GO:0004843;ubiquitin-specific protease activity;0.0141610124319508!GO:0000082;G1/S transition of mitotic cell cycle;0.0148093600727662!GO:0051656;establishment of organelle localization;0.0152075321143172!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0152075614886467!GO:0006417;regulation of translation;0.0154529683857516!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0154529683857516!GO:0030663;COPI coated vesicle membrane;0.0156641622720632!GO:0030126;COPI vesicle coat;0.0156641622720632!GO:0006376;mRNA splice site selection;0.0156815939765983!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0156815939765983!GO:0030496;midbody;0.0159352966548784!GO:0019752;carboxylic acid metabolic process;0.0160625193341456!GO:0030145;manganese ion binding;0.0172511742222294!GO:0050662;coenzyme binding;0.0173362054739808!GO:0016791;phosphoric monoester hydrolase activity;0.0176472181927973!GO:0030518;steroid hormone receptor signaling pathway;0.0178224332241292!GO:0005862;muscle thin filament tropomyosin;0.0181286655971144!GO:0016407;acetyltransferase activity;0.0185257429644344!GO:0006082;organic acid metabolic process;0.0185355843136043!GO:0006790;sulfur metabolic process;0.0190416716538917!GO:0000793;condensed chromosome;0.0191536920258537!GO:0006400;tRNA modification;0.0191903842436574!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0192292886262407!GO:0004221;ubiquitin thiolesterase activity;0.0197429465673267!GO:0017166;vinculin binding;0.0198001665055973!GO:0008408;3'-5' exonuclease activity;0.0198001665055973!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0201740419674374!GO:0010257;NADH dehydrogenase complex assembly;0.0201740419674374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0201740419674374!GO:0006650;glycerophospholipid metabolic process;0.020451105207566!GO:0043284;biopolymer biosynthetic process;0.0205787093033187!GO:0008632;apoptotic program;0.0206076872812581!GO:0005996;monosaccharide metabolic process;0.0206582562483572!GO:0004722;protein serine/threonine phosphatase activity;0.0212913297629092!GO:0005663;DNA replication factor C complex;0.0214372302892576!GO:0009308;amine metabolic process;0.0219374296477406!GO:0006695;cholesterol biosynthetic process;0.0219374296477406!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220147125783925!GO:0008270;zinc ion binding;0.0221482735084143!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.022241428413558!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.022363132798534!GO:0001725;stress fiber;0.0223678573470746!GO:0032432;actin filament bundle;0.0223678573470746!GO:0000123;histone acetyltransferase complex;0.0224960092963797!GO:0043624;cellular protein complex disassembly;0.0226483337207973!GO:0030659;cytoplasmic vesicle membrane;0.0229653820854358!GO:0022890;inorganic cation transmembrane transporter activity;0.0231906521699265!GO:0050178;phenylpyruvate tautomerase activity;0.0232369967277814!GO:0045947;negative regulation of translational initiation;0.0236743609180785!GO:0006220;pyrimidine nucleotide metabolic process;0.0238945858081613!GO:0012506;vesicle membrane;0.0241153018756876!GO:0042026;protein refolding;0.0242340621063887!GO:0019904;protein domain specific binding;0.0245664869982308!GO:0046966;thyroid hormone receptor binding;0.0249443074949057!GO:0032984;macromolecular complex disassembly;0.0253344729805463!GO:0000726;non-recombinational repair;0.0255095015552283!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0258084241805585!GO:0030176;integral to endoplasmic reticulum membrane;0.0260592523309864!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0261576206318712!GO:0045039;protein import into mitochondrial inner membrane;0.0261576206318712!GO:0016044;membrane organization and biogenesis;0.0269651729727063!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0270937317207104!GO:0016835;carbon-oxygen lyase activity;0.0271454244414897!GO:0008629;induction of apoptosis by intracellular signals;0.0271520565390583!GO:0046365;monosaccharide catabolic process;0.0276915539135856!GO:0005773;vacuole;0.0277184935537128!GO:0000910;cytokinesis;0.0280399107738617!GO:0051098;regulation of binding;0.0281333560037517!GO:0035267;NuA4 histone acetyltransferase complex;0.0281958163927672!GO:0009124;nucleoside monophosphate biosynthetic process;0.0282213589089997!GO:0009123;nucleoside monophosphate metabolic process;0.0282213589089997!GO:0044433;cytoplasmic vesicle part;0.0286668168185502!GO:0050749;apolipoprotein E receptor binding;0.0286707178967179!GO:0015992;proton transport;0.0286707178967179!GO:0008213;protein amino acid alkylation;0.028749520078663!GO:0006479;protein amino acid methylation;0.028749520078663!GO:0031123;RNA 3'-end processing;0.028956484784382!GO:0009113;purine base biosynthetic process;0.0289862308323506!GO:0019318;hexose metabolic process;0.0290252295412955!GO:0005652;nuclear lamina;0.0291033290448849!GO:0008538;proteasome activator activity;0.029774736554195!GO:0042769;DNA damage response, detection of DNA damage;0.0302059623086125!GO:0046489;phosphoinositide biosynthetic process;0.0303722081316396!GO:0046426;negative regulation of JAK-STAT cascade;0.0305612146548957!GO:0005875;microtubule associated complex;0.0306233867848675!GO:0009081;branched chain family amino acid metabolic process;0.0308607819466328!GO:0006818;hydrogen transport;0.0310544416164286!GO:0043189;H4/H2A histone acetyltransferase complex;0.0312278025942039!GO:0000097;sulfur amino acid biosynthetic process;0.031362883187313!GO:0000077;DNA damage checkpoint;0.0315937341978797!GO:0000086;G2/M transition of mitotic cell cycle;0.0318574729417526!GO:0051101;regulation of DNA binding;0.0319747721202107!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0319804452986305!GO:0006607;NLS-bearing substrate import into nucleus;0.0322900767731585!GO:0016491;oxidoreductase activity;0.0327811611961438!GO:0008097;5S rRNA binding;0.0328287218666718!GO:0005784;translocon complex;0.0334784020163079!GO:0007050;cell cycle arrest;0.0334784020163079!GO:0004721;phosphoprotein phosphatase activity;0.033509727628638!GO:0030137;COPI-coated vesicle;0.0337678749990065!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0342327685404359!GO:0031371;ubiquitin conjugating enzyme complex;0.0342327685404359!GO:0009119;ribonucleoside metabolic process;0.0345891488646397!GO:0006096;glycolysis;0.0354411716990393!GO:0016790;thiolester hydrolase activity;0.0357957156994961!GO:0000790;nuclear chromatin;0.0367464911413429!GO:0006091;generation of precursor metabolites and energy;0.0370636362737306!GO:0043086;negative regulation of catalytic activity;0.0374189787970711!GO:0004680;casein kinase activity;0.0377301519336537!GO:0006470;protein amino acid dephosphorylation;0.0380623927873668!GO:0017134;fibroblast growth factor binding;0.0382660651329199!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0391663354188994!GO:0009161;ribonucleoside monophosphate metabolic process;0.0394665757583183!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0394665757583183!GO:0005732;small nucleolar ribonucleoprotein complex;0.039766996809048!GO:0006807;nitrogen compound metabolic process;0.0400361946628581!GO:0006733;oxidoreduction coenzyme metabolic process;0.0400777878013437!GO:0031902;late endosome membrane;0.0405969570516664!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0405969570516664!GO:0015399;primary active transmembrane transporter activity;0.0405969570516664!GO:0043241;protein complex disassembly;0.0406598603028895!GO:0043631;RNA polyadenylation;0.04125259438427!GO:0051053;negative regulation of DNA metabolic process;0.0413329806704956!GO:0000118;histone deacetylase complex;0.0422548806614602!GO:0019320;hexose catabolic process;0.0423746748970619!GO:0005666;DNA-directed RNA polymerase III complex;0.042739127638329!GO:0046112;nucleobase biosynthetic process;0.0427716576866348!GO:0005658;alpha DNA polymerase:primase complex;0.0429353660644183!GO:0008637;apoptotic mitochondrial changes;0.0431183210371757!GO:0008143;poly(A) binding;0.0431258315375363!GO:0001824;blastocyst development;0.0431783478387843!GO:0000175;3'-5'-exoribonuclease activity;0.0433562081801522!GO:0030384;phosphoinositide metabolic process;0.0435098587273512!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0438671728567887!GO:0016301;kinase activity;0.0440491330486624!GO:0046128;purine ribonucleoside metabolic process;0.0442361773603613!GO:0042278;purine nucleoside metabolic process;0.0442361773603613!GO:0006984;ER-nuclear signaling pathway;0.0442361773603613!GO:0006740;NADPH regeneration;0.0448444126696057!GO:0006098;pentose-phosphate shunt;0.0448444126696057!GO:0050681;androgen receptor binding;0.0448899302921784!GO:0022411;cellular component disassembly;0.0452638288999584!GO:0006406;mRNA export from nucleus;0.0468931651569086!GO:0006189;'de novo' IMP biosynthetic process;0.0470746139438725!GO:0006188;IMP biosynthetic process;0.0470746139438725!GO:0046040;IMP metabolic process;0.0470746139438725!GO:0048037;cofactor binding;0.0470746139438725!GO:0004239;methionyl aminopeptidase activity;0.0478873482001101!GO:0004748;ribonucleoside-diphosphate reductase activity;0.048884058021343!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.048884058021343!GO:0000152;nuclear ubiquitin ligase complex;0.048884058021343!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0490583699005052!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0490583699005052!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0490583699005052!GO:0051128;regulation of cellular component organization and biogenesis;0.0490583699005052 | |||
|sample_id=12724 | |sample_id=12724 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 98: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=unclassifiable | |sample_tissue=unclassifiable | ||
|timecourse=Melanocytic_differentiation | |||
|top_motifs=OCT4_SOX2{dimer}:2.95889027251;SP1:1.99951690981;PATZ1:1.90873232543;NFY{A,B,C}:1.73748677663;SNAI1..3:1.58369847139;POU2F1..3:1.46045593773;E2F1..5:1.4053008243;XCPE1{core}:1.39361723951;SOX{8,9,10}:1.32273143527;CUX2:1.26727135107;RREB1:1.23080740044;ZEB1:1.20869144895;MYOD1:1.18940497104;GFI1:1.18366134598;PAX1,9:1.15809143583;ZNF143:1.1420083841;PBX1:1.13901674217;RBPJ:1.13858596296;ZIC1..3:1.11382674077;T:1.10024958839;TFDP1:1.08806793716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.06908602081;LMO2:1.04502703118;MZF1:0.968798873802;POU5F1:0.961335934226;NANOG:0.897516310983;ONECUT1,2:0.889340764326;FOXM1:0.889245078967;NRF1:0.886276759432;bHLH_family:0.870389839835;MAZ:0.846106742753;IKZF2:0.831012819271;YY1:0.821838372662;LEF1_TCF7_TCF7L1,2:0.784725173233;VSX1,2:0.773214415354;EVI1:0.755983990284;STAT1,3:0.747450838026;SOX2:0.704548731071;MYB:0.686513117772;EBF1:0.677217477807;RORA:0.674099076399;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.633252069494;NKX2-3_NKX2-5:0.61176408273;SOX17:0.544670358054;ALX1:0.542286753696;BREu{core}:0.51114579335;ZNF384:0.501840187296;AIRE:0.499449210973;TOPORS:0.461391459246;CRX:0.45880678793;EN1,2:0.426880738841;ATF4:0.422351979505;CDX1,2,4:0.394204169886;KLF4:0.376937655074;HOX{A4,D4}:0.366418927805;ZFP161:0.364582758412;ESRRA:0.360966093654;SREBF1,2:0.352055647549;ELK1,4_GABP{A,B1}:0.333131924402;EGR1..3:0.323777636576;FOX{I1,J2}:0.293425866949;CDC5L:0.287715042427;POU3F1..4:0.280661623029;TBP:0.277401609946;STAT5{A,B}:0.274278900579;TP53:0.273353724652;TFAP2B:0.232225041991;FOXD3:0.228890540366;FOXQ1:0.198274582323;GTF2I:0.186128492552;UFEwm:0.142256514997;ARID5B:0.129973738292;ZBTB6:0.129155152594;HOX{A5,B5}:0.122954736531;HIC1:0.0959887573782;REST:0.090303706421;HNF4A_NR2F1,2:0.0820709064386;MTF1:0.0749287378622;ADNP_IRX_SIX_ZHX:0.0514472235355;HAND1,2:0.0441692154665;PRDM1:0.0435272380157;NANOG{mouse}:0.00243816956493;PITX1..3:-0.00670471537039;ZBTB16:-0.0242921419276;FOXN1:-0.0723676117984;PAX5:-0.084580071771;TBX4,5:-0.0937246296739;MTE{core}:-0.101805565874;ZNF423:-0.105019653251;HNF1A:-0.110707496454;CREB1:-0.115124432844;NR1H4:-0.117251476688;GCM1,2:-0.131469899818;GATA6:-0.146706858066;PPARG:-0.156247425656;HOX{A6,A7,B6,B7}:-0.160791598663;NR5A1,2:-0.161806805581;NHLH1,2:-0.162532859922;TEF:-0.162863255048;LHX3,4:-0.169470628595;DBP:-0.193791271645;GTF2A1,2:-0.204732625126;PAX2:-0.209854158642;POU6F1:-0.209939080925;HIF1A:-0.211124685445;ESR1:-0.214814861099;PAX3,7:-0.223329537248;RXR{A,B,G}:-0.226208139951;MYFfamily:-0.236612670515;MED-1{core}:-0.237785556595;GFI1B:-0.253248744334;GATA4:-0.258068111272;NKX2-1,4:-0.259245042793;PRRX1,2:-0.262684519144;HSF1,2:-0.282182393693;XBP1:-0.290558469486;JUN:-0.303126361094;TEAD1:-0.30762072294;FOX{F1,F2,J1}:-0.312348255786;ZNF148:-0.336426098781;NFKB1_REL_RELA:-0.339042263817;RFX1:-0.351786599812;FOXA2:-0.390412652703;NFE2L2:-0.398697872476;SRF:-0.405857813763;FOXP1:-0.417933340758;MEF2{A,B,C,D}:-0.429974035791;ATF2:-0.453147254836;PAX8:-0.456631260416;ATF5_CREB3:-0.468735003128;NFE2:-0.478545076322;IKZF1:-0.481108532682;TFAP2{A,C}:-0.489664236257;MYBL2:-0.492027097644;HMGA1,2:-0.550671037639;FOS_FOS{B,L1}_JUN{B,D}:-0.554602427192;TFCP2:-0.57423713558;BACH2:-0.577012528397;NR3C1:-0.593759142993;PAX4:-0.596129079163;NKX2-2,8:-0.59676656395;POU1F1:-0.59678379284;NFE2L1:-0.601132825246;FOSL2:-0.618359562163;HLF:-0.628152638559;NFIX:-0.639725713329;HMX1:-0.664893050355;AR:-0.667366149497;HES1:-0.675139579511;SPIB:-0.683109655993;SPI1:-0.694327316146;SOX5:-0.734150253145;FOXO1,3,4:-0.751603112614;FOXP3:-0.759128480494;RUNX1..3:-0.763728945839;AHR_ARNT_ARNT2:-0.776236228805;ALX4:-0.779612404336;NKX6-1,2:-0.820295894488;BPTF:-0.831319900861;TFAP4:-0.838343759452;NR6A1:-0.840456074503;FOX{D1,D2}:-0.848069914882;CEBPA,B_DDIT3:-0.909996028925;NKX3-1:-0.912447504687;RFX2..5_RFXANK_RFXAP:-0.931060428282;SPZ1:-0.949657981555;ETS1,2:-0.961814207921;FOXL1:-1.00063784329;NKX3-2:-1.00335039237;DMAP1_NCOR{1,2}_SMARC:-1.00428976866;PAX6:-1.02295199545;TAL1_TCF{3,4,12}:-1.02566555553;ELF1,2,4:-1.02567956991;ZNF238:-1.02748421792;HOXA9_MEIS1:-1.06692391732;IRF1,2:-1.13350432033;NFIL3:-1.1346980966;RXRA_VDR{dimer}:-1.1442551765;NFATC1..3:-1.14738224839;IRF7:-1.16455539058;GZF1:-1.17781302388;TLX1..3_NFIC{dimer}:-1.21663152386;HBP1_HMGB_SSRP1_UBTF:-1.2394894943;PDX1:-1.40419768972;GLI1..3:-1.4302764256;TGIF1:-1.46037064849;ATF6:-1.50477174164;MAFB:-1.60155720428;TLX2:-1.62563781282;EP300:-1.74773155071;STAT2,4,6:-1.76264608955;SMAD1..7,9:-2.01764117264 | |top_motifs=OCT4_SOX2{dimer}:2.95889027251;SP1:1.99951690981;PATZ1:1.90873232543;NFY{A,B,C}:1.73748677663;SNAI1..3:1.58369847139;POU2F1..3:1.46045593773;E2F1..5:1.4053008243;XCPE1{core}:1.39361723951;SOX{8,9,10}:1.32273143527;CUX2:1.26727135107;RREB1:1.23080740044;ZEB1:1.20869144895;MYOD1:1.18940497104;GFI1:1.18366134598;PAX1,9:1.15809143583;ZNF143:1.1420083841;PBX1:1.13901674217;RBPJ:1.13858596296;ZIC1..3:1.11382674077;T:1.10024958839;TFDP1:1.08806793716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.06908602081;LMO2:1.04502703118;MZF1:0.968798873802;POU5F1:0.961335934226;NANOG:0.897516310983;ONECUT1,2:0.889340764326;FOXM1:0.889245078967;NRF1:0.886276759432;bHLH_family:0.870389839835;MAZ:0.846106742753;IKZF2:0.831012819271;YY1:0.821838372662;LEF1_TCF7_TCF7L1,2:0.784725173233;VSX1,2:0.773214415354;EVI1:0.755983990284;STAT1,3:0.747450838026;SOX2:0.704548731071;MYB:0.686513117772;EBF1:0.677217477807;RORA:0.674099076399;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.633252069494;NKX2-3_NKX2-5:0.61176408273;SOX17:0.544670358054;ALX1:0.542286753696;BREu{core}:0.51114579335;ZNF384:0.501840187296;AIRE:0.499449210973;TOPORS:0.461391459246;CRX:0.45880678793;EN1,2:0.426880738841;ATF4:0.422351979505;CDX1,2,4:0.394204169886;KLF4:0.376937655074;HOX{A4,D4}:0.366418927805;ZFP161:0.364582758412;ESRRA:0.360966093654;SREBF1,2:0.352055647549;ELK1,4_GABP{A,B1}:0.333131924402;EGR1..3:0.323777636576;FOX{I1,J2}:0.293425866949;CDC5L:0.287715042427;POU3F1..4:0.280661623029;TBP:0.277401609946;STAT5{A,B}:0.274278900579;TP53:0.273353724652;TFAP2B:0.232225041991;FOXD3:0.228890540366;FOXQ1:0.198274582323;GTF2I:0.186128492552;UFEwm:0.142256514997;ARID5B:0.129973738292;ZBTB6:0.129155152594;HOX{A5,B5}:0.122954736531;HIC1:0.0959887573782;REST:0.090303706421;HNF4A_NR2F1,2:0.0820709064386;MTF1:0.0749287378622;ADNP_IRX_SIX_ZHX:0.0514472235355;HAND1,2:0.0441692154665;PRDM1:0.0435272380157;NANOG{mouse}:0.00243816956493;PITX1..3:-0.00670471537039;ZBTB16:-0.0242921419276;FOXN1:-0.0723676117984;PAX5:-0.084580071771;TBX4,5:-0.0937246296739;MTE{core}:-0.101805565874;ZNF423:-0.105019653251;HNF1A:-0.110707496454;CREB1:-0.115124432844;NR1H4:-0.117251476688;GCM1,2:-0.131469899818;GATA6:-0.146706858066;PPARG:-0.156247425656;HOX{A6,A7,B6,B7}:-0.160791598663;NR5A1,2:-0.161806805581;NHLH1,2:-0.162532859922;TEF:-0.162863255048;LHX3,4:-0.169470628595;DBP:-0.193791271645;GTF2A1,2:-0.204732625126;PAX2:-0.209854158642;POU6F1:-0.209939080925;HIF1A:-0.211124685445;ESR1:-0.214814861099;PAX3,7:-0.223329537248;RXR{A,B,G}:-0.226208139951;MYFfamily:-0.236612670515;MED-1{core}:-0.237785556595;GFI1B:-0.253248744334;GATA4:-0.258068111272;NKX2-1,4:-0.259245042793;PRRX1,2:-0.262684519144;HSF1,2:-0.282182393693;XBP1:-0.290558469486;JUN:-0.303126361094;TEAD1:-0.30762072294;FOX{F1,F2,J1}:-0.312348255786;ZNF148:-0.336426098781;NFKB1_REL_RELA:-0.339042263817;RFX1:-0.351786599812;FOXA2:-0.390412652703;NFE2L2:-0.398697872476;SRF:-0.405857813763;FOXP1:-0.417933340758;MEF2{A,B,C,D}:-0.429974035791;ATF2:-0.453147254836;PAX8:-0.456631260416;ATF5_CREB3:-0.468735003128;NFE2:-0.478545076322;IKZF1:-0.481108532682;TFAP2{A,C}:-0.489664236257;MYBL2:-0.492027097644;HMGA1,2:-0.550671037639;FOS_FOS{B,L1}_JUN{B,D}:-0.554602427192;TFCP2:-0.57423713558;BACH2:-0.577012528397;NR3C1:-0.593759142993;PAX4:-0.596129079163;NKX2-2,8:-0.59676656395;POU1F1:-0.59678379284;NFE2L1:-0.601132825246;FOSL2:-0.618359562163;HLF:-0.628152638559;NFIX:-0.639725713329;HMX1:-0.664893050355;AR:-0.667366149497;HES1:-0.675139579511;SPIB:-0.683109655993;SPI1:-0.694327316146;SOX5:-0.734150253145;FOXO1,3,4:-0.751603112614;FOXP3:-0.759128480494;RUNX1..3:-0.763728945839;AHR_ARNT_ARNT2:-0.776236228805;ALX4:-0.779612404336;NKX6-1,2:-0.820295894488;BPTF:-0.831319900861;TFAP4:-0.838343759452;NR6A1:-0.840456074503;FOX{D1,D2}:-0.848069914882;CEBPA,B_DDIT3:-0.909996028925;NKX3-1:-0.912447504687;RFX2..5_RFXANK_RFXAP:-0.931060428282;SPZ1:-0.949657981555;ETS1,2:-0.961814207921;FOXL1:-1.00063784329;NKX3-2:-1.00335039237;DMAP1_NCOR{1,2}_SMARC:-1.00428976866;PAX6:-1.02295199545;TAL1_TCF{3,4,12}:-1.02566555553;ELF1,2,4:-1.02567956991;ZNF238:-1.02748421792;HOXA9_MEIS1:-1.06692391732;IRF1,2:-1.13350432033;NFIL3:-1.1346980966;RXRA_VDR{dimer}:-1.1442551765;NFATC1..3:-1.14738224839;IRF7:-1.16455539058;GZF1:-1.17781302388;TLX1..3_NFIC{dimer}:-1.21663152386;HBP1_HMGB_SSRP1_UBTF:-1.2394894943;PDX1:-1.40419768972;GLI1..3:-1.4302764256;TGIF1:-1.46037064849;ATF6:-1.50477174164;MAFB:-1.60155720428;TLX2:-1.62563781282;EP300:-1.74773155071;STAT2,4,6:-1.76264608955;SMAD1..7,9:-2.01764117264 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12724-135G6;search_select_hide=table117:FF:12724-135G6 | |||
}} | }} | ||
Latest revision as of 18:43, 4 June 2020
| Name: | H9 Embryonic Stem cells, biol_rep2 (H9ES-2) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12824 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12824
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12824
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0961 |
| 10 | 10 | 0.0161 |
| 100 | 100 | 0.897 |
| 101 | 101 | 0.32 |
| 102 | 102 | 0.54 |
| 103 | 103 | 0.17 |
| 104 | 104 | 0.638 |
| 105 | 105 | 0.25 |
| 106 | 106 | 0.0354 |
| 107 | 107 | 0.272 |
| 108 | 108 | 0.89 |
| 109 | 109 | 0.351 |
| 11 | 11 | 0.149 |
| 110 | 110 | 0.338 |
| 111 | 111 | 0.0139 |
| 112 | 112 | 0.26 |
| 113 | 113 | 0.0427 |
| 114 | 114 | 0.0191 |
| 115 | 115 | 0.273 |
| 116 | 116 | 0.954 |
| 117 | 117 | 0.298 |
| 118 | 118 | 0.544 |
| 119 | 119 | 0.149 |
| 12 | 12 | 0.999 |
| 120 | 120 | 0.607 |
| 121 | 121 | 0.808 |
| 122 | 122 | 0.927 |
| 123 | 123 | 0.119 |
| 124 | 124 | 0.12 |
| 125 | 125 | 0.732 |
| 126 | 126 | 0.873 |
| 127 | 127 | 0.677 |
| 128 | 128 | 0.558 |
| 129 | 129 | 0.429 |
| 13 | 13 | 0.609 |
| 130 | 130 | 0.153 |
| 131 | 131 | 0.469 |
| 132 | 132 | 0.753 |
| 133 | 133 | 0.0805 |
| 134 | 134 | 0.376 |
| 135 | 135 | 0.0304 |
| 136 | 136 | 0.175 |
| 137 | 137 | 0.355 |
| 138 | 138 | 0.199 |
| 139 | 139 | 0.00465 |
| 14 | 14 | 0.613 |
| 140 | 140 | 0.113 |
| 141 | 141 | 0.547 |
| 142 | 142 | 0.587 |
| 143 | 143 | 0.0156 |
| 144 | 144 | 0.469 |
| 145 | 145 | 0.413 |
| 146 | 146 | 0.354 |
| 147 | 147 | 0.729 |
| 148 | 148 | 0.00441 |
| 149 | 149 | 0.0104 |
| 15 | 15 | 0.0695 |
| 150 | 150 | 0.714 |
| 151 | 151 | 0.0555 |
| 152 | 152 | 0.674 |
| 153 | 153 | 0.189 |
| 154 | 154 | 0.158 |
| 155 | 155 | 0.853 |
| 156 | 156 | 0.777 |
| 157 | 157 | 0.672 |
| 158 | 158 | 0.652 |
| 159 | 159 | 0.779 |
| 16 | 16 | 0.374 |
| 160 | 160 | 0.256 |
| 161 | 161 | 0.992 |
| 162 | 162 | 0.513 |
| 163 | 163 | 0.662 |
| 164 | 164 | 0.214 |
| 165 | 165 | 0.281 |
| 166 | 166 | 0.634 |
| 167 | 167 | 0.0151 |
| 168 | 168 | 0.288 |
| 169 | 169 | 5.4759e-4 |
| 17 | 17 | 0.315 |
| 18 | 18 | 0.325 |
| 19 | 19 | 0.153 |
| 2 | 2 | 0.539 |
| 20 | 20 | 0.974 |
| 21 | 21 | 0.503 |
| 22 | 22 | 0.213 |
| 23 | 23 | 0.019 |
| 24 | 24 | 0.84 |
| 25 | 25 | 0.323 |
| 26 | 26 | 0.211 |
| 27 | 27 | 0.472 |
| 28 | 28 | 0.812 |
| 29 | 29 | 0.869 |
| 3 | 3 | 0.0772 |
| 30 | 30 | 0.841 |
| 31 | 31 | 0.834 |
| 32 | 32 | 0.0394 |
| 33 | 33 | 0.683 |
| 34 | 34 | 0.858 |
| 35 | 35 | 0.303 |
| 36 | 36 | 0.0466 |
| 37 | 37 | 0.296 |
| 38 | 38 | 0.324 |
| 39 | 39 | 0.483 |
| 4 | 4 | 0.896 |
| 40 | 40 | 0.581 |
| 41 | 41 | 0.19 |
| 42 | 42 | 0.23 |
| 43 | 43 | 0.122 |
| 44 | 44 | 0.752 |
| 45 | 45 | 0.723 |
| 46 | 46 | 0.0604 |
| 47 | 47 | 0.737 |
| 48 | 48 | 0.558 |
| 49 | 49 | 0.0836 |
| 5 | 5 | 0.07 |
| 50 | 50 | 0.875 |
| 51 | 51 | 0.772 |
| 52 | 52 | 0.42 |
| 53 | 53 | 0.153 |
| 54 | 54 | 0.443 |
| 55 | 55 | 0.023 |
| 56 | 56 | 0.618 |
| 57 | 57 | 0.397 |
| 58 | 58 | 0.0645 |
| 59 | 59 | 0.265 |
| 6 | 6 | 0.67 |
| 60 | 60 | 0.0937 |
| 61 | 61 | 0.866 |
| 62 | 62 | 0.0253 |
| 63 | 63 | 0.117 |
| 64 | 64 | 0.294 |
| 65 | 65 | 0.102 |
| 66 | 66 | 0.284 |
| 67 | 67 | 0.165 |
| 68 | 68 | 0.669 |
| 69 | 69 | 0.705 |
| 7 | 7 | 0.302 |
| 70 | 70 | 0.0101 |
| 71 | 71 | 0.0302 |
| 72 | 72 | 0.476 |
| 73 | 73 | 0.18 |
| 74 | 74 | 0.186 |
| 75 | 75 | 0.344 |
| 76 | 76 | 0.44 |
| 77 | 77 | 0.278 |
| 78 | 78 | 0.488 |
| 79 | 79 | 0.304 |
| 8 | 8 | 0.124 |
| 80 | 80 | 0.114 |
| 81 | 81 | 0.257 |
| 82 | 82 | 0.0403 |
| 83 | 83 | 0.818 |
| 84 | 84 | 0.96 |
| 85 | 85 | 0.0357 |
| 86 | 86 | 0.663 |
| 87 | 87 | 0.246 |
| 88 | 88 | 0.572 |
| 89 | 89 | 0.142 |
| 9 | 9 | 0.21 |
| 90 | 90 | 0.155 |
| 91 | 91 | 0.137 |
| 92 | 92 | 0.0267 |
| 93 | 93 | 0.288 |
| 94 | 94 | 0.047 |
| 95 | 95 | 0.713 |
| 96 | 96 | 0.027 |
| 97 | 97 | 0.664 |
| 98 | 98 | 0.316 |
| 99 | 99 | 0.693 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12824
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002322 (embryonic stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000592 (human H9 Embryonic Stem cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
