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{{f5samples
{{f5samples
|id=FF:10486-107A9
|DRA_sample_Accession=CAGE@SAMD00004799
|name=squamous cell lung carcinoma cell line:EBC-1, biol_rep1
|accession_numbers=CAGE;DRX008017;DRR008889;DRZ000314;DRZ001699;DRZ011664;DRZ013049
|sample_id=10486
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=107A9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1749
|rna_position=A9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0100353,FF:0101120,FF:0100762,FF:0102202,FF:0103001
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1965
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=69
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=1.55000
|rna_od260/280=2.08000
|sample_cell_type=unclassifiable
|sample_cell_line=EBC-1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=squamous cell lung carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=27.23700
|rna_concentration=1.08948
|sample_note=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,DOID:7
|sample_description=
 
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.ctss.bed.gz
|id=FF:10486-107A9
|is_a=EFO:0002091;;FF:0000210;;FF:0103001
|is_obsolete=
|library_id=CNhs11273
|library_id_phase_based=2:CNhs11273
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10486
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10486
|name=squamous cell lung carcinoma cell line:EBC-1
|namespace=FANTOM5
|part_of=
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|rna_box=107
|rna_catalog_number=
|rna_concentration=1.08948
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.55
|rna_od260/280=2.08
|rna_position=A9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107A9
|rna_weight_ug=27.237
|sample_age=69
|sample_category=cell lines
|sample_cell_catalog=RCB1965
|sample_cell_line=EBC-1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=squamous cell lung carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.05101916351277e-273!GO:0043231;intracellular membrane-bound organelle;1.70457420802017e-227!GO:0043227;membrane-bound organelle;1.84217232148045e-227!GO:0043226;organelle;2.41937785967147e-227!GO:0043229;intracellular organelle;1.16293559357367e-226!GO:0005737;cytoplasm;1.04283356586186e-183!GO:0044422;organelle part;6.28597352915808e-157!GO:0044446;intracellular organelle part;2.0129084648919e-155!GO:0044444;cytoplasmic part;5.24341136422658e-130!GO:0032991;macromolecular complex;5.10672259577636e-113!GO:0030529;ribonucleoprotein complex;7.64626995675979e-102!GO:0044237;cellular metabolic process;9.8282099567667e-101!GO:0005634;nucleus;2.45762584482482e-100!GO:0044238;primary metabolic process;6.43003136029542e-99!GO:0043170;macromolecule metabolic process;9.04648706091093e-95!GO:0044428;nuclear part;1.56897530988488e-94!GO:0043233;organelle lumen;1.03542430479347e-87!GO:0031974;membrane-enclosed lumen;1.03542430479347e-87!GO:0003723;RNA binding;5.44323578145192e-85!GO:0005739;mitochondrion;2.35814606811854e-72!GO:0006396;RNA processing;5.33227269454116e-68!GO:0005515;protein binding;1.93643710859504e-64!GO:0010467;gene expression;7.89168095984034e-62!GO:0043283;biopolymer metabolic process;5.4420942136986e-61!GO:0031981;nuclear lumen;3.50361991939448e-57!GO:0005840;ribosome;4.60404934797565e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18201681768271e-56!GO:0006412;translation;1.90303122932211e-55!GO:0031090;organelle membrane;4.87805383569443e-55!GO:0043234;protein complex;9.18107613395787e-55!GO:0015031;protein transport;2.7091848767038e-53!GO:0033036;macromolecule localization;7.48908613866755e-52!GO:0003735;structural constituent of ribosome;4.53959777773323e-49!GO:0019538;protein metabolic process;4.68553684816918e-49!GO:0016071;mRNA metabolic process;1.36712745604556e-47!GO:0045184;establishment of protein localization;1.73951577381976e-47!GO:0008104;protein localization;2.82212743362173e-47!GO:0044429;mitochondrial part;9.27555560799428e-46!GO:0016043;cellular component organization and biogenesis;5.71718010023102e-45!GO:0008380;RNA splicing;6.03818346762453e-44!GO:0044267;cellular protein metabolic process;8.54035988927625e-44!GO:0044260;cellular macromolecule metabolic process;7.8988600709247e-43!GO:0031967;organelle envelope;9.65687244161209e-43!GO:0044249;cellular biosynthetic process;2.25056661119779e-42!GO:0031975;envelope;2.40351715347222e-42!GO:0006397;mRNA processing;1.75416713659068e-41!GO:0033279;ribosomal subunit;4.17696116733747e-41!GO:0009058;biosynthetic process;7.13426550770156e-41!GO:0009059;macromolecule biosynthetic process;2.30281139589144e-40!GO:0005829;cytosol;1.58584663086435e-39!GO:0046907;intracellular transport;1.9285159778825e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.3583278152801e-38!GO:0003676;nucleic acid binding;1.16542884513604e-36!GO:0006886;intracellular protein transport;1.3684809119689e-36!GO:0043228;non-membrane-bound organelle;2.8796179183642e-34!GO:0043232;intracellular non-membrane-bound organelle;2.8796179183642e-34!GO:0005654;nucleoplasm;1.75882588450668e-33!GO:0006996;organelle organization and biogenesis;1.44970343950049e-32!GO:0005681;spliceosome;5.27974902241507e-32!GO:0016070;RNA metabolic process;1.60697039389888e-31!GO:0006259;DNA metabolic process;1.71269196252946e-31!GO:0065003;macromolecular complex assembly;1.81093207057882e-31!GO:0044451;nucleoplasm part;2.03961518154036e-28!GO:0005740;mitochondrial envelope;2.12534217069703e-28!GO:0022607;cellular component assembly;2.60849166526498e-27!GO:0019866;organelle inner membrane;5.45908167247977e-27!GO:0000166;nucleotide binding;8.70940749434669e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.41406268416174e-26!GO:0005730;nucleolus;1.97799054988385e-26!GO:0031966;mitochondrial membrane;2.10727011164253e-26!GO:0005743;mitochondrial inner membrane;3.2841282722099e-25!GO:0051649;establishment of cellular localization;3.53679037973796e-25!GO:0051641;cellular localization;2.45322307417171e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10208302651581e-23!GO:0016462;pyrophosphatase activity;1.20445281778525e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.62120287580206e-23!GO:0017111;nucleoside-triphosphatase activity;2.00855556223614e-23!GO:0012505;endomembrane system;3.40542140042321e-23!GO:0016874;ligase activity;4.52882882371713e-23!GO:0006119;oxidative phosphorylation;5.52293860605142e-23!GO:0044445;cytosolic part;1.21821561451262e-22!GO:0006512;ubiquitin cycle;3.87813918947853e-22!GO:0031980;mitochondrial lumen;2.08833185839969e-21!GO:0005759;mitochondrial matrix;2.08833185839969e-21!GO:0015934;large ribosomal subunit;4.22623850872734e-21!GO:0015935;small ribosomal subunit;4.23755462834594e-21!GO:0042254;ribosome biogenesis and assembly;3.41439035019699e-20!GO:0006974;response to DNA damage stimulus;2.32685388290183e-19!GO:0008135;translation factor activity, nucleic acid binding;3.34064750396112e-19!GO:0044455;mitochondrial membrane part;4.21485446931057e-19!GO:0005761;mitochondrial ribosome;8.15015690093571e-19!GO:0000313;organellar ribosome;8.15015690093571e-19!GO:0022618;protein-RNA complex assembly;9.57899409034446e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.86552100214917e-18!GO:0008134;transcription factor binding;2.39488377361003e-18!GO:0019941;modification-dependent protein catabolic process;2.470289498176e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.470289498176e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.89100281964367e-18!GO:0007049;cell cycle;2.97840100405137e-18!GO:0006457;protein folding;3.08443729547254e-18!GO:0044265;cellular macromolecule catabolic process;3.76517625901898e-18!GO:0044257;cellular protein catabolic process;4.70497223357715e-18!GO:0017076;purine nucleotide binding;5.60641986340887e-18!GO:0032553;ribonucleotide binding;1.07609872934635e-17!GO:0032555;purine ribonucleotide binding;1.07609872934635e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.11411192588426e-17!GO:0006605;protein targeting;1.22734681442125e-17!GO:0043285;biopolymer catabolic process;4.58202995530618e-17!GO:0006281;DNA repair;4.20657147369345e-16!GO:0051186;cofactor metabolic process;4.36746693236705e-16!GO:0005783;endoplasmic reticulum;6.52272838796412e-16!GO:0016887;ATPase activity;2.50382798011704e-15!GO:0044432;endoplasmic reticulum part;2.62692204431252e-15!GO:0006399;tRNA metabolic process;3.28072878130456e-15!GO:0005524;ATP binding;4.20402080869669e-15!GO:0005635;nuclear envelope;5.05665911173333e-15!GO:0005746;mitochondrial respiratory chain;5.05665911173333e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.52974030423662e-15!GO:0030554;adenyl nucleotide binding;6.94622884184341e-15!GO:0005794;Golgi apparatus;8.01535481067982e-15!GO:0032559;adenyl ribonucleotide binding;9.79900367779003e-15!GO:0043412;biopolymer modification;1.04437415389109e-14!GO:0031965;nuclear membrane;1.19774777217556e-14!GO:0048193;Golgi vesicle transport;1.24342687773356e-14!GO:0009057;macromolecule catabolic process;1.31478299723605e-14!GO:0044248;cellular catabolic process;1.61157549573502e-14!GO:0042623;ATPase activity, coupled;1.83185213498925e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.99506391590174e-14!GO:0000375;RNA splicing, via transesterification reactions;1.99506391590174e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.99506391590174e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.78234376405823e-14!GO:0003954;NADH dehydrogenase activity;2.78234376405823e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.78234376405823e-14!GO:0003743;translation initiation factor activity;3.6475369635919e-14!GO:0030163;protein catabolic process;3.6475369635919e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.75817126565685e-14!GO:0048770;pigment granule;6.58805640030006e-14!GO:0042470;melanosome;6.58805640030006e-14!GO:0016192;vesicle-mediated transport;7.05399149016097e-14!GO:0016604;nuclear body;7.8466183283375e-14!GO:0006260;DNA replication;8.35083714173236e-14!GO:0004386;helicase activity;1.274342930598e-13!GO:0051082;unfolded protein binding;1.97181767062042e-13!GO:0006732;coenzyme metabolic process;2.27997061069176e-13!GO:0044453;nuclear membrane part;2.43855415916874e-13!GO:0009719;response to endogenous stimulus;2.46419091673252e-13!GO:0006364;rRNA processing;3.39434813766724e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.46736902995523e-13!GO:0042773;ATP synthesis coupled electron transport;4.46736902995523e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.3040841874254e-13!GO:0016072;rRNA metabolic process;5.41393106403842e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02265172844221e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.19211321168989e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.80522640355994e-12!GO:0045271;respiratory chain complex I;2.80522640355994e-12!GO:0005747;mitochondrial respiratory chain complex I;2.80522640355994e-12!GO:0006464;protein modification process;2.99423018227162e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.33567147906352e-12!GO:0005789;endoplasmic reticulum membrane;3.43329825495821e-12!GO:0008026;ATP-dependent helicase activity;4.8703234981728e-12!GO:0008639;small protein conjugating enzyme activity;5.09279714075112e-12!GO:0022402;cell cycle process;5.18077044609312e-12!GO:0005694;chromosome;5.76552606835482e-12!GO:0005643;nuclear pore;8.1125798429647e-12!GO:0006913;nucleocytoplasmic transport;8.1125798429647e-12!GO:0019787;small conjugating protein ligase activity;9.37654770873543e-12!GO:0006403;RNA localization;1.16030355158474e-11!GO:0004842;ubiquitin-protein ligase activity;1.37433177741915e-11!GO:0006413;translational initiation;1.71721806361712e-11!GO:0050657;nucleic acid transport;2.00406457155059e-11!GO:0051236;establishment of RNA localization;2.00406457155059e-11!GO:0050658;RNA transport;2.00406457155059e-11!GO:0051169;nuclear transport;2.13729984628004e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.89600247005049e-11!GO:0006366;transcription from RNA polymerase II promoter;3.09324935831043e-11!GO:0016607;nuclear speck;3.17533523615116e-11!GO:0065002;intracellular protein transport across a membrane;3.84861787221041e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.83623545927255e-11!GO:0051276;chromosome organization and biogenesis;4.83623545927255e-11!GO:0016881;acid-amino acid ligase activity;5.67658522410111e-11!GO:0003712;transcription cofactor activity;6.95745993822044e-11!GO:0008565;protein transporter activity;7.51801715788871e-11!GO:0043687;post-translational protein modification;8.0542618008452e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.36781934752388e-10!GO:0005768;endosome;1.50562451050315e-10!GO:0051188;cofactor biosynthetic process;3.82108093557656e-10!GO:0006446;regulation of translational initiation;3.96502503833062e-10!GO:0006323;DNA packaging;4.63813473335609e-10!GO:0044427;chromosomal part;6.09502365056193e-10!GO:0006461;protein complex assembly;7.25050565262933e-10!GO:0006163;purine nucleotide metabolic process;7.42875322527181e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.39995677773515e-10!GO:0009259;ribonucleotide metabolic process;8.73609686731445e-10!GO:0012501;programmed cell death;1.50101489578343e-09!GO:0017038;protein import;1.59782646473811e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.68268602647382e-09!GO:0000278;mitotic cell cycle;1.73977222502272e-09!GO:0006164;purine nucleotide biosynthetic process;1.74342420998831e-09!GO:0046930;pore complex;1.79618853806065e-09!GO:0006915;apoptosis;2.12619858741644e-09!GO:0051028;mRNA transport;2.16575528666479e-09!GO:0019829;cation-transporting ATPase activity;2.16575528666479e-09!GO:0016568;chromatin modification;2.64513097348401e-09!GO:0015986;ATP synthesis coupled proton transport;2.82500649760282e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.82500649760282e-09!GO:0016779;nucleotidyltransferase activity;3.45992511890606e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.47274625878937e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.30794972898406e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.30794972898406e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.30794972898406e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.31490852922869e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.31490852922869e-09!GO:0009260;ribonucleotide biosynthetic process;5.14802825483121e-09!GO:0043566;structure-specific DNA binding;5.70192942029964e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.40144242571549e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.69544171080625e-09!GO:0009108;coenzyme biosynthetic process;6.70554036115238e-09!GO:0007005;mitochondrion organization and biogenesis;7.00049002383675e-09!GO:0050794;regulation of cellular process;7.0356480177473e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.71772656365172e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.71772656365172e-09!GO:0009150;purine ribonucleotide metabolic process;8.11345552407936e-09!GO:0009055;electron carrier activity;8.5026122929064e-09!GO:0044440;endosomal part;1.11166021536647e-08!GO:0010008;endosome membrane;1.11166021536647e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16585230608915e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.16585230608915e-08!GO:0009141;nucleoside triphosphate metabolic process;1.38431789608074e-08!GO:0043038;amino acid activation;1.54055250052558e-08!GO:0006418;tRNA aminoacylation for protein translation;1.54055250052558e-08!GO:0043039;tRNA aminoacylation;1.54055250052558e-08!GO:0008219;cell death;1.73206374685876e-08!GO:0016265;death;1.73206374685876e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.95226555715464e-08!GO:0032446;protein modification by small protein conjugation;2.11625179342412e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.26161398974149e-08!GO:0016567;protein ubiquitination;2.32144195623962e-08!GO:0005667;transcription factor complex;3.00017425996457e-08!GO:0019222;regulation of metabolic process;3.35227314668055e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.67951590123855e-08!GO:0006754;ATP biosynthetic process;3.75257391927648e-08!GO:0006753;nucleoside phosphate metabolic process;3.75257391927648e-08!GO:0003899;DNA-directed RNA polymerase activity;3.94258265752826e-08!GO:0009056;catabolic process;4.30897625550272e-08!GO:0008033;tRNA processing;5.90807710680338e-08!GO:0003697;single-stranded DNA binding;6.79484541380232e-08!GO:0046034;ATP metabolic process;8.17705827238518e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.39434382542424e-08!GO:0048475;coated membrane;8.43515044906982e-08!GO:0030117;membrane coat;8.43515044906982e-08!GO:0000151;ubiquitin ligase complex;1.21097644448388e-07!GO:0051726;regulation of cell cycle;1.54419213419062e-07!GO:0006261;DNA-dependent DNA replication;1.6877568037658e-07!GO:0000074;regulation of progression through cell cycle;1.74091943363183e-07!GO:0005793;ER-Golgi intermediate compartment;1.76551423011798e-07!GO:0003724;RNA helicase activity;1.96317748243372e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.36159131443095e-07!GO:0030120;vesicle coat;2.94857815887654e-07!GO:0030662;coated vesicle membrane;2.94857815887654e-07!GO:0009060;aerobic respiration;3.13595696132082e-07!GO:0051246;regulation of protein metabolic process;3.19435312282746e-07!GO:0005770;late endosome;3.30264305277146e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.86243981058519e-07!GO:0016787;hydrolase activity;4.99108499113915e-07!GO:0044431;Golgi apparatus part;5.38604152425874e-07!GO:0022403;cell cycle phase;5.50312562388974e-07!GO:0000314;organellar small ribosomal subunit;5.58720456170161e-07!GO:0005763;mitochondrial small ribosomal subunit;5.58720456170161e-07!GO:0006752;group transfer coenzyme metabolic process;5.75231602422803e-07!GO:0065004;protein-DNA complex assembly;6.15228036647285e-07!GO:0000245;spliceosome assembly;6.99775217091896e-07!GO:0044452;nucleolar part;8.25581033323989e-07!GO:0045333;cellular respiration;8.65890082186224e-07!GO:0016740;transferase activity;1.06179617271118e-06!GO:0000087;M phase of mitotic cell cycle;1.20103573439557e-06!GO:0009117;nucleotide metabolic process;1.49493625463979e-06!GO:0005762;mitochondrial large ribosomal subunit;1.50247375354812e-06!GO:0000315;organellar large ribosomal subunit;1.50247375354812e-06!GO:0004298;threonine endopeptidase activity;1.67119929457843e-06!GO:0008654;phospholipid biosynthetic process;1.8773811087494e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.08988560930421e-06!GO:0043623;cellular protein complex assembly;2.11145207847848e-06!GO:0007067;mitosis;2.37666296718573e-06!GO:0051301;cell division;3.59679597989977e-06!GO:0045259;proton-transporting ATP synthase complex;3.64829637232364e-06!GO:0000785;chromatin;4.18559773735899e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.94884826234524e-06!GO:0051170;nuclear import;5.05091532352841e-06!GO:0003713;transcription coactivator activity;5.05091532352841e-06!GO:0006613;cotranslational protein targeting to membrane;5.2135753985675e-06!GO:0008186;RNA-dependent ATPase activity;5.38448966938181e-06!GO:0016564;transcription repressor activity;5.49294440961016e-06!GO:0006350;transcription;5.63445083026887e-06!GO:0051168;nuclear export;6.15132446755424e-06!GO:0031323;regulation of cellular metabolic process;6.40737048870056e-06!GO:0016563;transcription activator activity;8.89123466585022e-06!GO:0005798;Golgi-associated vesicle;9.38367428001366e-06!GO:0006333;chromatin assembly or disassembly;1.01750132892717e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.15781130249299e-05!GO:0003924;GTPase activity;1.29137688204932e-05!GO:0006606;protein import into nucleus;1.37640044952972e-05!GO:0005657;replication fork;1.37640044952972e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.39959521792155e-05!GO:0051427;hormone receptor binding;1.45274400866623e-05!GO:0031324;negative regulation of cellular metabolic process;1.62047551153488e-05!GO:0004004;ATP-dependent RNA helicase activity;1.81087388141145e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.84198801331289e-05!GO:0042981;regulation of apoptosis;2.00992275653057e-05!GO:0043067;regulation of programmed cell death;2.22128594704871e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.43267542390061e-05!GO:0000279;M phase;2.58535847861806e-05!GO:0031988;membrane-bound vesicle;2.86101988342481e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.9059143703175e-05!GO:0005525;GTP binding;2.93115515068195e-05!GO:0006084;acetyl-CoA metabolic process;2.97606328736756e-05!GO:0006099;tricarboxylic acid cycle;3.10226559866481e-05!GO:0046356;acetyl-CoA catabolic process;3.10226559866481e-05!GO:0035257;nuclear hormone receptor binding;3.10226559866481e-05!GO:0006352;transcription initiation;3.70432918303495e-05!GO:0006626;protein targeting to mitochondrion;4.09578541831886e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.32028977604597e-05!GO:0016491;oxidoreductase activity;4.70296631954342e-05!GO:0006402;mRNA catabolic process;4.72057181323441e-05!GO:0050789;regulation of biological process;4.72920663881386e-05!GO:0048523;negative regulation of cellular process;4.81064945278937e-05!GO:0000139;Golgi membrane;4.98054158816316e-05!GO:0006612;protein targeting to membrane;5.05968033618113e-05!GO:0005769;early endosome;5.1453049007099e-05!GO:0043021;ribonucleoprotein binding;5.5169943142143e-05!GO:0006414;translational elongation;6.08470389250095e-05!GO:0003690;double-stranded DNA binding;6.38421710884498e-05!GO:0051187;cofactor catabolic process;6.52621898645165e-05!GO:0003714;transcription corepressor activity;6.60781310371987e-05!GO:0043681;protein import into mitochondrion;6.61205473078949e-05!GO:0009892;negative regulation of metabolic process;7.24043640166916e-05!GO:0015630;microtubule cytoskeleton;8.13593137018493e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.29863347883518e-05!GO:0046489;phosphoinositide biosynthetic process;8.46860865842681e-05!GO:0048471;perinuclear region of cytoplasm;8.98453017750952e-05!GO:0043069;negative regulation of programmed cell death;9.26464054491243e-05!GO:0006383;transcription from RNA polymerase III promoter;0.00010001080992776!GO:0019899;enzyme binding;0.000102278498130958!GO:0046474;glycerophospholipid biosynthetic process;0.000109689132804928!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000112998636816858!GO:0010468;regulation of gene expression;0.000113056098644174!GO:0003729;mRNA binding;0.000139864752320038!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000141449068819089!GO:0005813;centrosome;0.000154413978685034!GO:0043066;negative regulation of apoptosis;0.000177210667635387!GO:0046483;heterocycle metabolic process;0.000183796518919857!GO:0016251;general RNA polymerase II transcription factor activity;0.000191307595904564!GO:0006091;generation of precursor metabolites and energy;0.000197817129555474!GO:0016197;endosome transport;0.000197831680052452!GO:0032561;guanyl ribonucleotide binding;0.00020426929851678!GO:0019001;guanyl nucleotide binding;0.00020426929851678!GO:0000049;tRNA binding;0.000211631853225073!GO:0005773;vacuole;0.000213769220616516!GO:0006891;intra-Golgi vesicle-mediated transport;0.000215973087068091!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000229597261155042!GO:0006793;phosphorus metabolic process;0.000230462164194026!GO:0006796;phosphate metabolic process;0.000230462164194026!GO:0031982;vesicle;0.000233828180493494!GO:0009109;coenzyme catabolic process;0.000236261733982689!GO:0030880;RNA polymerase complex;0.000244974703946934!GO:0005788;endoplasmic reticulum lumen;0.000262092579989725!GO:0006401;RNA catabolic process;0.000262381508213533!GO:0005815;microtubule organizing center;0.000296388760036638!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000297591190732268!GO:0030867;rough endoplasmic reticulum membrane;0.000308583231287951!GO:0031902;late endosome membrane;0.000313743520354038!GO:0050662;coenzyme binding;0.000328214983410545!GO:0045454;cell redox homeostasis;0.000329315881642262!GO:0032774;RNA biosynthetic process;0.000348116420460045!GO:0016363;nuclear matrix;0.000358504200815358!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000372617239574184!GO:0006302;double-strand break repair;0.000388907290177798!GO:0031410;cytoplasmic vesicle;0.000398999506486649!GO:0006351;transcription, DNA-dependent;0.000417624449393228!GO:0006916;anti-apoptosis;0.000445256366828426!GO:0007264;small GTPase mediated signal transduction;0.000449956348882955!GO:0042802;identical protein binding;0.00045971101297614!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000461178976911676!GO:0015399;primary active transmembrane transporter activity;0.000461178976911676!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000488695523471058!GO:0000428;DNA-directed RNA polymerase complex;0.000488695523471058!GO:0016481;negative regulation of transcription;0.000498674536007607!GO:0005048;signal sequence binding;0.000504589468079729!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00051397910304248!GO:0016853;isomerase activity;0.000539469976167254!GO:0016741;transferase activity, transferring one-carbon groups;0.000576883671962481!GO:0009165;nucleotide biosynthetic process;0.000624750808037136!GO:0045045;secretory pathway;0.000640575794442433!GO:0008250;oligosaccharyl transferase complex;0.000651162215354545!GO:0046467;membrane lipid biosynthetic process;0.000665241649958802!GO:0006506;GPI anchor biosynthetic process;0.000710703904036366!GO:0008168;methyltransferase activity;0.000711256098325004!GO:0033116;ER-Golgi intermediate compartment membrane;0.00074840932313493!GO:0048519;negative regulation of biological process;0.000799699355458289!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000841698512258589!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000841812878783157!GO:0006839;mitochondrial transport;0.000841812878783157!GO:0030663;COPI coated vesicle membrane;0.000844518179491854!GO:0030126;COPI vesicle coat;0.000844518179491854!GO:0000059;protein import into nucleus, docking;0.000855687436689671!GO:0016310;phosphorylation;0.000869514602329612!GO:0006497;protein amino acid lipidation;0.0008850536541121!GO:0015992;proton transport;0.000887907718923771!GO:0032508;DNA duplex unwinding;0.000901761028252428!GO:0032392;DNA geometric change;0.000901761028252428!GO:0031072;heat shock protein binding;0.000971679303740153!GO:0004576;oligosaccharyl transferase activity;0.000983531312910564!GO:0019867;outer membrane;0.000983531312910564!GO:0051252;regulation of RNA metabolic process;0.00100666080180528!GO:0006818;hydrogen transport;0.001013672895769!GO:0051920;peroxiredoxin activity;0.00104082366088555!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00104082366088555!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00104082366088555!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00104082366088555!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00106668928327493!GO:0009116;nucleoside metabolic process;0.00107760164797723!GO:0003746;translation elongation factor activity;0.00108007937707371!GO:0006611;protein export from nucleus;0.00110254020263667!GO:0031968;organelle outer membrane;0.00113114580842072!GO:0006405;RNA export from nucleus;0.00114562994735226!GO:0045786;negative regulation of progression through cell cycle;0.00120187965186396!GO:0005684;U2-dependent spliceosome;0.00120399272715822!GO:0048500;signal recognition particle;0.00121145147642067!GO:0006505;GPI anchor metabolic process;0.00121201727988315!GO:0003711;transcription elongation regulator activity;0.00121670306275151!GO:0000323;lytic vacuole;0.00122500084080851!GO:0005764;lysosome;0.00122500084080851!GO:0051052;regulation of DNA metabolic process;0.00123256483047138!GO:0030118;clathrin coat;0.00129344549357261!GO:0007243;protein kinase cascade;0.00131134120990684!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00139294288455131!GO:0009112;nucleobase metabolic process;0.00139432211259772!GO:0008180;signalosome;0.00142570195828001!GO:0016859;cis-trans isomerase activity;0.00144226565493154!GO:0008094;DNA-dependent ATPase activity;0.00148292666685518!GO:0007006;mitochondrial membrane organization and biogenesis;0.0014934432478799!GO:0003678;DNA helicase activity;0.00164986074864744!GO:0008312;7S RNA binding;0.00172662865632269!GO:0065009;regulation of a molecular function;0.00178325280066156!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00186108235698784!GO:0003684;damaged DNA binding;0.00186108235698784!GO:0009451;RNA modification;0.0018630714011652!GO:0030137;COPI-coated vesicle;0.00198452872760878!GO:0015980;energy derivation by oxidation of organic compounds;0.00207576342065908!GO:0030133;transport vesicle;0.00212587332687077!GO:0051329;interphase of mitotic cell cycle;0.00213309869052928!GO:0006650;glycerophospholipid metabolic process;0.00215251141318843!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00234753910783018!GO:0045047;protein targeting to ER;0.00234753910783018!GO:0042158;lipoprotein biosynthetic process;0.00244001551828758!GO:0051540;metal cluster binding;0.00260906992131486!GO:0051536;iron-sulfur cluster binding;0.00260906992131486!GO:0006268;DNA unwinding during replication;0.00264154389379436!GO:0051325;interphase;0.0027492345033487!GO:0005669;transcription factor TFIID complex;0.00278806310048889!GO:0005741;mitochondrial outer membrane;0.00281761326906656!GO:0045449;regulation of transcription;0.0028425256538662!GO:0051539;4 iron, 4 sulfur cluster binding;0.00292573092509653!GO:0031252;leading edge;0.00294062543917939!GO:0005885;Arp2/3 protein complex;0.00300237313726278!GO:0031497;chromatin assembly;0.00301988270262187!GO:0043596;nuclear replication fork;0.00308406042168874!GO:0004527;exonuclease activity;0.00323376640966254!GO:0030119;AP-type membrane coat adaptor complex;0.003345163825444!GO:0019843;rRNA binding;0.00340292244155518!GO:0030384;phosphoinositide metabolic process;0.00342805502117932!GO:0051789;response to protein stimulus;0.00346063309240277!GO:0006986;response to unfolded protein;0.00346063309240277!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00353429354769346!GO:0003702;RNA polymerase II transcription factor activity;0.00363784921099466!GO:0015631;tubulin binding;0.00379041334919977!GO:0006334;nucleosome assembly;0.00382145804345079!GO:0043492;ATPase activity, coupled to movement of substances;0.00383335072106981!GO:0006400;tRNA modification;0.00394460575915693!GO:0018196;peptidyl-asparagine modification;0.00410452819012357!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00410452819012357!GO:0030131;clathrin adaptor complex;0.00414695112706462!GO:0016272;prefoldin complex;0.00418089440726695!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00432555070749821!GO:0048487;beta-tubulin binding;0.00440521968230292!GO:0000096;sulfur amino acid metabolic process;0.00444328253726816!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00444658565938699!GO:0015002;heme-copper terminal oxidase activity;0.00444658565938699!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00444658565938699!GO:0004129;cytochrome-c oxidase activity;0.00444658565938699!GO:0022890;inorganic cation transmembrane transporter activity;0.00446534017316576!GO:0030176;integral to endoplasmic reticulum membrane;0.00455888092244298!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0046811839793575!GO:0048037;cofactor binding;0.0047061521428402!GO:0032984;macromolecular complex disassembly;0.00478700092003735!GO:0030036;actin cytoskeleton organization and biogenesis;0.0047891120956491!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048317770362618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048317770362618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00485547448102209!GO:0004518;nuclease activity;0.00489076495346094!GO:0005758;mitochondrial intermembrane space;0.00490899025812463!GO:0008234;cysteine-type peptidase activity;0.00516002787713436!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00520734581157364!GO:0035258;steroid hormone receptor binding;0.00526322537368751!GO:0043624;cellular protein complex disassembly;0.00536914411617697!GO:0019752;carboxylic acid metabolic process;0.00536914411617697!GO:0043022;ribosome binding;0.00544006107974299!GO:0031124;mRNA 3'-end processing;0.00563136340171181!GO:0006338;chromatin remodeling;0.00564818253229388!GO:0030658;transport vesicle membrane;0.00577361538075997!GO:0048146;positive regulation of fibroblast proliferation;0.00610145057422524!GO:0006082;organic acid metabolic process;0.00610145057422524!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00613732005605626!GO:0046966;thyroid hormone receptor binding;0.00614091277616322!GO:0022406;membrane docking;0.00625822038852084!GO:0048278;vesicle docking;0.00625822038852084!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00639231943224122!GO:0005774;vacuolar membrane;0.00650779968750968!GO:0048144;fibroblast proliferation;0.00650792089741821!GO:0048145;regulation of fibroblast proliferation;0.00650792089741821!GO:0003682;chromatin binding;0.00660298617811439!GO:0044438;microbody part;0.00704881246587179!GO:0044439;peroxisomal part;0.00704881246587179!GO:0006904;vesicle docking during exocytosis;0.00717064869491255!GO:0005791;rough endoplasmic reticulum;0.00723058086905143!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00758276512158192!GO:0043189;H4/H2A histone acetyltransferase complex;0.00780482940982655!GO:0008139;nuclear localization sequence binding;0.00784763975044906!GO:0043488;regulation of mRNA stability;0.00802156033281384!GO:0043487;regulation of RNA stability;0.00802156033281384!GO:0005732;small nucleolar ribonucleoprotein complex;0.00825090728750047!GO:0006275;regulation of DNA replication;0.00836297689460953!GO:0005869;dynactin complex;0.00837337818918332!GO:0051287;NAD binding;0.00843893790839748!GO:0043241;protein complex disassembly;0.00849572128602439!GO:0006354;RNA elongation;0.00857556974300626!GO:0046983;protein dimerization activity;0.00878675327606097!GO:0030521;androgen receptor signaling pathway;0.00890388178206602!GO:0046128;purine ribonucleoside metabolic process;0.00906483697917066!GO:0042278;purine nucleoside metabolic process;0.00906483697917066!GO:0031970;organelle envelope lumen;0.00909939819819455!GO:0000178;exosome (RNase complex);0.00917823687569393!GO:0006310;DNA recombination;0.00921583387338302!GO:0007010;cytoskeleton organization and biogenesis;0.00965459339504641!GO:0016044;membrane organization and biogenesis;0.00971941187183173!GO:0007004;telomere maintenance via telomerase;0.00973560000899725!GO:0005637;nuclear inner membrane;0.00974436439789007!GO:0000123;histone acetyltransferase complex;0.0100596693008422!GO:0035267;NuA4 histone acetyltransferase complex;0.0103734399987729!GO:0031529;ruffle organization and biogenesis;0.0105092199606507!GO:0006376;mRNA splice site selection;0.0110646346989242!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0110646346989242!GO:0030659;cytoplasmic vesicle membrane;0.0110865855881607!GO:0043284;biopolymer biosynthetic process;0.0111926977072552!GO:0031903;microbody membrane;0.0114077334708904!GO:0005778;peroxisomal membrane;0.0114077334708904!GO:0000075;cell cycle checkpoint;0.0114153974621864!GO:0045893;positive regulation of transcription, DNA-dependent;0.0114547205494085!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0114674620192459!GO:0006378;mRNA polyadenylation;0.0115186733748815!GO:0032200;telomere organization and biogenesis;0.0118178968175896!GO:0000723;telomere maintenance;0.0118178968175896!GO:0042770;DNA damage response, signal transduction;0.0118232069999376!GO:0008022;protein C-terminus binding;0.0118797694399629!GO:0051087;chaperone binding;0.011914869847879!GO:0006595;polyamine metabolic process;0.0119188870811994!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0120134811601224!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0121568479471291!GO:0044433;cytoplasmic vesicle part;0.0121837090492846!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0121945343792638!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0124013119022674!GO:0046112;nucleobase biosynthetic process;0.0124683059097559!GO:0042393;histone binding;0.0126019357032709!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0126094470359998!GO:0006289;nucleotide-excision repair;0.013239946676514!GO:0000209;protein polyubiquitination;0.0132716302429231!GO:0030132;clathrin coat of coated pit;0.0133554087135832!GO:0006360;transcription from RNA polymerase I promoter;0.0135044977976351!GO:0006284;base-excision repair;0.0135290345365238!GO:0033673;negative regulation of kinase activity;0.0135299330692313!GO:0006469;negative regulation of protein kinase activity;0.0135299330692313!GO:0012506;vesicle membrane;0.0135385505019099!GO:0006144;purine base metabolic process;0.0135385505019099!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0135725123705718!GO:0005832;chaperonin-containing T-complex;0.0135725123705718!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0137485696345731!GO:0010257;NADH dehydrogenase complex assembly;0.0137485696345731!GO:0033108;mitochondrial respiratory chain complex assembly;0.0137485696345731!GO:0030660;Golgi-associated vesicle membrane;0.0138985327766178!GO:0040029;regulation of gene expression, epigenetic;0.0139557668851085!GO:0004674;protein serine/threonine kinase activity;0.013987725852699!GO:0005819;spindle;0.0141885442190239!GO:0044437;vacuolar part;0.0144582294078532!GO:0030134;ER to Golgi transport vesicle;0.014649078828181!GO:0000118;histone deacetylase complex;0.0148157175339891!GO:0006520;amino acid metabolic process;0.0149618610213793!GO:0006355;regulation of transcription, DNA-dependent;0.0149732600927558!GO:0030125;clathrin vesicle coat;0.0150617623608108!GO:0030665;clathrin coated vesicle membrane;0.0150617623608108!GO:0022411;cellular component disassembly;0.0153403400160559!GO:0000228;nuclear chromosome;0.0155705643846973!GO:0006892;post-Golgi vesicle-mediated transport;0.0156810506901464!GO:0004532;exoribonuclease activity;0.0159089533118448!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0159089533118448!GO:0007030;Golgi organization and biogenesis;0.0163214530331656!GO:0031901;early endosome membrane;0.0164403546584529!GO:0000152;nuclear ubiquitin ligase complex;0.0166179965257246!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0166945323998534!GO:0043601;nuclear replisome;0.0172368651872044!GO:0030894;replisome;0.0172368651872044!GO:0019783;small conjugating protein-specific protease activity;0.0172775275625569!GO:0008632;apoptotic program;0.017394691153782!GO:0005905;coated pit;0.0174886774112081!GO:0000775;chromosome, pericentric region;0.0178039185814293!GO:0051348;negative regulation of transferase activity;0.0178310147838652!GO:0004722;protein serine/threonine phosphatase activity;0.0180626258253913!GO:0048522;positive regulation of cellular process;0.0189777938831245!GO:0009119;ribonucleoside metabolic process;0.0189889949200275!GO:0006417;regulation of translation;0.0192053583938608!GO:0006270;DNA replication initiation;0.0193104369044444!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0193511561711499!GO:0008408;3'-5' exonuclease activity;0.0193511561711499!GO:0003725;double-stranded RNA binding;0.0193995328255096!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.019943325892971!GO:0045039;protein import into mitochondrial inner membrane;0.019943325892971!GO:0031625;ubiquitin protein ligase binding;0.0202345632322592!GO:0031123;RNA 3'-end processing;0.0203721303541578!GO:0007034;vacuolar transport;0.0208701793933489!GO:0007033;vacuole organization and biogenesis;0.0209607570469231!GO:0006740;NADPH regeneration;0.021021970172043!GO:0006098;pentose-phosphate shunt;0.021021970172043!GO:0051101;regulation of DNA binding;0.021021970172043!GO:0008538;proteasome activator activity;0.0213295622421395!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0218151680258271!GO:0065007;biological regulation;0.021872296965222!GO:0045941;positive regulation of transcription;0.0221498414966722!GO:0009303;rRNA transcription;0.0221498414966722!GO:0030503;regulation of cell redox homeostasis;0.0225364744629764!GO:0030029;actin filament-based process;0.0225577270430854!GO:0004843;ubiquitin-specific protease activity;0.022560849387505!GO:0046914;transition metal ion binding;0.0227222364999229!GO:0008629;induction of apoptosis by intracellular signals;0.0227962065338631!GO:0000339;RNA cap binding;0.0229132271853868!GO:0045892;negative regulation of transcription, DNA-dependent;0.0230498458264707!GO:0008270;zinc ion binding;0.0234344194833935!GO:0042147;retrograde transport, endosome to Golgi;0.0240104865315847!GO:0006672;ceramide metabolic process;0.0242240264613418!GO:0046822;regulation of nucleocytoplasmic transport;0.0242240264613418!GO:0000792;heterochromatin;0.0248134387578981!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0248134387578981!GO:0008017;microtubule binding;0.0248134387578981!GO:0001726;ruffle;0.0248806398930861!GO:0031371;ubiquitin conjugating enzyme complex;0.0251750353110587!GO:0000781;chromosome, telomeric region;0.0251750353110587!GO:0008361;regulation of cell size;0.0251861104155195!GO:0008092;cytoskeletal protein binding;0.0251861104155195!GO:0030515;snoRNA binding;0.0252941240893412!GO:0006367;transcription initiation from RNA polymerase II promoter;0.025575620606857!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.025581829515744!GO:0044454;nuclear chromosome part;0.0257687143315485!GO:0050790;regulation of catalytic activity;0.0264045938667143!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0266372540580381!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0268843602607464!GO:0006778;porphyrin metabolic process;0.0272351861815147!GO:0033013;tetrapyrrole metabolic process;0.0272351861815147!GO:0005765;lysosomal membrane;0.0273565865415309!GO:0008097;5S rRNA binding;0.0279567924645437!GO:0004526;ribonuclease P activity;0.0282223686201384!GO:0006984;ER-nuclear signaling pathway;0.0282916645970375!GO:0030518;steroid hormone receptor signaling pathway;0.0291247955905333!GO:0030127;COPII vesicle coat;0.0297703092309262!GO:0012507;ER to Golgi transport vesicle membrane;0.0297703092309262!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0298007542107695!GO:0004680;casein kinase activity;0.0307699729242799!GO:0043414;biopolymer methylation;0.0307699729242799!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0307699729242799!GO:0005784;translocon complex;0.0307952615509767!GO:0050811;GABA receptor binding;0.0308516358232709!GO:0051059;NF-kappaB binding;0.0309882783659642!GO:0006643;membrane lipid metabolic process;0.0310498566436242!GO:0008287;protein serine/threonine phosphatase complex;0.031307502239162!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.031498747171399!GO:0051338;regulation of transferase activity;0.0317763215526293!GO:0035035;histone acetyltransferase binding;0.0318285587122045!GO:0006390;transcription from mitochondrial promoter;0.032275199538723!GO:0007265;Ras protein signal transduction;0.033411831309527!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0338346537589028!GO:0000726;non-recombinational repair;0.0343724800101354!GO:0007040;lysosome organization and biogenesis;0.034623437881983!GO:0000030;mannosyltransferase activity;0.0352844408121415!GO:0046519;sphingoid metabolic process;0.0354101114200129!GO:0000776;kinetochore;0.0356535213193156!GO:0045767;regulation of anti-apoptosis;0.0357699434279149!GO:0048012;hepatocyte growth factor receptor signaling pathway;0.0364325581447404!GO:0005008;hepatocyte growth factor receptor activity;0.0364325581447404!GO:0051450;myoblast proliferation;0.0364325581447404!GO:0030508;thiol-disulfide exchange intermediate activity;0.0366464701737894!GO:0008637;apoptotic mitochondrial changes;0.0368282096862857!GO:0004221;ubiquitin thiolesterase activity;0.0371053064647087!GO:0016407;acetyltransferase activity;0.0372927324087717!GO:0051128;regulation of cellular component organization and biogenesis;0.0374676112402856!GO:0032940;secretion by cell;0.037817006169025!GO:0030911;TPR domain binding;0.0379248979321444!GO:0006118;electron transport;0.0384194436608986!GO:0009967;positive regulation of signal transduction;0.0385913890387668!GO:0008426;protein kinase C inhibitor activity;0.0389376909458057!GO:0001522;pseudouridine synthesis;0.0390755586232772!GO:0003677;DNA binding;0.0392359284331437!GO:0001558;regulation of cell growth;0.0393524668734155!GO:0016791;phosphoric monoester hydrolase activity;0.0393524668734155!GO:0032507;maintenance of cellular protein localization;0.0398198917294993!GO:0008610;lipid biosynthetic process;0.0398922584025512!GO:0004177;aminopeptidase activity;0.0405078093703966!GO:0022415;viral reproductive process;0.0408417980695226!GO:0032259;methylation;0.0412322441779928!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0418843022570545!GO:0051098;regulation of binding;0.0427309149297842!GO:0009299;mRNA transcription;0.0432831177135876!GO:0004549;tRNA-specific ribonuclease activity;0.0433046992019796!GO:0030140;trans-Golgi network transport vesicle;0.0436424796369834!GO:0005777;peroxisome;0.0437495611016558!GO:0042579;microbody;0.0437495611016558!GO:0005874;microtubule;0.0440551377633507!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0451472205882709!GO:0006220;pyrimidine nucleotide metabolic process;0.0452739980303055!GO:0016049;cell growth;0.045346995681045!GO:0051015;actin filament binding;0.0454266927617052!GO:0016584;nucleosome positioning;0.0457455944157454!GO:0006607;NLS-bearing substrate import into nucleus;0.0461822311358395!GO:0043549;regulation of kinase activity;0.0462045821791734!GO:0007051;spindle organization and biogenesis;0.0464130382046023!GO:0006278;RNA-dependent DNA replication;0.0470900249452603!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0472101956150822!GO:0006644;phospholipid metabolic process;0.0474124520120422!GO:0050681;androgen receptor binding;0.0481308677553931!GO:0017134;fibroblast growth factor binding;0.0481532719963737!GO:0006749;glutathione metabolic process;0.048347869348701!GO:0004423;iduronate-2-sulfatase activity;0.0496962967476411
|sample_id=10486
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=ELK1,4_GABP{A,B1}:2.40287911666;bHLH_family:1.93744048766;SNAI1..3:1.78488528102;ZEB1:1.65167713154;CRX:1.43491339352;ARID5B:1.41507089406;FOX{I1,J2}:1.39782672364;FOXQ1:1.39126680145;FOXN1:1.37817321783;MYOD1:1.29651393549;PPARG:1.23906263098;AHR_ARNT_ARNT2:1.14670345638;NRF1:1.12388735175;NKX6-1,2:1.12050913446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05470132832;FOXD3:0.959529809605;ZBTB16:0.949405931637;PITX1..3:0.894788508273;HIF1A:0.888999135481;CDC5L:0.844029830858;FOXA2:0.826833658386;TEF:0.791693223667;ONECUT1,2:0.776755860688;ADNP_IRX_SIX_ZHX:0.71934898024;SREBF1,2:0.718833343884;ELF1,2,4:0.692528625664;NFE2L2:0.682674363492;YY1:0.66815015367;RFX2..5_RFXANK_RFXAP:0.661821958496;FOXM1:0.631503188704;RFX1:0.615824070398;POU1F1:0.614665083288;T:0.602659996485;NFE2:0.584014552702;FOXP1:0.567542029433;HOXA9_MEIS1:0.553329672471;FOS_FOS{B,L1}_JUN{B,D}:0.488333210687;VSX1,2:0.479054153106;NFY{A,B,C}:0.472817691946;BACH2:0.472391615949;ZNF143:0.449861740209;DBP:0.378197699903;FOSL2:0.361484413544;TOPORS:0.359010856587;FOXP3:0.358345982732;CDX1,2,4:0.353493204388;LHX3,4:0.344606107903;RORA:0.339738518262;HAND1,2:0.336919816881;ATF5_CREB3:0.334828475407;E2F1..5:0.298800342858;TBX4,5:0.29655627572;PDX1:0.296240117962;TFDP1:0.288511488304;ATF4:0.28084087843;TEAD1:0.280628546189;LMO2:0.276831189595;TLX2:0.248554581984;CREB1:0.227154324793;IKZF2:0.224268834694;IKZF1:0.203880511446;OCT4_SOX2{dimer}:0.180049322715;HMGA1,2:0.173754653282;NFIL3:0.161333808256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.146258190033;HSF1,2:0.138383234104;EN1,2:0.135750295448;NR6A1:0.126332629884;EVI1:0.121877255889;POU6F1:0.093745684416;PAX2:0.0813545094923;ATF2:0.0730932196986;SOX2:0.0632436712158;HOX{A4,D4}:0.055714445126;NFIX:0.0317444517799;HBP1_HMGB_SSRP1_UBTF:0.0292596978672;HNF1A:0.0209183655707;NANOG:0.0172106238928;XBP1:0.0124116991552;FOX{D1,D2}:0.00959223592182;FOX{F1,F2,J1}:0.00700453621171;ATF6:-0.00879130257769;FOXL1:-0.0179320619564;ALX1:-0.0258073940013;JUN:-0.0359135798467;ESR1:-0.0406781009088;ESRRA:-0.0461393782856;PAX8:-0.0481372417654;HLF:-0.0596357336754;RXRA_VDR{dimer}:-0.0635112644592;NKX3-1:-0.0741462850818;CEBPA,B_DDIT3:-0.0745560800492;NFKB1_REL_RELA:-0.0751294074682;IRF1,2:-0.0781156041732;NKX2-2,8:-0.0861457746638;MYB:-0.089599036365;CUX2:-0.0914419213715;LEF1_TCF7_TCF7L1,2:-0.0916942634375;NKX2-1,4:-0.100463624631;HOX{A6,A7,B6,B7}:-0.102413025477;PBX1:-0.118357608049;IRF7:-0.120114805459;TP53:-0.134740999596;BPTF:-0.141007405648;SOX{8,9,10}:-0.14154684747;MED-1{core}:-0.143230042779;RBPJ:-0.149301271848;FOXO1,3,4:-0.157317813588;GATA6:-0.158203149994;NR5A1,2:-0.162706593832;GLI1..3:-0.179824399915;SOX17:-0.189178861766;AIRE:-0.210793914178;DMAP1_NCOR{1,2}_SMARC:-0.210817127875;HNF4A_NR2F1,2:-0.215376999772;SOX5:-0.223296284119;NR1H4:-0.233612818361;NKX3-2:-0.267632029153;AR:-0.279948306687;TAL1_TCF{3,4,12}:-0.290538103805;ZBTB6:-0.297204435691;GFI1:-0.303312692931;ETS1,2:-0.332094554327;MYBL2:-0.334657920239;KLF4:-0.341138990585;REST:-0.342462059903;NKX2-3_NKX2-5:-0.360722589067;BREu{core}:-0.363147476122;ZFP161:-0.368939733846;STAT5{A,B}:-0.374930669083;PRRX1,2:-0.37915881117;SPI1:-0.395130758598;RUNX1..3:-0.409212496049;PAX6:-0.425948925495;SPIB:-0.444888682474;STAT2,4,6:-0.451325687863;PAX5:-0.457087525497;MTE{core}:-0.461788027059;HOX{A5,B5}:-0.463335840812;UFEwm:-0.490550233223;MEF2{A,B,C,D}:-0.491987831484;TLX1..3_NFIC{dimer}:-0.494140119074;EP300:-0.519371051075;ALX4:-0.544967820336;STAT1,3:-0.561586775433;RXR{A,B,G}:-0.571017774926;NHLH1,2:-0.586627272754;ZNF384:-0.591253231041;TFCP2:-0.602595519555;PAX4:-0.60642005977;TFAP2{A,C}:-0.62106905885;PRDM1:-0.632613019305;NFATC1..3:-0.634038948678;ZIC1..3:-0.635160460186;GZF1:-0.636879426721;ZNF238:-0.647573727541;NR3C1:-0.652549457872;EBF1:-0.667631186805;ZNF423:-0.685222823791;GATA4:-0.687560806851;PAX1,9:-0.720599182958;HES1:-0.731529296433;SRF:-0.731963259443;POU2F1..3:-0.766146880135;HIC1:-0.777900484362;HMX1:-0.778537108024;GFI1B:-0.812612380855;GTF2A1,2:-0.812835315726;MTF1:-0.842867832694;ZNF148:-0.846441284134;GTF2I:-0.8498497831;TFAP2B:-0.868029910152;NFE2L1:-0.868836333353;POU3F1..4:-0.90609608512;MYFfamily:-0.943569138717;SP1:-0.996266028086;SPZ1:-1.00357495588;XCPE1{core}:-1.00689312383;MAFB:-1.0176752041;GCM1,2:-1.02587108704;TBP:-1.04045267671;TGIF1:-1.0574574822;PAX3,7:-1.06786182805;POU5F1:-1.11439196279;PATZ1:-1.11529022147;RREB1:-1.14296682957;MAZ:-1.15880684216;SMAD1..7,9:-1.23443752899;EGR1..3:-1.25239768049;MZF1:-1.533244892;NANOG{mouse}:-1.56411535569;TFAP4:-1.60160222188
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10486-107A9;search_select_hide=table117:FF:10486-107A9
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:squamous cell lung carcinoma cell line:EBC-1
Species:Human (Homo sapiens)
Library ID:CNhs11273
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age69
cell typeunclassifiable
cell lineEBC-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004799
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11273 CAGE DRX008017 DRR008889
Accession ID Hg19

Library idBAMCTSS
CNhs11273 DRZ000314 DRZ001699
Accession ID Hg38

Library idBAMCTSS
CNhs11273 DRZ011664 DRZ013049
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.024
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0951
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.00418
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.00232
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD192.107462e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0161
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.238
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.147
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.517
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0335
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.105
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11273

Jaspar motifP-value
MA0002.20.228
MA0003.10.109
MA0004.10.00861
MA0006.10.47
MA0007.10.284
MA0009.10.376
MA0014.10.0235
MA0017.10.387
MA0018.20.0589
MA0019.10.383
MA0024.10.279
MA0025.10.202
MA0027.10.632
MA0028.14.29364e-12
MA0029.10.969
MA0030.10.68
MA0031.10.653
MA0035.20.922
MA0038.10.152
MA0039.20.736
MA0040.10.445
MA0041.10.673
MA0042.10.858
MA0043.10.0296
MA0046.10.64
MA0047.20.119
MA0048.10.318
MA0050.10.289
MA0051.10.0394
MA0052.10.00601
MA0055.11.42746e-4
MA0057.10.684
MA0058.13.36652e-4
MA0059.10.0138
MA0060.10.546
MA0061.10.536
MA0062.25.1362e-15
MA0065.20.0531
MA0066.10.96
MA0067.10.557
MA0068.10.0529
MA0069.10.717
MA0070.10.171
MA0071.10.638
MA0072.10.338
MA0073.10.809
MA0074.10.814
MA0076.13.12865e-16
MA0077.10.804
MA0078.10.712
MA0079.20.0999
MA0080.20.00425
MA0081.10.617
MA0083.10.00152
MA0084.10.333
MA0087.10.999
MA0088.10.0425
MA0090.10.567
MA0091.10.0852
MA0092.10.671
MA0093.10.00373
MA0099.21.14219e-12
MA0100.10.446
MA0101.10.277
MA0102.20.291
MA0103.14.78557e-8
MA0104.29.6725e-4
MA0105.10.926
MA0106.10.281
MA0107.10.0688
MA0108.26.87685e-15
MA0111.10.505
MA0112.20.164
MA0113.10.505
MA0114.10.0144
MA0115.10.0625
MA0116.10.167
MA0117.10.906
MA0119.10.498
MA0122.10.853
MA0124.10.458
MA0125.10.434
MA0131.10.0754
MA0135.10.0491
MA0136.10.171
MA0137.20.118
MA0138.20.0908
MA0139.12.52766e-4
MA0140.10.438
MA0141.10.47
MA0142.10.948
MA0143.10.996
MA0144.10.508
MA0145.10.775
MA0146.10.819
MA0147.19.4274e-4
MA0148.10.00382
MA0149.10.0333
MA0150.11.5219e-5
MA0152.10.891
MA0153.10.106
MA0154.10.695
MA0155.10.0392
MA0156.12.80816e-4
MA0157.10.814
MA0159.10.00491
MA0160.10.143
MA0162.10.912
MA0163.10.00383
MA0164.10.173
MA0258.10.776
MA0259.10.0579



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11273

Novel motifP-value
10.0706
100.0476
1000.0438
1010.633
1020.826
1030.173
1040.347
1050.514
1060.063
1070.176
1080.703
1090.021
110.997
1100.247
1110.0779
1120.954
1130.109
1140.134
1150.023
1160.225
1170.0183
1180.51
1190.0975
120.792
1200.124
1210.944
1220.309
1230.0256
1240.47
1250.637
1260.641
1270.632
1280.0168
1290.436
130.0171
1300.566
1310.235
1320.236
1330.122
1340.182
1350.063
1360.208
1370.488
1380.912
1390.274
140.799
1400.489
1410.37
1420.301
1430.0162
1440.0285
1450.574
1460.41
1470.997
1480.0511
1490.947
150.106
1500.781
1510.733
1520.231
1530.856
1540.941
1550.862
1560.495
1570.948
1580.888
1590.216
160.788
1600.388
1610.674
1620.893
1630.787
1640.0761
1650.428
1660.299
1670.0242
1680.61
1690.46
170.955
180.724
190.638
20.412
200.0624
210.342
220.575
230.148
240.0879
250.448
260.839
270.612
280.305
290.0402
30.407
300.535
310.365
320.0131
330.0739
340.102
350.498
360.0242
370.527
380.533
390.457
40.917
400.0215
410.491
420.219
430.71
440.52
450.635
460.895
470.313
480.535
490.984
50.66
500.705
510.908
520.146
530.747
540.717
550.866
560.928
570.351
580.983
590.404
60.545
600.578
610.302
620.705
630.343
640.937
650.397
660.119
670.905
680.0117
690.208
70.0738
700.0296
710.236
720.921
730.421
740.765
750.0116
760.0887
770.82
780.161
790.0546
80.665
800.573
810.477
820.523
830.538
840.684
850.327
860.462
870.0809
880.82
890.429
90.0919
900.176
910.885
920.588
930.836
940.901
950.201
960.788
970.723
980.501
990.066



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11273


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)
0103001 (EBC-1 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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