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(Created page with "{{f5samples |id=FF:10199-103F1 |name=parotid gland, adult, biol_rep1 |sample_id=10199 |rna_tube_id=103F1 |rna_box=103 |rna_position=F1 |sample_cell_lot=NA |sample_cell...")
 
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{{f5samples
{{f5samples
|id=FF:10199-103F1
|DRA_sample_Accession=CAGE@SAMD00005196
|name=parotid gland, adult, biol_rep1
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005196
|sample_id=10199
|accession_numbers=CAGE;DRX008704;DRR009576;DRZ001001;DRZ002386;DRZ012351;DRZ013736
|rna_tube_id=103F1
|accession_numbers_RNASeq=RNA-Seq;DRX057117;DRR062876;DRZ007952
|rna_box=103
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001044,UBERON:0001831,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0001829,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0001456,UBERON:0002330,UBERON:0001567
|rna_position=F1
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Biochain
|rna_lot_number=
|rna_catalog_number=R1234190-50
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=
|sample_sex=23.00000
|sample_age=M
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=50.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs12849,LSID973,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000167,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001044,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001555,UBERON:0001567,UBERON:0001829,UBERON:0001831,UBERON:0002050,UBERON:0002330,UBERON:0002365,UBERON:0002530,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003293,UBERON:0003294,UBERON:0003408,UBERON:0004089,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007023,UBERON:0007026,UBERON:0008801,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010199
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001829;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008801,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg38.nobarcode.ctss.bed.gz
|id=FF:10199-103F1
|is_a=EFO:0002091;;FF:0010199
|is_obsolete=
|library_id=CNhs12849
|library_id_phase_based=2:CNhs12849
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10199
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10199
|name=parotid gland, adult
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12849,LSID973,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=103
|rna_catalog_number=R1234190-50
|rna_concentration=2.67
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=F1
|rna_rin=
|rna_sample_type=
|rna_tube_id=103F1
|rna_weight_ug=50
|rnaseq_library_id=RDhi10060
|sample_age=23
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=
|sample_company=Biochain
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.45887492266984e-226!GO:0005737;cytoplasm;1.37966723996572e-200!GO:0044444;cytoplasmic part;3.36566617435426e-154!GO:0043226;organelle;4.06894904856213e-139!GO:0043229;intracellular organelle;9.50702412672131e-139!GO:0043231;intracellular membrane-bound organelle;1.73611207953069e-132!GO:0043227;membrane-bound organelle;1.76741207228979e-132!GO:0044422;organelle part;8.04175496125873e-103!GO:0044446;intracellular organelle part;4.75867664102487e-101!GO:0005515;protein binding;3.28983509144438e-75!GO:0032991;macromolecular complex;2.48413823474822e-70!GO:0005739;mitochondrion;1.51546793689451e-67!GO:0030529;ribonucleoprotein complex;3.54076043371492e-64!GO:0031090;organelle membrane;2.36688005627893e-56!GO:0043233;organelle lumen;3.35221156568846e-50!GO:0031974;membrane-enclosed lumen;3.35221156568846e-50!GO:0003723;RNA binding;8.7667678017256e-50!GO:0044237;cellular metabolic process;1.25950772017721e-47!GO:0044429;mitochondrial part;1.4889783275628e-45!GO:0044238;primary metabolic process;1.56896798862651e-45!GO:0033036;macromolecule localization;2.51184118646591e-41!GO:0005840;ribosome;2.51184118646591e-41!GO:0015031;protein transport;1.28684277721795e-40!GO:0006412;translation;2.09622347080286e-40!GO:0044428;nuclear part;4.7658417090205e-40!GO:0045184;establishment of protein localization;5.62771595041152e-40!GO:0009058;biosynthetic process;2.13920056661214e-39!GO:0008104;protein localization;2.58613843354082e-39!GO:0031967;organelle envelope;2.90241508956225e-38!GO:0043170;macromolecule metabolic process;5.1600946923479e-38!GO:0031975;envelope;5.87327428368438e-38!GO:0009059;macromolecule biosynthetic process;3.52578250483037e-37!GO:0003735;structural constituent of ribosome;2.05595254404217e-35!GO:0044249;cellular biosynthetic process;6.18033036283095e-35!GO:0043234;protein complex;1.63954341137107e-34!GO:0019538;protein metabolic process;5.98374036534939e-34!GO:0005829;cytosol;2.61141522599421e-33!GO:0033279;ribosomal subunit;8.98755043110958e-32!GO:0016043;cellular component organization and biogenesis;6.17609653564994e-31!GO:0006396;RNA processing;3.00505965277513e-30!GO:0044260;cellular macromolecule metabolic process;3.47245716888079e-30!GO:0005740;mitochondrial envelope;4.88620008522225e-30!GO:0031966;mitochondrial membrane;6.62198658107482e-29!GO:0044267;cellular protein metabolic process;8.63175434935698e-29!GO:0019866;organelle inner membrane;8.73006484777682e-29!GO:0005634;nucleus;1.95777496232143e-28!GO:0016071;mRNA metabolic process;3.20588827773537e-28!GO:0005743;mitochondrial inner membrane;4.98868547327947e-28!GO:0008380;RNA splicing;7.46132575675512e-26!GO:0046907;intracellular transport;9.4587964885188e-26!GO:0006886;intracellular protein transport;1.14793503473797e-24!GO:0031981;nuclear lumen;2.5349555632791e-24!GO:0005783;endoplasmic reticulum;3.96585029909271e-24!GO:0012505;endomembrane system;9.89140921331759e-24!GO:0006397;mRNA processing;1.47054108128204e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.44496861549776e-23!GO:0006119;oxidative phosphorylation;5.99905196854963e-23!GO:0065003;macromolecular complex assembly;3.69526827997302e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.25384740923368e-22!GO:0022607;cellular component assembly;9.72423498379149e-21!GO:0031980;mitochondrial lumen;4.36343983228564e-20!GO:0005759;mitochondrial matrix;4.36343983228564e-20!GO:0005794;Golgi apparatus;7.33335304934264e-20!GO:0044445;cytosolic part;1.75527804432557e-19!GO:0044455;mitochondrial membrane part;5.02613557541338e-19!GO:0016192;vesicle-mediated transport;7.16099751951855e-19!GO:0005681;spliceosome;1.89097785976488e-18!GO:0010467;gene expression;3.12178600506085e-18!GO:0044432;endoplasmic reticulum part;3.3486403068434e-18!GO:0005746;mitochondrial respiratory chain;5.73909201223875e-18!GO:0051641;cellular localization;7.86717095934453e-18!GO:0051649;establishment of cellular localization;8.34323228802843e-18!GO:0022618;protein-RNA complex assembly;8.82256243313593e-17!GO:0015935;small ribosomal subunit;1.01952391924249e-16!GO:0048193;Golgi vesicle transport;1.85599770943991e-16!GO:0048770;pigment granule;2.28620030209783e-16!GO:0042470;melanosome;2.28620030209783e-16!GO:0015934;large ribosomal subunit;4.40557067013367e-16!GO:0005654;nucleoplasm;8.84469179670542e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.94011443465995e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.93119309152327e-16!GO:0003954;NADH dehydrogenase activity;9.93119309152327e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.93119309152327e-16!GO:0006457;protein folding;1.16111198878289e-15!GO:0008134;transcription factor binding;1.69801185787686e-15!GO:0044248;cellular catabolic process;7.40742372944438e-15!GO:0043283;biopolymer metabolic process;1.49941905661387e-14!GO:0043228;non-membrane-bound organelle;1.62155271249571e-14!GO:0043232;intracellular non-membrane-bound organelle;1.62155271249571e-14!GO:0051186;cofactor metabolic process;2.36574103051777e-14!GO:0044265;cellular macromolecule catabolic process;3.32823728783286e-14!GO:0008135;translation factor activity, nucleic acid binding;4.87410470906253e-14!GO:0044451;nucleoplasm part;7.46984575791513e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.59210807942224e-13!GO:0005789;endoplasmic reticulum membrane;1.94458557404415e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.97632719535214e-13!GO:0045271;respiratory chain complex I;1.97632719535214e-13!GO:0005747;mitochondrial respiratory chain complex I;1.97632719535214e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.04121986141145e-13!GO:0042773;ATP synthesis coupled electron transport;3.04121986141145e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.74341092546238e-13!GO:0006605;protein targeting;1.94911974059207e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.33192469795749e-12!GO:0043285;biopolymer catabolic process;2.60713587741263e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.73753497455658e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93644359642305e-12!GO:0008092;cytoskeletal protein binding;3.33145282093886e-12!GO:0005793;ER-Golgi intermediate compartment;3.39346077705087e-12!GO:0006996;organelle organization and biogenesis;4.22182616381625e-12!GO:0009057;macromolecule catabolic process;4.47053897298339e-12!GO:0016874;ligase activity;4.90680455900041e-12!GO:0019941;modification-dependent protein catabolic process;5.01164488426281e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.01164488426281e-12!GO:0005761;mitochondrial ribosome;5.55093712360371e-12!GO:0000313;organellar ribosome;5.55093712360371e-12!GO:0006511;ubiquitin-dependent protein catabolic process;5.62282906637196e-12!GO:0044257;cellular protein catabolic process;7.79485721712223e-12!GO:0009055;electron carrier activity;9.49786930325701e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.5777737553228e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.06429319250302e-11!GO:0051082;unfolded protein binding;1.38622789005614e-11!GO:0006413;translational initiation;1.55903280746538e-11!GO:0006446;regulation of translational initiation;1.72221110206569e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.91932277163254e-11!GO:0006732;coenzyme metabolic process;2.12056205767447e-11!GO:0016462;pyrophosphatase activity;2.24759774730834e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;2.47271884565547e-11!GO:0000166;nucleotide binding;6.34655729348316e-11!GO:0005773;vacuole;1.02831524267993e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.29174526065151e-10!GO:0030163;protein catabolic process;1.64758222585373e-10!GO:0019829;cation-transporting ATPase activity;1.67669230388311e-10!GO:0006512;ubiquitin cycle;2.72560491746463e-10!GO:0017111;nucleoside-triphosphatase activity;2.92258667655817e-10!GO:0003743;translation initiation factor activity;4.24543276317088e-10!GO:0005768;endosome;5.08843165042786e-10!GO:0012501;programmed cell death;5.59986916541378e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.84996931058252e-10!GO:0006915;apoptosis;6.60809192898174e-10!GO:0009056;catabolic process;1.57151363453727e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.09328924319688e-09!GO:0008565;protein transporter activity;2.1369894925874e-09!GO:0005635;nuclear envelope;2.26001388031693e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.37206673950453e-09!GO:0003712;transcription cofactor activity;2.39319191280209e-09!GO:0044431;Golgi apparatus part;2.78465012778729e-09!GO:0005730;nucleolus;4.01298145371205e-09!GO:0031982;vesicle;4.43227645798423e-09!GO:0009141;nucleoside triphosphate metabolic process;4.43719583878009e-09!GO:0000323;lytic vacuole;4.88185614577936e-09!GO:0005764;lysosome;4.88185614577936e-09!GO:0006461;protein complex assembly;4.89520930069232e-09!GO:0016469;proton-transporting two-sector ATPase complex;5.03680674677534e-09!GO:0016604;nuclear body;6.02469970707004e-09!GO:0008219;cell death;7.43797996268956e-09!GO:0016265;death;7.43797996268956e-09!GO:0015986;ATP synthesis coupled proton transport;7.58379921766785e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.58379921766785e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.09919689635393e-09!GO:0000375;RNA splicing, via transesterification reactions;8.09919689635393e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.09919689635393e-09!GO:0045333;cellular respiration;9.02644223781227e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.07749479723661e-08!GO:0031410;cytoplasmic vesicle;1.18874851096997e-08!GO:0009060;aerobic respiration;1.53795762207364e-08!GO:0009150;purine ribonucleotide metabolic process;1.72856768724171e-08!GO:0009259;ribonucleotide metabolic process;2.11280350859567e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.4993003346647e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.4993003346647e-08!GO:0031988;membrane-bound vesicle;2.96656251803522e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.54450288237831e-08!GO:0006163;purine nucleotide metabolic process;3.63444185750649e-08!GO:0016607;nuclear speck;4.58910245160895e-08!GO:0046034;ATP metabolic process;5.00502993291479e-08!GO:0016023;cytoplasmic membrane-bound vesicle;6.09193389142352e-08!GO:0016491;oxidoreductase activity;6.63598231473592e-08!GO:0043412;biopolymer modification;6.84559057650597e-08!GO:0009109;coenzyme catabolic process;7.27171375718291e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.00462994175434e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.00462994175434e-08!GO:0017076;purine nucleotide binding;1.1179266581988e-07!GO:0006913;nucleocytoplasmic transport;1.1683116741835e-07!GO:0006091;generation of precursor metabolites and energy;1.19634039601805e-07!GO:0030120;vesicle coat;1.42347414159217e-07!GO:0030662;coated vesicle membrane;1.42347414159217e-07!GO:0005770;late endosome;1.8042639965492e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.10335382948111e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.10335382948111e-07!GO:0051169;nuclear transport;2.72905177047625e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.86800349937359e-07!GO:0008639;small protein conjugating enzyme activity;3.46012999767114e-07!GO:0006754;ATP biosynthetic process;3.59436150374814e-07!GO:0006753;nucleoside phosphate metabolic process;3.59436150374814e-07!GO:0031965;nuclear membrane;3.77405317303845e-07!GO:0048475;coated membrane;3.77635183249358e-07!GO:0030117;membrane coat;3.77635183249358e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.26710469255175e-07!GO:0017038;protein import;4.41868426416366e-07!GO:0051187;cofactor catabolic process;4.47274399369004e-07!GO:0000139;Golgi membrane;4.87686322299821e-07!GO:0032553;ribonucleotide binding;4.99052424281517e-07!GO:0032555;purine ribonucleotide binding;4.99052424281517e-07!GO:0009260;ribonucleotide biosynthetic process;5.35973669515703e-07!GO:0006099;tricarboxylic acid cycle;5.48703092732517e-07!GO:0046356;acetyl-CoA catabolic process;5.48703092732517e-07!GO:0006164;purine nucleotide biosynthetic process;5.63791723362002e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.29425063096827e-07!GO:0006464;protein modification process;6.72144823503355e-07!GO:0004842;ubiquitin-protein ligase activity;7.45794417060588e-07!GO:0006084;acetyl-CoA metabolic process;7.93191075354738e-07!GO:0022890;inorganic cation transmembrane transporter activity;8.72818532354522e-07!GO:0042254;ribosome biogenesis and assembly;1.18945510565291e-06!GO:0003779;actin binding;1.19047403682909e-06!GO:0051246;regulation of protein metabolic process;1.39205789736414e-06!GO:0019787;small conjugating protein ligase activity;1.45617576774109e-06!GO:0051188;cofactor biosynthetic process;1.66745860908132e-06!GO:0044262;cellular carbohydrate metabolic process;2.07717925282258e-06!GO:0030133;transport vesicle;3.34272623118706e-06!GO:0051789;response to protein stimulus;3.66175178617982e-06!GO:0006986;response to unfolded protein;3.66175178617982e-06!GO:0006613;cotranslational protein targeting to membrane;3.91242085009655e-06!GO:0030029;actin filament-based process;4.19357000298671e-06!GO:0006752;group transfer coenzyme metabolic process;4.55273247154272e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.78725657710759e-06!GO:0006366;transcription from RNA polymerase II promoter;5.76284763321201e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.93446330930339e-06!GO:0031252;leading edge;6.24593960950401e-06!GO:0045259;proton-transporting ATP synthase complex;6.6531958711624e-06!GO:0005788;endoplasmic reticulum lumen;9.29101267619138e-06!GO:0016887;ATPase activity;9.5039599292869e-06!GO:0048523;negative regulation of cellular process;9.76706613812291e-06!GO:0015980;energy derivation by oxidation of organic compounds;9.76706613812291e-06!GO:0005798;Golgi-associated vesicle;1.21887149465156e-05!GO:0030554;adenyl nucleotide binding;1.31408616878657e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.4195885751744e-05!GO:0042623;ATPase activity, coupled;1.43140174266304e-05!GO:0016044;membrane organization and biogenesis;1.47446644006968e-05!GO:0015629;actin cytoskeleton;2.04786405994049e-05!GO:0006259;DNA metabolic process;2.32860074767435e-05!GO:0050662;coenzyme binding;2.36474877469412e-05!GO:0042981;regulation of apoptosis;2.50700447180655e-05!GO:0007264;small GTPase mediated signal transduction;2.64923440938693e-05!GO:0016881;acid-amino acid ligase activity;2.95651720122698e-05!GO:0003713;transcription coactivator activity;3.06930747468503e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.622603979535e-05!GO:0004812;aminoacyl-tRNA ligase activity;3.622603979535e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.622603979535e-05!GO:0006082;organic acid metabolic process;3.74906548126672e-05!GO:0043067;regulation of programmed cell death;3.84718687935303e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.9406629485242e-05!GO:0019752;carboxylic acid metabolic process;3.99089072369991e-05!GO:0043687;post-translational protein modification;4.18752154200663e-05!GO:0044440;endosomal part;4.23484001112519e-05!GO:0010008;endosome membrane;4.23484001112519e-05!GO:0006399;tRNA metabolic process;4.29388820692398e-05!GO:0016564;transcription repressor activity;4.41843409501094e-05!GO:0032559;adenyl ribonucleotide binding;4.42030469230181e-05!GO:0009108;coenzyme biosynthetic process;4.48395324247536e-05!GO:0015992;proton transport;4.5325617722886e-05!GO:0044453;nuclear membrane part;4.62861732487404e-05!GO:0019843;rRNA binding;4.71508525864714e-05!GO:0016070;RNA metabolic process;4.84716463127979e-05!GO:0005524;ATP binding;4.95807101719576e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.04747219576309e-05!GO:0019899;enzyme binding;5.54187248805302e-05!GO:0003714;transcription corepressor activity;5.76822967978963e-05!GO:0006916;anti-apoptosis;6.1592248909292e-05!GO:0003676;nucleic acid binding;6.55424933982618e-05!GO:0000245;spliceosome assembly;6.7143754146174e-05!GO:0006818;hydrogen transport;6.75204379501749e-05!GO:0065002;intracellular protein transport across a membrane;6.89144720088674e-05!GO:0016853;isomerase activity;7.20225689109209e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.84153493658599e-05!GO:0045045;secretory pathway;8.75312182076156e-05!GO:0043038;amino acid activation;9.36192543900567e-05!GO:0006418;tRNA aminoacylation for protein translation;9.36192543900567e-05!GO:0043039;tRNA aminoacylation;9.36192543900567e-05!GO:0005762;mitochondrial large ribosomal subunit;9.5346086703562e-05!GO:0000315;organellar large ribosomal subunit;9.5346086703562e-05!GO:0005774;vacuolar membrane;9.90331182823954e-05!GO:0006612;protein targeting to membrane;0.000102035811086728!GO:0006793;phosphorus metabolic process;0.000114987836825204!GO:0006796;phosphate metabolic process;0.000114987836825204!GO:0043021;ribonucleoprotein binding;0.000120414869421445!GO:0048037;cofactor binding;0.00012546429425239!GO:0048519;negative regulation of biological process;0.000126148753360766!GO:0003924;GTPase activity;0.000139119818178847!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000152578881537055!GO:0033116;ER-Golgi intermediate compartment membrane;0.000152859684161522!GO:0032940;secretion by cell;0.000154433613398796!GO:0051287;NAD binding;0.0001946989959085!GO:0004298;threonine endopeptidase activity;0.000209420199614018!GO:0008654;phospholipid biosynthetic process;0.000211692804724896!GO:0000151;ubiquitin ligase complex;0.000215227289847441!GO:0006891;intra-Golgi vesicle-mediated transport;0.000220141828016397!GO:0006606;protein import into nucleus;0.000224352604417291!GO:0051170;nuclear import;0.000228353737599714!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000245918436512036!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000251475878959573!GO:0048471;perinuclear region of cytoplasm;0.000266341741186834!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000306702748074645!GO:0043069;negative regulation of programmed cell death;0.000317222896448506!GO:0016310;phosphorylation;0.000318182252637889!GO:0005048;signal sequence binding;0.00032375941046782!GO:0005769;early endosome;0.000334224985418145!GO:0043066;negative regulation of apoptosis;0.000354769996230172!GO:0005643;nuclear pore;0.000359817048225132!GO:0005905;coated pit;0.000364154160934253!GO:0005525;GTP binding;0.000390356361298681!GO:0016197;endosome transport;0.000407587314386386!GO:0006364;rRNA processing;0.000442548482926384!GO:0000314;organellar small ribosomal subunit;0.000446826522708126!GO:0005763;mitochondrial small ribosomal subunit;0.000446826522708126!GO:0051427;hormone receptor binding;0.000451251854353555!GO:0044437;vacuolar part;0.00045803293560854!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000472997210906849!GO:0015399;primary active transmembrane transporter activity;0.000472997210906849!GO:0005741;mitochondrial outer membrane;0.000482399746780329!GO:0031324;negative regulation of cellular metabolic process;0.000505735411682324!GO:0031968;organelle outer membrane;0.000512285140512215!GO:0019867;outer membrane;0.00054584792653618!GO:0032446;protein modification by small protein conjugation;0.000558891310656849!GO:0045947;negative regulation of translational initiation;0.000568655176027897!GO:0019318;hexose metabolic process;0.000671825129077152!GO:0016072;rRNA metabolic process;0.000672909106872904!GO:0007005;mitochondrion organization and biogenesis;0.000678574381741765!GO:0003724;RNA helicase activity;0.00068249286389188!GO:0043566;structure-specific DNA binding;0.000694023936286878!GO:0016563;transcription activator activity;0.000720472156415754!GO:0043623;cellular protein complex assembly;0.000740464864079246!GO:0016859;cis-trans isomerase activity;0.000789417997646859!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000790304189429004!GO:0016567;protein ubiquitination;0.000798774930669497!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00080040029114492!GO:0042802;identical protein binding;0.000827037093718547!GO:0006897;endocytosis;0.000879769644230839!GO:0010324;membrane invagination;0.000879769644230839!GO:0035257;nuclear hormone receptor binding;0.000883473497844875!GO:0048500;signal recognition particle;0.000909028764301609!GO:0016568;chromatin modification;0.000960981718138827!GO:0008026;ATP-dependent helicase activity;0.0011426200186048!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00114493902217373!GO:0015002;heme-copper terminal oxidase activity;0.00114493902217373!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00114493902217373!GO:0004129;cytochrome-c oxidase activity;0.00114493902217373!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114719634249184!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114719634249184!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114719634249184!GO:0050657;nucleic acid transport;0.00117864796062982!GO:0051236;establishment of RNA localization;0.00117864796062982!GO:0050658;RNA transport;0.00117864796062982!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00119868451348339!GO:0005996;monosaccharide metabolic process;0.00125729340930176!GO:0051920;peroxiredoxin activity;0.00127557887907546!GO:0030176;integral to endoplasmic reticulum membrane;0.00130614068788133!GO:0031072;heat shock protein binding;0.00134563757998549!GO:0016740;transferase activity;0.00136213555160253!GO:0005975;carbohydrate metabolic process;0.00138704082662617!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00146481346995725!GO:0009892;negative regulation of metabolic process;0.00154149021046097!GO:0003697;single-stranded DNA binding;0.00164587017135756!GO:0030118;clathrin coat;0.00166084554577006!GO:0030867;rough endoplasmic reticulum membrane;0.00168921121927503!GO:0006403;RNA localization;0.00169295984411735!GO:0006650;glycerophospholipid metabolic process;0.00170946956203333!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00176714181138487!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00176714181138487!GO:0030658;transport vesicle membrane;0.0018677699290401!GO:0004576;oligosaccharyl transferase activity;0.00187277131044166!GO:0007265;Ras protein signal transduction;0.00189272099453902!GO:0005791;rough endoplasmic reticulum;0.00191874090263243!GO:0001726;ruffle;0.00198996379731991!GO:0009117;nucleotide metabolic process;0.00201961289058244!GO:0005667;transcription factor complex;0.0021471938582097!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00216227975384774!GO:0030659;cytoplasmic vesicle membrane;0.00217817395491682!GO:0045786;negative regulation of progression through cell cycle;0.00224092300979618!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00233193044816201!GO:0043492;ATPase activity, coupled to movement of substances;0.00239545952724945!GO:0005765;lysosomal membrane;0.00240672815269631!GO:0043681;protein import into mitochondrion;0.00254303634597316!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00258582153166105!GO:0045047;protein targeting to ER;0.00258582153166105!GO:0032561;guanyl ribonucleotide binding;0.00267600053431491!GO:0019001;guanyl nucleotide binding;0.00267600053431491!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00281982129962579!GO:0043488;regulation of mRNA stability;0.00282119739622693!GO:0043487;regulation of RNA stability;0.00282119739622693!GO:0045454;cell redox homeostasis;0.00290326361918!GO:0012506;vesicle membrane;0.00290834199285349!GO:0004386;helicase activity;0.00299272492402323!GO:0006323;DNA packaging;0.00311576731683597!GO:0001666;response to hypoxia;0.00324259268889322!GO:0051128;regulation of cellular component organization and biogenesis;0.00325853734081826!GO:0008250;oligosaccharyl transferase complex;0.00329984236588412!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00330509059881354!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00340491706716071!GO:0009081;branched chain family amino acid metabolic process;0.00352677577038142!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00355349202537801!GO:0030134;ER to Golgi transport vesicle;0.00355349202537801!GO:0006518;peptide metabolic process;0.00355349202537801!GO:0030663;COPI coated vesicle membrane;0.00358986863347181!GO:0030126;COPI vesicle coat;0.00358986863347181!GO:0030433;ER-associated protein catabolic process;0.00358986863347181!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00358986863347181!GO:0001558;regulation of cell growth;0.00367223131901845!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00370492545358169!GO:0003729;mRNA binding;0.00370850094814378!GO:0046848;hydroxyapatite binding;0.00375784154422799!GO:0006118;electron transport;0.00389750437922865!GO:0046474;glycerophospholipid biosynthetic process;0.00405525597490064!GO:0008361;regulation of cell size;0.00406309077875067!GO:0003746;translation elongation factor activity;0.00420437561963449!GO:0006892;post-Golgi vesicle-mediated transport;0.00426489536863372!GO:0030127;COPII vesicle coat;0.00428764509087205!GO:0012507;ER to Golgi transport vesicle membrane;0.00428764509087205!GO:0006402;mRNA catabolic process;0.00430821089782077!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00430934608079674!GO:0016049;cell growth;0.0045235128827531!GO:0030137;COPI-coated vesicle;0.00481523771136969!GO:0030132;clathrin coat of coated pit;0.00495539978450832!GO:0006635;fatty acid beta-oxidation;0.0050038858725662!GO:0008186;RNA-dependent ATPase activity;0.00518014314718269!GO:0006414;translational elongation;0.00538559721129256!GO:0046930;pore complex;0.00542249777013844!GO:0030968;unfolded protein response;0.00542249777013844!GO:0051168;nuclear export;0.00565755059475477!GO:0005885;Arp2/3 protein complex;0.00568028087998685!GO:0008312;7S RNA binding;0.00569076004285773!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00581738108067919!GO:0006984;ER-nuclear signaling pathway;0.00603658772467762!GO:0044433;cytoplasmic vesicle part;0.00614403769880252!GO:0018196;peptidyl-asparagine modification;0.0061734184633678!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0061734184633678!GO:0007243;protein kinase cascade;0.00622372302608256!GO:0030660;Golgi-associated vesicle membrane;0.00632178343635505!GO:0006066;alcohol metabolic process;0.00653061966227546!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00653795153235018!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00677021943115114!GO:0030384;phosphoinositide metabolic process;0.00688176921501789!GO:0031902;late endosome membrane;0.00688210047101884!GO:0030027;lamellipodium;0.00723962989734874!GO:0016787;hydrolase activity;0.00737124511935588!GO:0006979;response to oxidative stress;0.00741078245393923!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00752818796924289!GO:0008610;lipid biosynthetic process;0.00756487946768906!GO:0006417;regulation of translation;0.00770877362254196!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00775373136576875!GO:0050794;regulation of cellular process;0.00787214888720214!GO:0016481;negative regulation of transcription;0.008766951512819!GO:0051540;metal cluster binding;0.00910550140596427!GO:0051536;iron-sulfur cluster binding;0.00910550140596427!GO:0005869;dynactin complex;0.00933622495769608!GO:0043284;biopolymer biosynthetic process;0.00933622495769608!GO:0051028;mRNA transport;0.00933622495769608!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.009423613678027!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.009423613678027!GO:0008307;structural constituent of muscle;0.00976278344487238!GO:0006401;RNA catabolic process;0.00978191064455075!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00992930013875003!GO:0030140;trans-Golgi network transport vesicle;0.0102745672231579!GO:0006354;RNA elongation;0.0106942359794818!GO:0015631;tubulin binding;0.0108514170428262!GO:0048487;beta-tubulin binding;0.010929054287357!GO:0016779;nucleotidyltransferase activity;0.0109446706823482!GO:0017022;myosin binding;0.0111468345730988!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0114056875294599!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0114056875294599!GO:0006595;polyamine metabolic process;0.0116324311874767!GO:0051087;chaperone binding;0.0119963475122203!GO:0050789;regulation of biological process;0.0120323353719341!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0121987944586809!GO:0008154;actin polymerization and/or depolymerization;0.0126312540427266!GO:0008287;protein serine/threonine phosphatase complex;0.0126312540427266!GO:0040008;regulation of growth;0.0127024311264151!GO:0051252;regulation of RNA metabolic process;0.0127351393911529!GO:0050811;GABA receptor binding;0.012774142333749!GO:0004004;ATP-dependent RNA helicase activity;0.0128622255632902!GO:0043022;ribosome binding;0.013564687593881!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0138599772920685!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0140447483747314!GO:0007034;vacuolar transport;0.0143022651057102!GO:0035258;steroid hormone receptor binding;0.0144516389393667!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0154830421134471!GO:0031326;regulation of cellular biosynthetic process;0.0162988248664233!GO:0030125;clathrin vesicle coat;0.0164633871913712!GO:0030665;clathrin coated vesicle membrane;0.0164633871913712!GO:0031032;actomyosin structure organization and biogenesis;0.0166590545935479!GO:0009083;branched chain family amino acid catabolic process;0.0170545103507251!GO:0005862;muscle thin filament tropomyosin;0.0172276741003498!GO:0032787;monocarboxylic acid metabolic process;0.0177597983314613!GO:0007006;mitochondrial membrane organization and biogenesis;0.0192175576884998!GO:0015036;disulfide oxidoreductase activity;0.0193521719286606!GO:0031529;ruffle organization and biogenesis;0.0197911539935468!GO:0046489;phosphoinositide biosynthetic process;0.0204005423523427!GO:0016408;C-acyltransferase activity;0.0205223924402129!GO:0030666;endocytic vesicle membrane;0.0207527411012579!GO:0030145;manganese ion binding;0.0207797965970791!GO:0030119;AP-type membrane coat adaptor complex;0.0209182634278481!GO:0004722;protein serine/threonine phosphatase activity;0.0209182634278481!GO:0008139;nuclear localization sequence binding;0.0211058362387384!GO:0005083;small GTPase regulator activity;0.0212390447035629!GO:0003690;double-stranded DNA binding;0.0213489480453079!GO:0030880;RNA polymerase complex;0.0220101694099596!GO:0006626;protein targeting to mitochondrion;0.0225399624526933!GO:0030041;actin filament polymerization;0.0226602737065431!GO:0006376;mRNA splice site selection;0.0227767291479772!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0227767291479772!GO:0005912;adherens junction;0.0238467345934061!GO:0017166;vinculin binding;0.0252959592748485!GO:0008286;insulin receptor signaling pathway;0.0254201263790999!GO:0006006;glucose metabolic process;0.0256027793423584!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0266107790459339!GO:0033043;regulation of organelle organization and biogenesis;0.0266107790459339!GO:0006509;membrane protein ectodomain proteolysis;0.0268327966449833!GO:0033619;membrane protein proteolysis;0.0268327966449833!GO:0000096;sulfur amino acid metabolic process;0.0278941714646441!GO:0046983;protein dimerization activity;0.0279987050789073!GO:0019511;peptidyl-proline hydroxylation;0.0281572935624942!GO:0018208;peptidyl-proline modification;0.0281572935624942!GO:0019471;4-hydroxyproline metabolic process;0.0281572935624942!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0281572935624942!GO:0003711;transcription elongation regulator activity;0.0285058648581778!GO:0048154;S100 beta binding;0.0285058648581778!GO:0033673;negative regulation of kinase activity;0.029129924439995!GO:0006469;negative regulation of protein kinase activity;0.029129924439995!GO:0044449;contractile fiber part;0.0295345101161381!GO:0051726;regulation of cell cycle;0.0296145259161928!GO:0046467;membrane lipid biosynthetic process;0.0298918957405504!GO:0005684;U2-dependent spliceosome;0.0299289868911304!GO:0000074;regulation of progression through cell cycle;0.0305401039324477!GO:0051539;4 iron, 4 sulfur cluster binding;0.0329402491603106!GO:0003899;DNA-directed RNA polymerase activity;0.0329402491603106!GO:0003756;protein disulfide isomerase activity;0.0329458064134137!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0329458064134137!GO:0000049;tRNA binding;0.0333670829936229!GO:0006465;signal peptide processing;0.0345591556054905!GO:0043034;costamere;0.0349240754220556!GO:0009889;regulation of biosynthetic process;0.0358017949173874!GO:0030131;clathrin adaptor complex;0.0358017949173874!GO:0004300;enoyl-CoA hydratase activity;0.0368397968316572!GO:0032507;maintenance of cellular protein localization;0.0372627258518189!GO:0001725;stress fiber;0.0372673938233264!GO:0032432;actin filament bundle;0.0372673938233264!GO:0006839;mitochondrial transport;0.037283631265784!GO:0005865;striated muscle thin filament;0.0372938788451655!GO:0006383;transcription from RNA polymerase III promoter;0.0384700222854721!GO:0048522;positive regulation of cellular process;0.0389316661587461!GO:0008017;microtubule binding;0.0390161141820752!GO:0022406;membrane docking;0.0393218172037528!GO:0048278;vesicle docking;0.0393218172037528!GO:0045892;negative regulation of transcription, DNA-dependent;0.0393218172037528!GO:0009100;glycoprotein metabolic process;0.0398063590521901!GO:0007049;cell cycle;0.0399137504733265!GO:0005777;peroxisome;0.0404701813750118!GO:0042579;microbody;0.0404701813750118!GO:0015923;mannosidase activity;0.0406550807544508!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0407548618637189!GO:0000428;DNA-directed RNA polymerase complex;0.0407548618637189!GO:0019395;fatty acid oxidation;0.0407725848843279!GO:0016836;hydro-lyase activity;0.0411454611614026!GO:0016405;CoA-ligase activity;0.0412075808061321!GO:0006904;vesicle docking during exocytosis;0.0413065887749239!GO:0009967;positive regulation of signal transduction;0.0425783933060481!GO:0005784;translocon complex;0.0434681611957187!GO:0031625;ubiquitin protein ligase binding;0.0444730323375131!GO:0030518;steroid hormone receptor signaling pathway;0.0449198777801693!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0449613606924484!GO:0006974;response to DNA damage stimulus;0.0449846025044216!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0453023708949056!GO:0051235;maintenance of localization;0.0453279107822299!GO:0044255;cellular lipid metabolic process;0.0453279107822299!GO:0031327;negative regulation of cellular biosynthetic process;0.0457592120577445!GO:0030911;TPR domain binding;0.0471031869282653!GO:0042147;retrograde transport, endosome to Golgi;0.0471738809122035!GO:0030832;regulation of actin filament length;0.0474306270145682!GO:0065004;protein-DNA complex assembly;0.0475094616821211!GO:0051276;chromosome organization and biogenesis;0.047810092489283!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.047968471663413!GO:0006767;water-soluble vitamin metabolic process;0.0487557494947664
|sample_id=10199
|sample_note=
|sample_sex=M
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=ZIC1..3:9.14687632592;STAT1,3:5.44637765534;ATF6:2.70923967692;SOX5:2.34769363654;SNAI1..3:2.31762648845;POU6F1:2.11445765184;ARID5B:2.04260196584;ZEB1:1.94899684663;ALX1:1.8113650268;PAX6:1.71190842918;XBP1:1.68072742916;TFAP4:1.55904160528;GLI1..3:1.517922809;HOX{A6,A7,B6,B7}:1.50905477435;LMO2:1.45068782967;T:1.44688191094;FOXA2:1.35130653729;MYOD1:1.3296432267;FOXQ1:1.32947420672;IKZF1:1.30661728523;AR:1.26398747133;HAND1,2:1.19819756993;AIRE:1.19267410567;NFIL3:1.04595188105;TGIF1:0.958441176657;TFAP2{A,C}:0.957723389729;ESRRA:0.914564498721;TLX2:0.904835025065;CDC5L:0.896900278397;CUX2:0.894505125553;TBP:0.884123722363;TFCP2:0.860348051639;MEF2{A,B,C,D}:0.822575285258;NFIX:0.783408669508;TLX1..3_NFIC{dimer}:0.762967811112;POU2F1..3:0.728572005623;FOX{I1,J2}:0.700342080761;TBX4,5:0.683450818572;HES1:0.67627339824;FOX{D1,D2}:0.675322042212;HIC1:0.664216128354;SP1:0.646893184299;NR5A1,2:0.643961734359;NANOG:0.638458962208;NR1H4:0.616409986006;IRF7:0.578221474888;FOXL1:0.555727126021;FOX{F1,F2,J1}:0.548270365842;BREu{core}:0.530287192235;MTF1:0.52499991035;MTE{core}:0.494210154939;MAFB:0.486784219954;MYFfamily:0.484853999483;EP300:0.423074309325;CEBPA,B_DDIT3:0.414343205534;SPZ1:0.4020053689;XCPE1{core}:0.371034595136;ESR1:0.351961584092;FOXO1,3,4:0.327513372095;FOXN1:0.326244424536;NKX2-3_NKX2-5:0.324881430178;HMX1:0.321189463967;GTF2I:0.311591878488;NHLH1,2:0.287341956581;TFAP2B:0.286108771376;HIF1A:0.267103092671;EBF1:0.259114754251;PATZ1:0.254751400479;MAZ:0.250190548295;DMAP1_NCOR{1,2}_SMARC:0.247367105247;NR6A1:0.238698281638;ZNF148:0.223866085788;LHX3,4:0.219308787642;NFATC1..3:0.215856494243;NKX2-1,4:0.172524647631;PBX1:0.163778681249;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.159534113102;REST:0.143619316507;GATA6:0.136359257956;ALX4:0.135124669913;GCM1,2:0.113715334214;ETS1,2:0.0955043026305;GTF2A1,2:0.0764169477658;RXRA_VDR{dimer}:0.0607820008847;SPI1:0.0410047433921;MYBL2:0.0137155011941;FOXD3:0.00241141243362;ZNF143:0.000344136596265;HOX{A4,D4}:-0.00129142097461;VSX1,2:-0.0122366354315;IRF1,2:-0.0170704987315;ZBTB6:-0.0358825322816;SOX2:-0.0467323054664;ATF2:-0.0497124436113;POU5F1:-0.0525277273996;ZNF423:-0.0542171064074;HNF1A:-0.0811127915805;RUNX1..3:-0.099139349671;CRX:-0.103612729216;TEAD1:-0.109415170078;PRDM1:-0.113368431576;PAX5:-0.136286146821;bHLH_family:-0.141773426223;ZNF384:-0.15872582658;BPTF:-0.173401652324;MED-1{core}:-0.180471309405;HNF4A_NR2F1,2:-0.180865398341;GATA4:-0.182824793811;SRF:-0.187372035654;PDX1:-0.212149851731;SPIB:-0.2130768684;NKX3-1:-0.238806817439;RBPJ:-0.243398662418;HOXA9_MEIS1:-0.264714732859;NKX6-1,2:-0.269224320568;KLF4:-0.282935474662;ZNF238:-0.285399468887;YY1:-0.288582246237;NFKB1_REL_RELA:-0.306510960663;ELF1,2,4:-0.324382942569;DBP:-0.354640046982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.367301235386;SOX17:-0.368960577092;ZFP161:-0.388531257263;GFI1B:-0.418684404261;NKX3-2:-0.420415430537;MZF1:-0.432387871861;SOX{8,9,10}:-0.453677690708;SMAD1..7,9:-0.488436164082;UFEwm:-0.509747460313;STAT2,4,6:-0.51915892206;RREB1:-0.519161829098;HLF:-0.519579604656;TAL1_TCF{3,4,12}:-0.524224645305;ADNP_IRX_SIX_ZHX:-0.54407029223;FOSL2:-0.545931774674;IKZF2:-0.550283118617;FOS_FOS{B,L1}_JUN{B,D}:-0.569648778579;EGR1..3:-0.593769926387;CDX1,2,4:-0.617437369518;TP53:-0.61851213644;FOXM1:-0.64152736922;SREBF1,2:-0.649260102559;NFY{A,B,C}:-0.663453510333;FOXP3:-0.684722934016;NRF1:-0.709717098763;BACH2:-0.710560220904;OCT4_SOX2{dimer}:-0.723592196105;NANOG{mouse}:-0.744045897283;NFE2L1:-0.747850395069;HOX{A5,B5}:-0.748791134094;TOPORS:-0.750421219661;PRRX1,2:-0.763299985615;FOXP1:-0.785119620892;NFE2:-0.791320599353;JUN:-0.793545663142;NKX2-2,8:-0.808299930007;RFX1:-0.840278227405;LEF1_TCF7_TCF7L1,2:-0.841133540987;GFI1:-0.854433255371;GZF1:-0.863566511576;ELK1,4_GABP{A,B1}:-0.892457097783;NR3C1:-0.902150534523;ONECUT1,2:-0.921230699209;ZBTB16:-0.921595617164;TEF:-0.929316278983;ATF5_CREB3:-0.964809934401;RXR{A,B,G}:-0.974028241859;ATF4:-0.983551232357;CREB1:-1.04982338563;RFX2..5_RFXANK_RFXAP:-1.06276770632;RORA:-1.08212569033;HBP1_HMGB_SSRP1_UBTF:-1.12842976475;PPARG:-1.1300648506;NFE2L2:-1.14847805466;PAX4:-1.15331562536;STAT5{A,B}:-1.16401311574;EVI1:-1.20255356925;AHR_ARNT_ARNT2:-1.23725467257;EN1,2:-1.28880520194;PAX3,7:-1.29448684595;PAX2:-1.33613820928;TFDP1:-1.35422645658;E2F1..5:-1.36580147311;POU3F1..4:-1.44483179941;HSF1,2:-1.45242123681;POU1F1:-1.47250562458;PAX1,9:-1.53777937345;PITX1..3:-1.53991899291;MYB:-1.55820731468;PAX8:-1.60995788552;HMGA1,2:-1.82381794812
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10199-103F1;search_select_hide=table117:FF:10199-103F1
}}
}}

Latest revision as of 13:55, 3 June 2020

Name:parotid gland, adult
Species:Human (Homo sapiens)
Library ID:CNhs12849
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexM
age23
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234190-50
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005196
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12849 CAGE DRX008704 DRR009576
Accession ID Hg19

Library idBAMCTSS
CNhs12849 DRZ001001 DRZ002386
Accession ID Hg38

Library idBAMCTSS
CNhs12849 DRZ012351 DRZ013736
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005196
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10060 RNA-Seq DRX057117 DRR062876
Accession ID Hg19

Library idBAMCTSS
RDhi10060 DRZ007952


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-9.34345e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.423
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
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C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12849

Jaspar motifP-value
MA0002.20.0617
MA0003.10.0773
MA0004.10.527
MA0006.10.0957
MA0007.10.942
MA0009.10.361
MA0014.10.929
MA0017.10.0218
MA0018.21.32328e-4
MA0019.10.568
MA0024.10.0443
MA0025.10.817
MA0027.10.704
MA0028.10.0104
MA0029.10.655
MA0030.10.145
MA0031.10.567
MA0035.20.458
MA0038.10.203
MA0039.20.885
MA0040.10.838
MA0041.10.147
MA0042.10.413
MA0043.10.00174
MA0046.10.444
MA0047.20.129
MA0048.10.00506
MA0050.10.392
MA0051.10.862
MA0052.10.00639
MA0055.10.0432
MA0057.10.234
MA0058.10.246
MA0059.10.614
MA0060.10.0159
MA0061.10.438
MA0062.21.55112e-5
MA0065.20.225
MA0066.10.617
MA0067.17.79892e-4
MA0068.10.229
MA0069.10.758
MA0070.10.76
MA0071.10.986
MA0072.10.655
MA0073.10.287
MA0074.10.996
MA0076.10.00486
MA0077.10.423
MA0078.10.488
MA0079.20.49
MA0080.20.166
MA0081.10.0227
MA0083.10.295
MA0084.10.88
MA0087.10.102
MA0088.10.892
MA0090.10.513
MA0091.10.778
MA0092.10.298
MA0093.10.493
MA0099.22.6261e-12
MA0100.10.0615
MA0101.10.439
MA0102.20.188
MA0103.11.3032e-6
MA0104.20.0816
MA0105.10.039
MA0106.10.738
MA0107.10.297
MA0108.20.00482
MA0111.10.978
MA0112.20.00802
MA0113.10.115
MA0114.10.782
MA0115.10.989
MA0116.10.559
MA0117.10.376
MA0119.10.451
MA0122.10.868
MA0124.10.455
MA0125.10.299
MA0131.10.161
MA0135.10.729
MA0136.10.00452
MA0137.22.30234e-10
MA0138.20.118
MA0139.15.57675e-7
MA0140.10.758
MA0141.10.236
MA0142.10.479
MA0143.10.00467
MA0144.11.6874e-10
MA0145.10.0993
MA0146.10.582
MA0147.10.0695
MA0148.10.22
MA0149.10.965
MA0150.18.32031e-4
MA0152.10.938
MA0153.10.116
MA0154.10.257
MA0155.10.756
MA0156.10.213
MA0157.10.471
MA0159.10.225
MA0160.10.718
MA0162.10.972
MA0163.10.0424
MA0164.10.395
MA0258.10.188
MA0259.10.101



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12849

Novel motifP-value
10.459
100.278
1000.91
1010.828
1020.805
1030.588
1040.279
1050.703
1060.127
1070.0898
1080.305
1090.836
110.71
1100.726
1110.463
1120.171
1130.706
1140.594
1150.992
1160.841
1170.415
1180.522
1190.304
120.108
1200.0274
1210.479
1220.478
1230.798
1240.737
1250.826
1260.0852
1270.388
1280.0848
1290.559
130.715
1300.0741
1310.874
1320.219
1330.0867
1340.154
1350.534
1360.778
1370.887
1380.657
1390.383
140.552
1400.798
1410.355
1420.524
1430.806
1440.748
1450.528
1460.204
1470.761
1480.916
1490.181
150.487
1500.801
1510.52
1520.047
1530.0786
1540.97
1550.644
1560.168
1570.314
1580.62
1590.799
160.439
1600.501
1610.733
1620.185
1630.8
1640.269
1650.932
1660.907
1670.548
1680.234
1690.0368
170.4
180.953
190.293
25.35026e-6
200.321
210.351
220.317
230.35
240.458
250.985
260.384
270.156
280.978
290.837
30.941
300.00871
310.373
329.13836e-8
330.712
340.768
350.957
360.00347
370.916
380.43
390.217
40.533
400.886
410.294
420.8
430.554
440.0299
450.0881
460.603
470.996
480.782
490.859
50.0524
500.297
510.734
520.224
530.959
540.566
550.632
560.539
570.64
580.565
590.0398
60.8
600.145
610.903
620.686
630.112
640.851
650.294
660.379
670.686
680.406
690.609
70.538
700.132
710.884
720.735
730.221
740.663
750.894
760.266
770.142
780.426
790.411
80.462
800.803
810.637
820.281
830.639
840.651
850.0283
860.651
870.733
880.786
890.193
90.696
900.415
910.652
920.257
930.902
940.194
950.288
960.776
970.646
980.67
990.265



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12849


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0001831 (parotid gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0001829 (major salivary gland)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0004089 (midface)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0001456 (face)
0002330 (exocrine system)
0001567 (cheek)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010199 (human parotid gland - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008801 (parotid gland primordium)
UBERON:0010316 (germ layer / neural crest)

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