FFCP PHASE1:Hg19::chr11:131941837..131941859,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:131941837..131941859,- | |||
|description=CAGE_peak_at_chr11:131941837..131941859,- | |description=CAGE_peak_at_chr11:131941837..131941859,- | ||
|id=chr11:131941837..131941859,- | |id=chr11:131941837..131941859,- | ||
|ontology_enrichment_celltype=CL:0000055!4.93e-14!180;CL:0000680!2.76e-13!57;CL:0000056!2.76e-13!57;CL:0000355!2.76e-13!57;CL:0002159!1.44e-12!13;CL:0000359!9.40e-12!32;CL:0000187!1.73e-11!54;CL:0000393!7.34e-11!60;CL:0000211!7.34e-11!60;CL:0000220!8.16e-11!246;CL:0002321!1.28e-10!248;CL:0000192!1.82e-10!42;CL:0000514!1.82e-10!42;CL:0002371!2.27e-10!591;CL:0000183!4.81e-10!59;CL:0002368!7.01e-10!13;CL:0002594!1.65e-09!4;CL:0000144!4.13e-09!625;CL:0000548!8.38e-09!679;CL:0000004!8.38e-09!679;CL:0000255!8.38e-09!679;CL:0002202!1.05e-08!9;CL:0002632!1.05e-08!9;CL:0000012!1.17e-08!682;CL:0000068!9.78e-08!3;CL:0000069!9.78e-08!3;CL:0000307!9.78e-08!3;CL:0000377!9.78e-08!3;CL:0002166!1.30e-07!3;CL:0002620!1.32e-07!23;CL:0002328!1.79e-07!3;CL:0000362!5.51e-07!8;CL:0000035!5.63e-07!20;CL:0000003!7.40e-07!722;CL:0002621!8.24e-07!3 | |ontology_enrichment_celltype=CL:0000055!4.93e-14!180;CL:0000680!2.76e-13!57;CL:0000056!2.76e-13!57;CL:0000355!2.76e-13!57;CL:0002159!1.44e-12!13;CL:0000359!9.40e-12!32;CL:0000187!1.73e-11!54;CL:0000393!7.34e-11!60;CL:0000211!7.34e-11!60;CL:0000220!8.16e-11!246;CL:0002321!1.28e-10!248;CL:0000192!1.82e-10!42;CL:0000514!1.82e-10!42;CL:0002371!2.27e-10!591;CL:0000183!4.81e-10!59;CL:0002368!7.01e-10!13;CL:0002594!1.65e-09!4;CL:0000144!4.13e-09!625;CL:0000548!8.38e-09!679;CL:0000004!8.38e-09!679;CL:0000255!8.38e-09!679;CL:0002202!1.05e-08!9;CL:0002632!1.05e-08!9;CL:0000012!1.17e-08!682;CL:0000068!9.78e-08!3;CL:0000069!9.78e-08!3;CL:0000307!9.78e-08!3;CL:0000377!9.78e-08!3;CL:0002166!1.30e-07!3;CL:0002620!1.32e-07!23;CL:0002328!1.79e-07!3;CL:0000362!5.51e-07!8;CL:0000035!5.63e-07!20;CL:0000003!7.40e-07!722;CL:0002621!8.24e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000307;9.51e-22;3!CL:0000244;4.23e-17;4!CL:0000731;4.23e-17;4!CL:0002368;1.23e-13;13!CL:0002202;9.29e-13;9!CL:0002632;9.29e-13;9!CL:0002159;9.54e-13;14!CL:0002539;7.91e-12;10!CL:0002166;2.26e-10;3!CL:0000359;7.13e-10;32!CL:0000228;2.12e-08;1!CL:0002372;2.12e-08;1!CL:0002594;3.35e-08;4!CL:0000056;5.42e-08;4!CL:0000362;7.06e-08;9!CL:0000192;7.85e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,8.90e-22,3;CL:0000069,8.90e-22,3;CL:0000307,8.90e-22,3;CL:0000377,8.90e-22,3;CL:0000244,4.49e-17,4;CL:0000731,4.49e-17,4;CL:0002368,1.24e-13,13;CL:0002202,9.32e-13,9;CL:0002632,9.32e-13,9;CL:0002159,1.14e-12,14;CL:0002539,4.90e-12,10;CL:0002166,2.49e-10,3;CL:0000359,2.65e-10,32;CL:0002321,1.04e-09,250;CL:0000680,1.17e-08,58;CL:0000056,1.17e-08,58;CL:0000355,1.17e-08,58;CL:0000228,1.59e-08,1;CL:0002372,1.59e-08,1;CL:0002594,4.71e-08,4;CL:0000515,5.62e-08,4;CL:0000362,7.95e-08,9;CL:0002076,1.59e-07,42;CL:0000192,1.87e-07,43;CL:0000514,1.87e-07,43;CL:0000187,2.58e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000377;9.51e-22;3!CL:0000515;5.42e-08;4!CL:0000514;7.85e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!1.53e-17!82;UBERON:0000914!1.85e-14!83;UBERON:0002329!1.85e-14!83;UBERON:0003077!1.85e-14!83;UBERON:0003059!1.85e-14!83;UBERON:0007282!1.85e-14!83;UBERON:0009618!1.85e-14!83;UBERON:0007285!1.85e-14!83;UBERON:0001134!5.32e-12!61;UBERON:0002036!5.32e-12!61;UBERON:0003082!5.32e-12!61;UBERON:0004290!6.46e-12!70;UBERON:0002097!1.02e-11!40;UBERON:0002385!2.01e-11!63;UBERON:0001015!2.01e-11!63;UBERON:0000383!2.01e-11!63;UBERON:0002199!2.71e-11!45;UBERON:0002416!2.71e-11!45;UBERON:0003102!6.24e-11!95;UBERON:0000475!3.07e-10!365;UBERON:0001310!1.65e-09!4;UBERON:0001637!2.34e-09!42;UBERON:0003509!2.34e-09!42;UBERON:0004572!2.34e-09!42;UBERON:0002185!4.94e-09!4;UBERON:0005256!2.73e-08!143;UBERON:0001981!7.86e-08!60;UBERON:0007500!7.86e-08!60;UBERON:0004537!7.86e-08!60;UBERON:0006965!7.86e-08!60;UBERON:0000483!7.95e-08!309;UBERON:0000365!9.01e-08!5;UBERON:0000119!1.27e-07!312;UBERON:0004815!1.79e-07!3;UBERON:0002031!1.79e-07!3;UBERON:0007196!6.84e-07!14;UBERON:0001558!6.84e-07!14;UBERON:0002049!7.04e-07!79;UBERON:0007798!7.04e-07!79;UBERON:0004573!8.04e-07!33;UBERON:0004571!8.04e-07!33;UBERON:0001949!8.24e-07!3;UBERON:0000467!8.37e-07!625;UBERON:0000480!9.30e-07!626;UBERON:0000490!9.63e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;8.59e-14;5!UBERON:0004237;7.91e-12;10!UBERON:0004695;7.91e-12;10!UBERON:0002111;7.91e-12;10!UBERON:0004178;7.91e-12;10!UBERON:0005910;1.40e-11;6!UBERON:0000486;7.01e-10;12!UBERON:0003126;1.21e-09;7!UBERON:0001005;1.21e-09;7!UBERON:0001310;3.35e-08;4!UBERON:0001003;4.92e-08;15!UBERON:0007376;4.92e-08;15!UBERON:0001708;5.42e-08;4!UBERON:0008895;5.42e-08;4!UBERON:0001135;6.30e-08;15!UBERON:0002385;6.65e-08;31!UBERON:0001015;6.65e-08;31!UBERON:0000383;6.65e-08;31!UBERON:0007196;1.03e-07;15!UBERON:0001558;1.03e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.10e-14,83;UBERON:0000365,9.00e-14,5;UBERON:0004237,4.90e-12,10;UBERON:0004695,4.90e-12,10;UBERON:0002111,4.90e-12,10;UBERON:0004178,4.90e-12,10;UBERON:0005910,1.45e-11,6;UBERON:0003126,1.18e-09,7;UBERON:0001005,1.18e-09,7;UBERON:0002329,1.66e-08,71;UBERON:0003059,1.66e-08,71;UBERON:0007282,1.66e-08,71;UBERON:0004290,1.66e-08,71;UBERON:0009618,1.66e-08,71;UBERON:0003077,2.30e-08,72;UBERON:0007285,2.30e-08,72;UBERON:0007524,3.15e-08,73;UBERON:0001135,4.62e-08,15;UBERON:0001310,4.71e-08,4;UBERON:0001003,5.16e-08,15;UBERON:0007376,5.16e-08,15;UBERON:0007383,5.16e-08,15;UBERON:0001134,5.21e-08,62;UBERON:0002036,5.21e-08,62;UBERON:0003082,5.21e-08,62;UBERON:0001708,5.82e-08,4;UBERON:0008895,5.82e-08,4;UBERON:0002385,1.02e-07,64;UBERON:0001015,1.02e-07,64;UBERON:0000383,1.02e-07,64;UBERON:0007196,1.03e-07,15;UBERON:0001558,1.03e-07,15;UBERON:0001637,1.19e-07,42;UBERON:0003509,1.19e-07,42;UBERON:0004572,1.19e-07,42;UBERON:0007503,1.35e-07,78 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46062018077475,0.487932798790507,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.662045904066094,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0.408308342509787,0.491337269247072,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0.358779271377724,0,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0.302256294682921,0.169560592310488,0.193260853163297,0.272746120590835,1.43402297694502,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.31700342490351,2.24803506515239,0.502644862058154,0.370353780634118,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,1.00789276919316,1.55952606966625,0.179117045405697,0,1.91691339582606,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.723906533337896,0,1.07436577943937,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.737476674166813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710246901252508,0.164254312027618,0,0,0,1.20303882181971,0,0,0,0,0,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0,3.44554323735377,0,0,2.51849877464512,2.7881490806424,0,0,1.73986598415015,1.29726953372744,0.143124886741991,0,0,0,0.255897791311334,0,0.636406495851874,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,1.01455188481352,2.478587984798,0.845086807596724,0.143411352204052,0,0.7133421029625,0,0,0,0,0,1.34710957815717,1.34060455107157,1.08890984861323,0,2.58303223602738,0,2.66058092122005,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443565449968902,0.318593534327405,0,0.310525913752519,0.414706207840855,1.06336685823198,0.521745061811734,0,0,0.406870733204662,0,0,0.928067519756987,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569822880276821,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46062018077475,0.487932798790507,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.662045904066094,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0.408308342509787,0.491337269247072,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0.358779271377724,0,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0.302256294682921,0.169560592310488,0.193260853163297,0.272746120590835,1.43402297694502,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.31700342490351,2.24803506515239,0.502644862058154,0.370353780634118,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,1.00789276919316,1.55952606966625,0.179117045405697,0,1.91691339582606,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.723906533337896,0,1.07436577943937,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.737476674166813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710246901252508,0.164254312027618,0,0,0,1.20303882181971,0,0,0,0,0,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0,3.44554323735377,0,0,2.51849877464512,2.7881490806424,0,0,1.73986598415015,1.29726953372744,0.143124886741991,0,0,0,0.255897791311334,0,0.636406495851874,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,1.01455188481352,2.478587984798,0.845086807596724,0.143411352204052,0,0.7133421029625,0,0,0,0,0,1.34710957815717,1.34060455107157,1.08890984861323,0,2.58303223602738,0,2.66058092122005,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443565449968902,0.318593534327405,0,0.310525913752519,0.414706207840855,1.06336685823198,0.521745061811734,0,0,0.406870733204662,0,0,0.928067519756987,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569822880276821,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:131941837..131941859,- | |short_description=p@chr11:131941837..131941859,- | ||
}} | }} |
Latest revision as of 20:04, 23 July 2015
Short description: | p@chr11:131941837..131941859, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:131941837..131941859, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 8.90e-22 | 3 |
branched duct epithelial cell | 8.90e-22 | 3 |
tracheal epithelial cell | 8.90e-22 | 3 |
tracheoblast | 8.90e-22 | 3 |
transitional epithelial cell | 4.49e-17 | 4 |
urothelial cell | 4.49e-17 | 4 |
respiratory epithelial cell | 1.24e-13 | 13 |
epithelial cell of tracheobronchial tree | 9.32e-13 | 9 |
epithelial cell of lower respiratory tract | 9.32e-13 | 9 |
general ecto-epithelial cell | 1.14e-12 | 14 |
aortic smooth muscle cell | 4.90e-12 | 10 |
epithelial cell of Malassez | 2.49e-10 | 3 |
vascular associated smooth muscle cell | 2.65e-10 | 32 |
embryonic cell | 1.04e-09 | 250 |
muscle precursor cell | 1.17e-08 | 58 |
myoblast | 1.17e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.17e-08 | 58 |
multinucleate cell | 1.59e-08 | 1 |
myotube | 1.59e-08 | 1 |
smooth muscle cell of the umbilical artery | 4.71e-08 | 4 |
skeletal muscle myoblast | 5.62e-08 | 4 |
epidermal cell | 7.95e-08 | 9 |
endo-epithelial cell | 1.59e-07 | 42 |
smooth muscle cell | 1.87e-07 | 43 |
smooth muscle myoblast | 1.87e-07 | 43 |
muscle cell | 2.58e-07 | 55 |