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(Created page with "{{f5samples |id=FF:11369-118A1 |name=Tracheal Epithelial Cells, donor2 |sample_id=11369 |rna_tube_id=118A1 |rna_box=118 |rna_position=A1 |sample_cell_lot=N/A |sample_c...")
 
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{{f5samples
{{f5samples
|id=FF:11369-118A1
|DRA_sample_Accession=CAGE@SAMD00004729
|name=Tracheal Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004729
|sample_id=11369
|accession_numbers=CAGE;DRX008523;DRR009395;DRZ000820;DRZ002205;DRZ012170;DRZ013555
|rna_tube_id=118A1
|accession_numbers_RNASeq=sRNA-Seq;DRX037089;DRR041455;DRZ007097
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_position=A1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1217.00000
|rna_catalog_number=CA504-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=45 years old adult
|sample_tissue=trachea
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=45
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=tracheal epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11993,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000068,CL:0000069,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000307,CL:0000377,CL:0000548,CL:0002076,CL:0002202,CL:0002321,CL:0002368,CL:0002371,CL:0002632
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001005,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003126,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000189
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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ZNF786!0.32!5.36!ZNF786;;chr19:56111639..56111668,+!p2@ZNF524!0.32!4.69!ZNF524;;chr7:19157043..19157088,-!p2@TWIST1!0.32!4.02!TWIST1;;chr8:48650982..48651023,-!p3@CEBPD!0.32!4.02!CEBPD;;chr10:77161133..77161176,-!p3@ZNF503!0.32!3.35!ZNF503;;chr1:45805693..45805718,+!p3@TOE1!0.32!3.35!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.32!2.68!MYCL1;;chr16:3185024..3185045,+!p2@ZNF213!0.32!2.68!ZNF213;;chr19:3366625..3366629,+!p4@NFIC!0.32!2.01!NFIC;;chr20:50159198..50159299,-!p1@NFATC2!0.32!2.01!NFATC2;;chr12:53848549..53848582,+!p9@PCBP2!0.32!2.01!PCBP2;;chr17:17726892..17726903,-!p6@SREBF1!0.32!1.34!SREBF1;;chr8:72756637..72756664,-!p3@MSC!0.32!1.34!MSC;;chr22:21355896..21355920,-!p4@THAP7!0.32!1.34!THAP7;;chr17:80477571..80477637,+!p1@FOXK2!0.31!56.31!FOXK2;;chr9:137218281..137218340,+!p1@RXRA!0.31!52.95!RXRA;;chr1:59249732..59249749,-!p2@JUN!0.31!22.12!JUN;;chr19:4066803..4066886,-!p1@ZBTB7A!0.31!19.44!ZBTB7A;;chr6:33168126..33168180,-!p2@RXRB!0.31!18.77!RXRB;;chr16:2273558..2273637,+!p1@E4F1!0.31!17.43!E4F1;;chr8:146176199..146176272,-!p1@ZNF16!0.31!8.04!ZNF16;;chr3:141087393..141087426,+!p3@ZBTB38!0.31!6.70!ZBTB38;;chrX:48900782..48900793,-!p3@TFE3!0.31!2.68!TFE3;;chr6:42419316..42419340,-!p4@TRERF1!0.31!2.01!TRERF1;;chr1:8926441..8926473,-!p10@ENO1!0.31!2.01!ENO1;;chr1:935496..935509,-!p3@HES4!0.31!2.01!HES4;;chr4:81104895..81104920,+!p2@PRDM8!0.31!2.01!PRDM8;;chr3:12330560..12330579,+!p1@PPARG!0.31!1.34!PPARG;;chr4:57522166..57522260,-!p2@HOPX!0.31!1.34!HOPX;;chr8:146024397..146024416,+!p2@ZNF517!0.31!1.34!ZNF517;;chr19:44124019..44124030,-!p2@ZNF428!0.31!1.34!ZNF428;;chr20:48807351..48807384,+!p1@CEBPB!0.30!185.00!CEBPB;;chr11:65430371..65430399,-!p1@RELA!0.30!129.37!RELA;;chr8:145159376..145159407,+!p1@MAF1!0.30!75.74!MAF1;;chr6:31126291..31126399,+!p1@TCF19!0.30!16.76!TCF19;;chr21:43299404..43299463,-!p1@PRDM15!0.30!7.37!PRDM15;;chr3:185826764..185826803,-!p2@ETV5!0.30!6.03!ETV5;;chr6:41040923..41040952,+!p2@NFYA!0.30!4.02!NFYA;;chr9:128509635..128509658,+!p2@PBX3!0.30!2.68!PBX3;;chr1:247095162..247095173,-!p3@AHCTF1!0.30!2.01!AHCTF1;;chr11:16759983..16760029,-!p2@SOX6!0.30!2.01!SOX6;;chr22:39916289..39916302,+!p3@ATF4!0.30!1.34!ATF4;;chr3:169381420..169381535,-!p1@MECOM!0.30!1.34!MECOM;;chr3:5022174..5022207,+!p8@BHLHE40!0.30!1.34!BHLHE40;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.30!1.34!ZNF551;;chr1:202777535..202777556,-!p1@KDM5B!0.29!58.32!KDM5B;;chr10:104155480..104155534,+!p2@NFKB2!0.29!10.72!NFKB2;;chr16:31085514..31085576,-!p1@ZNF668!0.29!6.70!ZNF668;;chr2:242576641..242576731,-!p2@THAP4!0.29!6.03!THAP4;;chr2:27357446..27357475,-!p2@PREB!0.29!5.36!PREB;;chr14:64971288..64971316,-!p2@ZBTB25!0.29!4.69!ZBTB25;;chr12:53614155..53614187,-!p3@RARG!0.29!2.68!RARG;;chr2:208030886..208030917,-!p4@KLF7!0.29!2.68!KLF7;;chr19:42788611..42788634,+!p2@CIC!0.29!2.01!CIC;;chr20:49547554..49547563,-!p6@ADNP!0.29!2.01!ADNP;;chr14:105886300..105886316,+!p2@MTA1!0.29!2.01!MTA1;;chr17:47492203..47492214,-!p3@PHB!0.29!2.01!PHB;;chr19:11071630..11071644,+!p4@SMARCA4!0.29!2.01!SMARCA4;;chr9:127533519..127533573,-!p2@NR6A1!0.29!1.34!NR6A1;;chr10:8096631..8096660,+!p1@GATA3!0.29!1.34!GATA3;;chr12:27485889..27485900,+!p4@ARNTL2!0.29!1.34!ARNTL2;;chr19:9785710..9785721,-!p3@ZNF562!0.29!1.34!ZNF562;;chr1:41204530..41204541,+!p8@NFYC!0.29!1.34!NFYC;;chr19:3366570..3366619,+!p1@NFIC!0.28!54.29!NFIC;;chr12:50478977..50479040,+!p1@SMARCD1!0.28!37.54!SMARCD1;;chr7:150974206..150974255,-!p1@SMARCD3!0.28!10.05!SMARCD3;;chr20:3388541..3388575,-!p2@C20orf194!0.28!6.03!C20orf194;;chr1:44679159..44679189,+!p2@DMAP1!0.28!4.02!DMAP1;;chr6:15246200..15246214,+!p2@JARID2!0.28!4.02!JARID2;;chr19:35168633..35168652,+!p2@ZNF302!0.28!3.35!ZNF302;;chr11:63684602..63684664,-!p1@RCOR2!0.28!2.68!RCOR2;;chr10:104155659..104155676,+!p4@NFKB2!0.28!1.34!NFKB2;;chr15:67358269..67358272,+!p15@SMAD3!0.28!1.34!SMAD3;;chr17:7370612..7370625,-!p9@ZBTB4!0.28!1.34!ZBTB4;;chr19:14117148..14117157,-!p2@RFX1!0.28!1.34!RFX1;;chr1:151032739..151032748,+!p6@MLLT11!0.28!1.34!MLLT11;;chr22:30163056..30163067,-!p3@ZMAT5!0.28!1.34!ZMAT5;;chr2:66662895..66662907,+!p3@MEIS1!0.28!1.34!MEIS1;;chr3:18486354..18486377,-!p2@SATB1!0.28!1.34!SATB1;;chr20:30795511..30795562,-!p1@PLAGL2!0.27!30.16!PLAGL2;;chr6:31515337..31515420,+!p1@NFKBIL1!0.27!30.16!NFKBIL1;;chr19:1592828..1592910,-!p2@MBD3!0.27!12.74!MBD3;;chr16:30537839..30537929,-!p1@ZNF768!0.27!10.05!ZNF768;;chr19:344786..344826,-!p1@MIER2!0.27!9.38!MIER2;;chr20:42295713..42295738,+!p2@MYBL2!0.27!9.38!MYBL2;;chr6:43139041..43139094,+!p3@SRF!0.27!8.71!SRF;;chr8:128749984..128750033,+!p4@MYC!0.27!5.36!MYC;;chr10:105110890..105110914,-!p2@PCGF6!0.27!5.36!PCGF6;;chr14:35872453..35872485,-!p2@NFKBIA!0.27!3.35!NFKBIA;;chr1:200379104..200379128,-!p2@ZNF281!0.27!3.35!ZNF281;;chr12:53773927..53773943,+!p3@SP1!0.27!2.68!SP1;;chr12:57919364..57919394,+!p4@MBD6!0.27!2.68!MBD6;;chr2:74375081..74375092,-!p2@BOLA3!0.27!2.68!BOLA3;;chr3:168864315..168864339,-!p2@MECOM!0.27!2.01!MECOM;;chr12:80084279..80084293,-!p8@PAWR!0.27!2.01!PA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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=CL:0000223,CL:0000377
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|fonse_cell_line_closure=
Line 67: Line 43:
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.ctss.bed.gz
|id=FF:11369-118A1
|is_a=EFO:0002091;;FF:0000189
|is_obsolete=
|library_id=CNhs11993
|library_id_phase_based=2:CNhs11993
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11369
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GGTAGC.11369
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11369
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GGTAGC.11369
|name=Tracheal Epithelial Cells, donor2
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=CA504-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1217
|rna_od260/230=
|rna_od260/280=
|rna_position=A1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118A1
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.GGTAGC
|sample_age=45
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=tracheal epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=45 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.96521669916481e-211!GO:0005737;cytoplasm;1.56740514307445e-202!GO:0043226;organelle;1.04304819372924e-158!GO:0043229;intracellular organelle;1.98078216483353e-158!GO:0043231;intracellular membrane-bound organelle;2.67319003655528e-145!GO:0043227;membrane-bound organelle;2.67319003655528e-145!GO:0044444;cytoplasmic part;6.17923339798375e-134!GO:0044422;organelle part;3.11294765645994e-127!GO:0044446;intracellular organelle part;1.05362083771867e-125!GO:0032991;macromolecular complex;8.4664792141413e-88!GO:0005515;protein binding;1.65486313947484e-83!GO:0030529;ribonucleoprotein complex;6.79447517218251e-76!GO:0044237;cellular metabolic process;1.33530100721785e-73!GO:0005739;mitochondrion;1.39564757554327e-73!GO:0044238;primary metabolic process;2.39900839106918e-72!GO:0043170;macromolecule metabolic process;8.31151951966432e-61!GO:0043233;organelle lumen;1.70601368853986e-59!GO:0031974;membrane-enclosed lumen;1.70601368853986e-59!GO:0005840;ribosome;6.64587885469842e-55!GO:0019538;protein metabolic process;1.83063332167369e-54!GO:0006412;translation;4.70360412925158e-53!GO:0009058;biosynthetic process;2.74474208138948e-52!GO:0044428;nuclear part;2.12025897718369e-51!GO:0003723;RNA binding;5.5125366994747e-51!GO:0031090;organelle membrane;9.64175450096718e-50!GO:0003735;structural constituent of ribosome;1.48994931155498e-49!GO:0044429;mitochondrial part;2.64654212415557e-49!GO:0044260;cellular macromolecule metabolic process;2.56624278056806e-48!GO:0044267;cellular protein metabolic process;7.05270733043329e-48!GO:0044249;cellular biosynthetic process;1.80898663969496e-47!GO:0043234;protein complex;2.99342579198992e-45!GO:0009059;macromolecule biosynthetic process;9.35034777789202e-44!GO:0016043;cellular component organization and biogenesis;2.8449418979045e-43!GO:0005634;nucleus;4.14679544062274e-43!GO:0005829;cytosol;3.31899866109247e-42!GO:0033279;ribosomal subunit;3.63877536961203e-42!GO:0031967;organelle envelope;6.98179017084405e-42!GO:0031975;envelope;1.80863410542161e-41!GO:0015031;protein transport;4.86032631065343e-40!GO:0033036;macromolecule localization;1.54810016251494e-39!GO:0008104;protein localization;3.9464003579976e-38!GO:0045184;establishment of protein localization;8.72696324609017e-38!GO:0043228;non-membrane-bound organelle;7.42175211292912e-37!GO:0043232;intracellular non-membrane-bound organelle;7.42175211292912e-37!GO:0006396;RNA processing;6.86030157793198e-35!GO:0065003;macromolecular complex assembly;1.4162986275609e-32!GO:0005740;mitochondrial envelope;2.9094880929728e-32!GO:0031981;nuclear lumen;8.5810100318839e-32!GO:0046907;intracellular transport;5.36130552671751e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.99983006716092e-31!GO:0006996;organelle organization and biogenesis;3.44270501954781e-30!GO:0031966;mitochondrial membrane;4.41201436667971e-30!GO:0022607;cellular component assembly;4.25434415893388e-29!GO:0006886;intracellular protein transport;2.42797076496816e-28!GO:0019866;organelle inner membrane;3.34971286699068e-28!GO:0043283;biopolymer metabolic process;1.03388882881167e-27!GO:0005743;mitochondrial inner membrane;6.52563519984077e-27!GO:0016071;mRNA metabolic process;3.77937645712487e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.1054226870454e-25!GO:0044445;cytosolic part;5.3052264610343e-24!GO:0008380;RNA splicing;1.18844788833127e-22!GO:0010467;gene expression;1.30345702092532e-22!GO:0031980;mitochondrial lumen;8.56370333980699e-22!GO:0005759;mitochondrial matrix;8.56370333980699e-22!GO:0015934;large ribosomal subunit;1.16848155178413e-21!GO:0015935;small ribosomal subunit;1.45069812764338e-21!GO:0006397;mRNA processing;1.47604630287594e-21!GO:0051641;cellular localization;9.74462375689756e-21!GO:0006119;oxidative phosphorylation;1.07739575802906e-20!GO:0051649;establishment of cellular localization;1.66955275675775e-20!GO:0044455;mitochondrial membrane part;8.86339179274648e-20!GO:0006259;DNA metabolic process;4.36276595946017e-19!GO:0012505;endomembrane system;6.34141977580545e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.93822527189865e-19!GO:0048770;pigment granule;5.58232766994909e-18!GO:0042470;melanosome;5.58232766994909e-18!GO:0005783;endoplasmic reticulum;9.01553679271212e-18!GO:0016874;ligase activity;1.95180429643031e-17!GO:0000166;nucleotide binding;2.64335862371606e-17!GO:0005654;nucleoplasm;3.02230960597602e-17!GO:0005681;spliceosome;3.0274688070463e-17!GO:0012501;programmed cell death;8.13465171634821e-17!GO:0051186;cofactor metabolic process;1.22406777362653e-16!GO:0006915;apoptosis;1.45353122936134e-16!GO:0006605;protein targeting;2.7033456017955e-16!GO:0005730;nucleolus;3.41345087553144e-16!GO:0007049;cell cycle;4.65550694395872e-16!GO:0006457;protein folding;4.96040789396893e-16!GO:0005746;mitochondrial respiratory chain;5.51250988334603e-16!GO:0016462;pyrophosphatase activity;8.67810110452076e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1319146674769e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14407864238915e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.14560733088251e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.37681186478386e-15!GO:0043285;biopolymer catabolic process;1.44595984961227e-15!GO:0043412;biopolymer modification;1.99289565104224e-15!GO:0044265;cellular macromolecule catabolic process;2.75754749801735e-15!GO:0009057;macromolecule catabolic process;3.98373201703835e-15!GO:0008219;cell death;4.20528805223907e-15!GO:0016265;death;4.20528805223907e-15!GO:0005761;mitochondrial ribosome;4.72343943047966e-15!GO:0000313;organellar ribosome;4.72343943047966e-15!GO:0044248;cellular catabolic process;7.58249690473497e-15!GO:0017111;nucleoside-triphosphatase activity;8.0199299139873e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.04322284608269e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.86706383569044e-14!GO:0006464;protein modification process;2.50261771812898e-14!GO:0044432;endoplasmic reticulum part;2.74192042105331e-14!GO:0005794;Golgi apparatus;3.51673403975907e-14!GO:0044451;nucleoplasm part;3.52232436632631e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.79025870737598e-14!GO:0003954;NADH dehydrogenase activity;3.79025870737598e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.79025870737598e-14!GO:0008134;transcription factor binding;5.85783670913207e-14!GO:0022618;protein-RNA complex assembly;1.53538160742281e-13!GO:0006732;coenzyme metabolic process;1.73030431465579e-13!GO:0006512;ubiquitin cycle;3.002042457835e-13!GO:0032553;ribonucleotide binding;4.69073244763747e-13!GO:0032555;purine ribonucleotide binding;4.69073244763747e-13!GO:0017076;purine nucleotide binding;4.69996584337856e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.40140255446283e-13!GO:0030163;protein catabolic process;9.29321606303395e-13!GO:0019941;modification-dependent protein catabolic process;1.09670754064434e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.09670754064434e-12!GO:0044257;cellular protein catabolic process;1.48785860731728e-12!GO:0022402;cell cycle process;1.5175046933078e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.84947149961142e-12!GO:0043687;post-translational protein modification;2.1721018994391e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.29025544871751e-12!GO:0042773;ATP synthesis coupled electron transport;2.29025544871751e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.38656287624937e-12!GO:0045271;respiratory chain complex I;2.38656287624937e-12!GO:0005747;mitochondrial respiratory chain complex I;2.38656287624937e-12!GO:0009055;electron carrier activity;2.49199793866855e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.61481817462117e-12!GO:0042254;ribosome biogenesis and assembly;5.15301251344118e-12!GO:0006461;protein complex assembly;5.79088307074047e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.68730922710174e-12!GO:0000278;mitotic cell cycle;1.06194335573468e-11!GO:0043067;regulation of programmed cell death;1.08333843862121e-11!GO:0042981;regulation of apoptosis;1.46725391524707e-11!GO:0051082;unfolded protein binding;1.7765659674827e-11!GO:0048193;Golgi vesicle transport;2.68030871617138e-11!GO:0016192;vesicle-mediated transport;3.17033176853169e-11!GO:0048523;negative regulation of cellular process;5.73938346175152e-11!GO:0008135;translation factor activity, nucleic acid binding;5.77761946928907e-11!GO:0009056;catabolic process;5.85914996614319e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.8487922245807e-11!GO:0005524;ATP binding;1.09031967114205e-10!GO:0005635;nuclear envelope;1.14378896238156e-10!GO:0005789;endoplasmic reticulum membrane;1.22102350733886e-10!GO:0032559;adenyl ribonucleotide binding;1.5133302426521e-10!GO:0017038;protein import;1.83145282212209e-10!GO:0030554;adenyl nucleotide binding;2.01537410876898e-10!GO:0006399;tRNA metabolic process;2.11327243607729e-10!GO:0006913;nucleocytoplasmic transport;2.95820077204479e-10!GO:0009259;ribonucleotide metabolic process;7.02383185904265e-10!GO:0051169;nuclear transport;7.10927555792087e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.10642258282368e-09!GO:0000375;RNA splicing, via transesterification reactions;1.10642258282368e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.10642258282368e-09!GO:0051188;cofactor biosynthetic process;1.10944661976426e-09!GO:0048519;negative regulation of biological process;1.18134548538389e-09!GO:0008565;protein transporter activity;1.40824003740984e-09!GO:0006163;purine nucleotide metabolic process;1.79854988510041e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.12345475963648e-09!GO:0016740;transferase activity;3.707022103727e-09!GO:0031965;nuclear membrane;4.05765127337044e-09!GO:0009150;purine ribonucleotide metabolic process;4.13260254394939e-09!GO:0000074;regulation of progression through cell cycle;4.32536180781505e-09!GO:0051726;regulation of cell cycle;4.56971495578945e-09!GO:0003712;transcription cofactor activity;4.92213050793014e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25802404732951e-09!GO:0005793;ER-Golgi intermediate compartment;7.14083472097015e-09!GO:0007005;mitochondrion organization and biogenesis;7.72421551826924e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.06213814820579e-09!GO:0006323;DNA packaging;9.06213814820579e-09!GO:0006164;purine nucleotide biosynthetic process;9.60832899770897e-09!GO:0009260;ribonucleotide biosynthetic process;9.92571425855934e-09!GO:0003743;translation initiation factor activity;1.04330067350936e-08!GO:0006413;translational initiation;1.07579704108396e-08!GO:0044453;nuclear membrane part;1.2498990705213e-08!GO:0051246;regulation of protein metabolic process;1.78232367067997e-08!GO:0048475;coated membrane;2.14719540722409e-08!GO:0030117;membrane coat;2.14719540722409e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.14719540722409e-08!GO:0051276;chromosome organization and biogenesis;2.14719540722409e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.34877344728015e-08!GO:0016491;oxidoreductase activity;2.44335485407498e-08!GO:0009141;nucleoside triphosphate metabolic process;2.46511984865621e-08!GO:0006364;rRNA processing;2.99668485105441e-08!GO:0005768;endosome;3.60210256720918e-08!GO:0065004;protein-DNA complex assembly;3.71640467594932e-08!GO:0016072;rRNA metabolic process;3.97589653228644e-08!GO:0006446;regulation of translational initiation;3.97589653228644e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.22789881229449e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.22789881229449e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.22789881229449e-08!GO:0008639;small protein conjugating enzyme activity;4.90379058348049e-08!GO:0006974;response to DNA damage stimulus;5.31694394279056e-08!GO:0022403;cell cycle phase;5.84307478281922e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.15064154926236e-08!GO:0006334;nucleosome assembly;7.20515780255029e-08!GO:0000087;M phase of mitotic cell cycle;7.25424429254171e-08!GO:0030120;vesicle coat;7.25424429254171e-08!GO:0030662;coated vesicle membrane;7.25424429254171e-08!GO:0007067;mitosis;8.78976881604794e-08!GO:0004842;ubiquitin-protein ligase activity;9.39261311299885e-08!GO:0006793;phosphorus metabolic process;9.89109893952858e-08!GO:0006796;phosphate metabolic process;9.89109893952858e-08!GO:0043038;amino acid activation;1.00697890368352e-07!GO:0006418;tRNA aminoacylation for protein translation;1.00697890368352e-07!GO:0043039;tRNA aminoacylation;1.00697890368352e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1074690754297e-07!GO:0005694;chromosome;1.16511477086678e-07!GO:0015986;ATP synthesis coupled proton transport;1.18596588458954e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18596588458954e-07!GO:0065002;intracellular protein transport across a membrane;1.23433297081316e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.2421957086557e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.2421957086557e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.26810523309748e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.26810523309748e-07!GO:0006366;transcription from RNA polymerase II promoter;1.33182078439865e-07!GO:0009108;coenzyme biosynthetic process;1.36983756238369e-07!GO:0048522;positive regulation of cellular process;1.55258101162942e-07!GO:0031497;chromatin assembly;1.69201971516049e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.79891854095061e-07!GO:0019787;small conjugating protein ligase activity;2.02772667745407e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.16533808497441e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.24776161323735e-07!GO:0006333;chromatin assembly or disassembly;2.29751665864558e-07!GO:0000785;chromatin;2.34427810852395e-07!GO:0042623;ATPase activity, coupled;2.43316972001358e-07!GO:0005643;nuclear pore;2.53170314189744e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70037277987083e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70037277987083e-07!GO:0044427;chromosomal part;3.25111927279279e-07!GO:0016604;nuclear body;3.25111927279279e-07!GO:0009060;aerobic respiration;3.68897945344604e-07!GO:0003924;GTPase activity;4.70602807118483e-07!GO:0009719;response to endogenous stimulus;4.90990999299575e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.26705282212445e-07!GO:0006260;DNA replication;5.66848681774134e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.00976119833723e-07!GO:0043069;negative regulation of programmed cell death;6.63600581027352e-07!GO:0019829;cation-transporting ATPase activity;6.82662831139053e-07!GO:0016881;acid-amino acid ligase activity;8.07371981248042e-07!GO:0016787;hydrolase activity;8.42389639784586e-07!GO:0016887;ATPase activity;8.68551586803588e-07!GO:0051170;nuclear import;8.74265940012392e-07!GO:0005773;vacuole;1.03337895208363e-06!GO:0006916;anti-apoptosis;1.04554699118548e-06!GO:0045333;cellular respiration;1.09813813404987e-06!GO:0009117;nucleotide metabolic process;1.12664621464843e-06!GO:0016779;nucleotidyltransferase activity;1.25538533842571e-06!GO:0046034;ATP metabolic process;1.26888524774595e-06!GO:0016310;phosphorylation;1.33565631495711e-06!GO:0006606;protein import into nucleus;1.60088338160412e-06!GO:0043066;negative regulation of apoptosis;1.63236835933627e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.74400988864803e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.00324403503556e-06!GO:0043623;cellular protein complex assembly;2.21775084111222e-06!GO:0006752;group transfer coenzyme metabolic process;2.24711364451053e-06!GO:0006754;ATP biosynthetic process;2.42363948812279e-06!GO:0006753;nucleoside phosphate metabolic process;2.42363948812279e-06!GO:0044431;Golgi apparatus part;2.80422542577782e-06!GO:0065009;regulation of a molecular function;3.29227429138756e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.66873068159798e-06!GO:0045259;proton-transporting ATP synthase complex;3.70620230877118e-06!GO:0003676;nucleic acid binding;3.99838166362513e-06!GO:0006281;DNA repair;4.69648617064392e-06!GO:0031252;leading edge;4.80827879586207e-06!GO:0019899;enzyme binding;4.83968776342251e-06!GO:0048518;positive regulation of biological process;4.84676277328222e-06!GO:0007243;protein kinase cascade;6.23762919755279e-06!GO:0042802;identical protein binding;6.25162011057466e-06!GO:0000323;lytic vacuole;6.55487913973014e-06!GO:0005764;lysosome;6.55487913973014e-06!GO:0046930;pore complex;6.87842328081496e-06!GO:0000786;nucleosome;7.53712804482436e-06!GO:0005762;mitochondrial large ribosomal subunit;8.52270444316581e-06!GO:0000315;organellar large ribosomal subunit;8.52270444316581e-06!GO:0006099;tricarboxylic acid cycle;9.89706833000405e-06!GO:0046356;acetyl-CoA catabolic process;9.89706833000405e-06!GO:0016070;RNA metabolic process;1.03266325499735e-05!GO:0005525;GTP binding;1.15610700200157e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.28276912982812e-05!GO:0004298;threonine endopeptidase activity;1.35891446249625e-05!GO:0006091;generation of precursor metabolites and energy;1.38736210815681e-05!GO:0003899;DNA-directed RNA polymerase activity;1.5606838834864e-05!GO:0008092;cytoskeletal protein binding;1.72872127266598e-05!GO:0000279;M phase;1.7864404201472e-05!GO:0043065;positive regulation of apoptosis;1.79568540100769e-05!GO:0016853;isomerase activity;1.87461375180761e-05!GO:0016607;nuclear speck;1.94831984919504e-05!GO:0043068;positive regulation of programmed cell death;1.98458676254278e-05!GO:0006084;acetyl-CoA metabolic process;2.10645025062309e-05!GO:0008654;phospholipid biosynthetic process;2.11457577602657e-05!GO:0032446;protein modification by small protein conjugation;2.41656990373927e-05!GO:0016567;protein ubiquitination;2.51457373527732e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.73434843380178e-05!GO:0005770;late endosome;2.87990019076591e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.9479570301295e-05!GO:0008026;ATP-dependent helicase activity;3.11219869299968e-05!GO:0031988;membrane-bound vesicle;3.11505703717176e-05!GO:0016126;sterol biosynthetic process;3.14456568109408e-05!GO:0030118;clathrin coat;3.48464709588453e-05!GO:0051187;cofactor catabolic process;3.56775315831716e-05!GO:0048468;cell development;3.57136782935183e-05!GO:0044440;endosomal part;3.69619475898737e-05!GO:0010008;endosome membrane;3.69619475898737e-05!GO:0050794;regulation of cellular process;3.99640888982875e-05!GO:0009967;positive regulation of signal transduction;4.11131352799709e-05!GO:0009109;coenzyme catabolic process;4.11131352799709e-05!GO:0008610;lipid biosynthetic process;4.19503666675786e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.23513087309632e-05!GO:0000139;Golgi membrane;4.74386418423736e-05!GO:0004386;helicase activity;5.27299124073341e-05!GO:0016044;membrane organization and biogenesis;5.29332242965084e-05!GO:0016564;transcription repressor activity;5.33639951285476e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.37121681683104e-05!GO:0045454;cell redox homeostasis;5.61360677007488e-05!GO:0003714;transcription corepressor activity;5.95202706385004e-05!GO:0005788;endoplasmic reticulum lumen;7.26134228603776e-05!GO:0005905;coated pit;7.52453189786031e-05!GO:0000314;organellar small ribosomal subunit;7.52453189786031e-05!GO:0005763;mitochondrial small ribosomal subunit;7.52453189786031e-05!GO:0003697;single-stranded DNA binding;7.94055971029542e-05!GO:0031324;negative regulation of cellular metabolic process;8.66946066378947e-05!GO:0007010;cytoskeleton organization and biogenesis;0.000101076135313328!GO:0006979;response to oxidative stress;0.00010692480506108!GO:0051301;cell division;0.000120026497586156!GO:0031982;vesicle;0.000130278144245968!GO:0043681;protein import into mitochondrion;0.000145978188187135!GO:0005798;Golgi-associated vesicle;0.000151274700033312!GO:0003713;transcription coactivator activity;0.000152066018580961!GO:0016563;transcription activator activity;0.000152981679450048!GO:0007006;mitochondrial membrane organization and biogenesis;0.000155598189426172!GO:0000245;spliceosome assembly;0.000158893750294864!GO:0006695;cholesterol biosynthetic process;0.000163081541611392!GO:0031410;cytoplasmic vesicle;0.000172937102055954!GO:0030029;actin filament-based process;0.000173314667994026!GO:0031968;organelle outer membrane;0.000187207383503939!GO:0045786;negative regulation of progression through cell cycle;0.000188869025838576!GO:0030119;AP-type membrane coat adaptor complex;0.000189565914213935!GO:0030132;clathrin coat of coated pit;0.000209371163849008!GO:0051427;hormone receptor binding;0.000209371163849008!GO:0030131;clathrin adaptor complex;0.000209371163849008!GO:0033116;ER-Golgi intermediate compartment membrane;0.000209739043160361!GO:0032561;guanyl ribonucleotide binding;0.000214054398890566!GO:0019001;guanyl nucleotide binding;0.000214054398890566!GO:0051325;interphase;0.000216386366929767!GO:0051329;interphase of mitotic cell cycle;0.000227953855928264!GO:0050657;nucleic acid transport;0.000227953855928264!GO:0051236;establishment of RNA localization;0.000227953855928264!GO:0050658;RNA transport;0.000227953855928264!GO:0006626;protein targeting to mitochondrion;0.000240666789554719!GO:0006403;RNA localization;0.000252710662051398!GO:0016568;chromatin modification;0.000258399769103022!GO:0006950;response to stress;0.000259580481534009!GO:0009892;negative regulation of metabolic process;0.000263230715251451!GO:0006082;organic acid metabolic process;0.000267800591633547!GO:0019867;outer membrane;0.000282890484960282!GO:0005741;mitochondrial outer membrane;0.000288377081637616!GO:0006917;induction of apoptosis;0.000302256484289581!GO:0008283;cell proliferation;0.000310465227898497!GO:0019752;carboxylic acid metabolic process;0.000328372545736542!GO:0050790;regulation of catalytic activity;0.0003285593559414!GO:0043566;structure-specific DNA binding;0.0003285593559414!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000333399199820509!GO:0005769;early endosome;0.000333399199820509!GO:0006839;mitochondrial transport;0.000347779795730157!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000350192019482158!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000353127750041347!GO:0035257;nuclear hormone receptor binding;0.000402778860345791!GO:0006613;cotranslational protein targeting to membrane;0.000419094802087212!GO:0019843;rRNA binding;0.000425146721673596!GO:0007264;small GTPase mediated signal transduction;0.000425551544667142!GO:0005048;signal sequence binding;0.000432071996627578!GO:0012502;induction of programmed cell death;0.000449011084229707!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00047367121799007!GO:0030867;rough endoplasmic reticulum membrane;0.000480216049101519!GO:0008033;tRNA processing;0.000501553843575978!GO:0015630;microtubule cytoskeleton;0.000538107301460697!GO:0003724;RNA helicase activity;0.00055030043066508!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000564494340278751!GO:0015980;energy derivation by oxidation of organic compounds;0.000564811398264549!GO:0016481;negative regulation of transcription;0.000581261454159201!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000796990483647769!GO:0005667;transcription factor complex;0.000801301147353591!GO:0005885;Arp2/3 protein complex;0.000808280828509944!GO:0005791;rough endoplasmic reticulum;0.00087119123060742!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00087400319756122!GO:0008632;apoptotic program;0.000945171473056046!GO:0030176;integral to endoplasmic reticulum membrane;0.000950130732471934!GO:0051920;peroxiredoxin activity;0.000950130732471934!GO:0046474;glycerophospholipid biosynthetic process;0.00112686898883257!GO:0008250;oligosaccharyl transferase complex;0.0011635271355502!GO:0043488;regulation of mRNA stability;0.00119121453479498!GO:0043487;regulation of RNA stability;0.00119121453479498!GO:0050662;coenzyme binding;0.00121965770624449!GO:0030658;transport vesicle membrane;0.00124242228595338!GO:0030125;clathrin vesicle coat;0.00129538221403491!GO:0030665;clathrin coated vesicle membrane;0.00129538221403491!GO:0050789;regulation of biological process;0.00134346847683663!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00135182489234736!GO:0001726;ruffle;0.00143452865663208!GO:0005819;spindle;0.00145245110898987!GO:0009165;nucleotide biosynthetic process;0.00152284665565132!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00156206685171469!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00161969807957803!GO:0016859;cis-trans isomerase activity;0.00163099002382182!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00171316179440758!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00171316179440758!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00171316179440758!GO:0004576;oligosaccharyl transferase activity;0.00176423603008411!GO:0046467;membrane lipid biosynthetic process;0.00177106031047963!GO:0048471;perinuclear region of cytoplasm;0.00182911005542953!GO:0006414;translational elongation;0.00186636100262058!GO:0044262;cellular carbohydrate metabolic process;0.00194677829589294!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00200814796681135!GO:0030880;RNA polymerase complex;0.00207958098201225!GO:0043021;ribonucleoprotein binding;0.00216497083915013!GO:0000151;ubiquitin ligase complex;0.00221027561205905!GO:0051338;regulation of transferase activity;0.00229921944535492!GO:0051028;mRNA transport;0.00250956468660628!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00253131164686557!GO:0015992;proton transport;0.00272060716206572!GO:0051252;regulation of RNA metabolic process;0.00277938565152218!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00278288641386131!GO:0000059;protein import into nucleus, docking;0.0028114123003258!GO:0048037;cofactor binding;0.00284082260833585!GO:0015631;tubulin binding;0.00284395357806844!GO:0005774;vacuolar membrane;0.00303408483248778!GO:0051789;response to protein stimulus;0.00306088139970076!GO:0006986;response to unfolded protein;0.00306088139970076!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00311727913356655!GO:0006818;hydrogen transport;0.00313171034146046!GO:0051540;metal cluster binding;0.00315639128533408!GO:0051536;iron-sulfur cluster binding;0.00315639128533408!GO:0005813;centrosome;0.00318815252443075!GO:0006401;RNA catabolic process;0.00322342141034343!GO:0006520;amino acid metabolic process;0.0032636910253388!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00345103188197643!GO:0007242;intracellular signaling cascade;0.00348270445474!GO:0016197;endosome transport;0.00362003515264823!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00365299200021809!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00381281043780055!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00390088200629958!GO:0048487;beta-tubulin binding;0.00393533775220007!GO:0008186;RNA-dependent ATPase activity;0.00402058228266316!GO:0030660;Golgi-associated vesicle membrane;0.00402058228266316!GO:0006595;polyamine metabolic process;0.00409403208518323!GO:0018196;peptidyl-asparagine modification;0.0043807781635669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0043807781635669!GO:0006612;protein targeting to membrane;0.00453499430710816!GO:0008637;apoptotic mitochondrial changes;0.00471750098091137!GO:0030031;cell projection biogenesis;0.00474353695582719!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00483862973972631!GO:0000428;DNA-directed RNA polymerase complex;0.00483862973972631!GO:0030133;transport vesicle;0.00488498466720572!GO:0008361;regulation of cell size;0.0048931580627482!GO:0044452;nucleolar part;0.00501651411293833!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00515845237230517!GO:0017166;vinculin binding;0.00520435369317918!GO:0007088;regulation of mitosis;0.00536940364334909!GO:0043549;regulation of kinase activity;0.00539101643950276!GO:0046822;regulation of nucleocytoplasmic transport;0.00548974912595392!GO:0001558;regulation of cell growth;0.00571953001433825!GO:0008139;nuclear localization sequence binding;0.00575502113305843!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00578172306682618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00578172306682618!GO:0046483;heterocycle metabolic process;0.00588910540884066!GO:0016125;sterol metabolic process;0.00621670514560369!GO:0016049;cell growth;0.00624930788913849!GO:0030663;COPI coated vesicle membrane;0.00624930788913849!GO:0030126;COPI vesicle coat;0.00624930788913849!GO:0031902;late endosome membrane;0.00633733326618957!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00650443558471964!GO:0015399;primary active transmembrane transporter activity;0.00650443558471964!GO:0005856;cytoskeleton;0.00651759275872284!GO:0030137;COPI-coated vesicle;0.00652223081507555!GO:0044255;cellular lipid metabolic process;0.00663101035985002!GO:0046489;phosphoinositide biosynthetic process;0.00663953797618962!GO:0030659;cytoplasmic vesicle membrane;0.00669409062855583!GO:0051128;regulation of cellular component organization and biogenesis;0.0068918859164218!GO:0051168;nuclear export;0.00694828972824463!GO:0051287;NAD binding;0.00707855388087254!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00708778587555389!GO:0005815;microtubule organizing center;0.00743752259550842!GO:0006118;electron transport;0.00750637482053618!GO:0006417;regulation of translation;0.00758077807003077!GO:0030027;lamellipodium;0.00768523713259772!GO:0006261;DNA-dependent DNA replication;0.00783873662776111!GO:0008243;plasminogen activator activity;0.00784118171854012!GO:0035258;steroid hormone receptor binding;0.0078832654701449!GO:0051348;negative regulation of transferase activity;0.00806169249872418!GO:0045941;positive regulation of transcription;0.00809768049124382!GO:0044437;vacuolar part;0.00837138614911534!GO:0004004;ATP-dependent RNA helicase activity;0.00852806471476801!GO:0005765;lysosomal membrane;0.00868463382669264!GO:0016791;phosphoric monoester hydrolase activity;0.00879672572728976!GO:0005149;interleukin-1 receptor binding;0.00886459834973075!GO:0033673;negative regulation of kinase activity;0.00886459834973075!GO:0006469;negative regulation of protein kinase activity;0.00886459834973075!GO:0008047;enzyme activator activity;0.00919348521162677!GO:0051101;regulation of DNA binding;0.00928141566407502!GO:0006066;alcohol metabolic process;0.00937381086047892!GO:0051098;regulation of binding;0.00959082687072554!GO:0005684;U2-dependent spliceosome;0.00996588269568136!GO:0000049;tRNA binding;0.0104052801488572!GO:0009166;nucleotide catabolic process;0.0110946230505196!GO:0006778;porphyrin metabolic process;0.0113279656259188!GO:0033013;tetrapyrrole metabolic process;0.0113279656259188!GO:0055092;sterol homeostasis;0.0115230626105591!GO:0042632;cholesterol homeostasis;0.0115230626105591!GO:0009116;nucleoside metabolic process;0.0115263348677447!GO:0043284;biopolymer biosynthetic process;0.0118746801112193!GO:0006650;glycerophospholipid metabolic process;0.0118746801112193!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0120598067574202!GO:0006643;membrane lipid metabolic process;0.0125550829530289!GO:0006611;protein export from nucleus;0.012836650935058!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130552001546393!GO:0009966;regulation of signal transduction;0.0134058343904394!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0134082007222182!GO:0045859;regulation of protein kinase activity;0.0134531874596308!GO:0006891;intra-Golgi vesicle-mediated transport;0.0142198690229717!GO:0006402;mRNA catabolic process;0.0142593633576441!GO:0030041;actin filament polymerization;0.0143425301092013!GO:0051087;chaperone binding;0.0143571455372698!GO:0006509;membrane protein ectodomain proteolysis;0.0143571455372698!GO:0033619;membrane protein proteolysis;0.0143571455372698!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0143571455372698!GO:0009112;nucleobase metabolic process;0.0150763670721577!GO:0022890;inorganic cation transmembrane transporter activity;0.0153508190422917!GO:0048144;fibroblast proliferation;0.0154400437744486!GO:0048145;regulation of fibroblast proliferation;0.0154400437744486!GO:0006779;porphyrin biosynthetic process;0.0157738427340137!GO:0033014;tetrapyrrole biosynthetic process;0.0157738427340137!GO:0045893;positive regulation of transcription, DNA-dependent;0.0159438463827803!GO:0005832;chaperonin-containing T-complex;0.0161487427798169!GO:0016311;dephosphorylation;0.0161981811280732!GO:0045792;negative regulation of cell size;0.0162800900649567!GO:0003684;damaged DNA binding;0.0165517068819813!GO:0044433;cytoplasmic vesicle part;0.0165822469425255!GO:0006897;endocytosis;0.0166856369460504!GO:0010324;membrane invagination;0.0166856369460504!GO:0001836;release of cytochrome c from mitochondria;0.0168198762035039!GO:0006740;NADPH regeneration;0.0168886026662557!GO:0006098;pentose-phosphate shunt;0.0168886026662557!GO:0051235;maintenance of localization;0.0170110443679981!GO:0030308;negative regulation of cell growth;0.0170830557839807!GO:0030128;clathrin coat of endocytic vesicle;0.0175720749690395!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0175720749690395!GO:0030122;AP-2 adaptor complex;0.0175720749690395!GO:0006749;glutathione metabolic process;0.0176156104928095!GO:0016301;kinase activity;0.0179760371010756!GO:0048146;positive regulation of fibroblast proliferation;0.0179760371010756!GO:0007265;Ras protein signal transduction;0.0179760371010756!GO:0031072;heat shock protein binding;0.0183461680451036!GO:0003779;actin binding;0.0184843452210136!GO:0031272;regulation of pseudopodium formation;0.0185125211866189!GO:0031269;pseudopodium formation;0.0185125211866189!GO:0031344;regulation of cell projection organization and biogenesis;0.0185125211866189!GO:0031268;pseudopodium organization and biogenesis;0.0185125211866189!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0185125211866189!GO:0031274;positive regulation of pseudopodium formation;0.0185125211866189!GO:0031529;ruffle organization and biogenesis;0.0186268416895425!GO:0045334;clathrin-coated endocytic vesicle;0.0192034621018625!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0194396495481915!GO:0004721;phosphoprotein phosphatase activity;0.0195380090471064!GO:0009303;rRNA transcription;0.0202481935998691!GO:0043022;ribosome binding;0.020437720648214!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0208044766687338!GO:0015002;heme-copper terminal oxidase activity;0.0208044766687338!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0208044766687338!GO:0004129;cytochrome-c oxidase activity;0.0208044766687338!GO:0003729;mRNA binding;0.0208745437157879!GO:0045926;negative regulation of growth;0.0215977027684388!GO:0000075;cell cycle checkpoint;0.0216283772227287!GO:0035035;histone acetyltransferase binding;0.0219048199156707!GO:0005657;replication fork;0.0220163391603594!GO:0009889;regulation of biosynthetic process;0.0220741953064509!GO:0008538;proteasome activator activity;0.022347436386883!GO:0045892;negative regulation of transcription, DNA-dependent;0.0228953705987078!GO:0043086;negative regulation of catalytic activity;0.0228953705987078!GO:0030100;regulation of endocytosis;0.0228953705987078!GO:0006007;glucose catabolic process;0.0231674061432422!GO:0008652;amino acid biosynthetic process;0.0232209470513527!GO:0006354;RNA elongation;0.0232250120656114!GO:0046519;sphingoid metabolic process;0.0233348265905924!GO:0019318;hexose metabolic process;0.0233348265905924!GO:0018193;peptidyl-amino acid modification;0.0233582323891558!GO:0005862;muscle thin filament tropomyosin;0.0234654645764849!GO:0030521;androgen receptor signaling pathway;0.0236891488386719!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0239680383165557!GO:0000082;G1/S transition of mitotic cell cycle;0.0239680383165557!GO:0031301;integral to organelle membrane;0.0240809077555451!GO:0030145;manganese ion binding;0.0240809077555451!GO:0043154;negative regulation of caspase activity;0.0240809077555451!GO:0016408;C-acyltransferase activity;0.0244357391334097!GO:0006383;transcription from RNA polymerase III promoter;0.0246640540931561!GO:0005912;adherens junction;0.0247766387659562!GO:0008180;signalosome;0.0248224109771225!GO:0055088;lipid homeostasis;0.0249351391619542!GO:0008629;induction of apoptosis by intracellular signals;0.0250378815183213!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0251908295220736!GO:0007050;cell cycle arrest;0.0252391289282531!GO:0005996;monosaccharide metabolic process;0.0256943852218669!GO:0006629;lipid metabolic process;0.0256971713369473!GO:0003746;translation elongation factor activity;0.0260636557612458!GO:0030833;regulation of actin filament polymerization;0.0261986520375708!GO:0030134;ER to Golgi transport vesicle;0.0262044118938847!GO:0000209;protein polyubiquitination;0.0269211819054164!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0269227800140707!GO:0019904;protein domain specific binding;0.0270090901835068!GO:0046426;negative regulation of JAK-STAT cascade;0.0271705909811494!GO:0016363;nuclear matrix;0.0276557092668658!GO:0042168;heme metabolic process;0.0277055463877174!GO:0005925;focal adhesion;0.0278510415021228!GO:0003711;transcription elongation regulator activity;0.027860708936747!GO:0031326;regulation of cellular biosynthetic process;0.0286482290642787!GO:0012506;vesicle membrane;0.0289461403990117!GO:0000096;sulfur amino acid metabolic process;0.0290084375471495!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0291761097506033!GO:0006807;nitrogen compound metabolic process;0.029208100296988!GO:0030032;lamellipodium biogenesis;0.029208100296988!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0292581985920843!GO:0004674;protein serine/threonine kinase activity;0.0293684006338435!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0295102918436627!GO:0006644;phospholipid metabolic process;0.0296977155279247!GO:0008094;DNA-dependent ATPase activity;0.0297577522281538!GO:0043189;H4/H2A histone acetyltransferase complex;0.0299234975854744!GO:0043492;ATPase activity, coupled to movement of substances;0.0301224518194206!GO:0006506;GPI anchor biosynthetic process;0.0302485058363751!GO:0051272;positive regulation of cell motility;0.0303712112223579!GO:0040017;positive regulation of locomotion;0.0303712112223579!GO:0048660;regulation of smooth muscle cell proliferation;0.0310692136566655!GO:0001666;response to hypoxia;0.0311851607395617!GO:0030503;regulation of cell redox homeostasis;0.031254283581151!GO:0008154;actin polymerization and/or depolymerization;0.031254283581151!GO:0003690;double-stranded DNA binding;0.0312618028103792!GO:0032507;maintenance of cellular protein localization;0.0318039900227133!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.031948357297914!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0320010758788659!GO:0045039;protein import into mitochondrial inner membrane;0.0320010758788659!GO:0006733;oxidoreduction coenzyme metabolic process;0.0322727548048495!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.03264650332661!GO:0016584;nucleosome positioning;0.0341338563810353!GO:0005874;microtubule;0.0346106873208914!GO:0050178;phenylpyruvate tautomerase activity;0.0346972071292197!GO:0065007;biological regulation;0.0347242336872606!GO:0004680;casein kinase activity;0.0348668435907935!GO:0035267;NuA4 histone acetyltransferase complex;0.035366779989481!GO:0005869;dynactin complex;0.0355958755032207!GO:0048500;signal recognition particle;0.0361499282978844!GO:0006730;one-carbon compound metabolic process;0.0361975942340086!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0363243586790212!GO:0005637;nuclear inner membrane;0.0367648224251374!GO:0030384;phosphoinositide metabolic process;0.0370605231860874!GO:0030127;COPII vesicle coat;0.0372082067393283!GO:0012507;ER to Golgi transport vesicle membrane;0.0372082067393283!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0372719741398116!GO:0010257;NADH dehydrogenase complex assembly;0.0372719741398116!GO:0033108;mitochondrial respiratory chain complex assembly;0.0372719741398116!GO:0016860;intramolecular oxidoreductase activity;0.0373754005714459!GO:0006519;amino acid and derivative metabolic process;0.0375654137062202!GO:0006144;purine base metabolic process;0.0375654137062202!GO:0009893;positive regulation of metabolic process;0.0375882100700649!GO:0000030;mannosyltransferase activity;0.0376496910533051!GO:0006458;'de novo' protein folding;0.0378892844768489!GO:0051084;'de novo' posttranslational protein folding;0.0378892844768489!GO:0005758;mitochondrial intermembrane space;0.0381015950596283!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0381028234474316!GO:0043433;negative regulation of transcription factor activity;0.0381028234474316!GO:0006783;heme biosynthetic process;0.0383636481713286!GO:0032508;DNA duplex unwinding;0.0386166286036993!GO:0032392;DNA geometric change;0.0386166286036993!GO:0008426;protein kinase C inhibitor activity;0.0389387463252768!GO:0006767;water-soluble vitamin metabolic process;0.0391199281738036!GO:0040008;regulation of growth;0.0394044534487934!GO:0019206;nucleoside kinase activity;0.0402131305885522!GO:0006289;nucleotide-excision repair;0.0406478157306137!GO:0016272;prefoldin complex;0.0410224262546962!GO:0040029;regulation of gene expression, epigenetic;0.0413879266767397!GO:0006505;GPI anchor metabolic process;0.0415816939798055!GO:0006596;polyamine biosynthetic process;0.0423974194106815!GO:0008203;cholesterol metabolic process;0.0424863676734515!GO:0033559;unsaturated fatty acid metabolic process;0.0426544080676487!GO:0006636;unsaturated fatty acid biosynthetic process;0.0426544080676487!GO:0015036;disulfide oxidoreductase activity;0.0426850260853814!GO:0006892;post-Golgi vesicle-mediated transport;0.0426850260853814!GO:0030911;TPR domain binding;0.0432780381860711!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0434544253238032!GO:0006352;transcription initiation;0.0438917074759624!GO:0043281;regulation of caspase activity;0.0439506054215813!GO:0045936;negative regulation of phosphate metabolic process;0.0453063848897835!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0453063848897835!GO:0008168;methyltransferase activity;0.0453063848897835!GO:0016741;transferase activity, transferring one-carbon groups;0.0454502982871181!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0457016422701604!GO:0012510;trans-Golgi network transport vesicle membrane;0.0457016422701604!GO:0005092;GDP-dissociation inhibitor activity;0.0462606748199234!GO:0046983;protein dimerization activity;0.0462606748199234!GO:0004364;glutathione transferase activity;0.0462606748199234!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0465093648857363!GO:0009119;ribonucleoside metabolic process;0.0465935713955987!GO:0051336;regulation of hydrolase activity;0.0467178361379372!GO:0004518;nuclease activity;0.0467398254118515!GO:0005096;GTPase activator activity;0.0471987077478566!GO:0046870;cadmium ion binding;0.0472558119005747!GO:0033157;regulation of intracellular protein transport;0.047281857052744!GO:0042306;regulation of protein import into nucleus;0.047281857052744!GO:0008022;protein C-terminus binding;0.0473239605614331!GO:0000123;histone acetyltransferase complex;0.0473239605614331!GO:0003678;DNA helicase activity;0.0473369251902554!GO:0008017;microtubule binding;0.0481279603296553!GO:0006633;fatty acid biosynthetic process;0.0486127043800793!GO:0031124;mRNA 3'-end processing;0.0493502965890563!GO:0005784;translocon complex;0.0494344762011895!GO:0008234;cysteine-type peptidase activity;0.0494974181398401!GO:0008312;7S RNA binding;0.0497070703182133!GO:0006693;prostaglandin metabolic process;0.0499737436955688!GO:0006692;prostanoid metabolic process;0.0499737436955688
|sample_id=11369
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=trachea
|top_motifs=PPARG:2.6942259901;TP53:2.34604652751;TBX4,5:2.21442870651;POU2F1..3:2.17551536297;TBP:1.8757432982;NR5A1,2:1.71758701792;VSX1,2:1.552138092;ZNF148:1.49273742398;ZEB1:1.48910767855;XCPE1{core}:1.39925498184;SNAI1..3:1.2920564999;MYOD1:1.27213821365;PAX1,9:1.26665777458;GTF2A1,2:1.25752175819;ZNF423:1.23576593634;HMX1:1.13317630003;TFAP2{A,C}:1.07492587528;SP1:1.05379745987;NKX2-3_NKX2-5:1.04153407908;TFCP2:0.984874002322;GLI1..3:0.969182518998;TEAD1:0.865321542613;MTF1:0.865241340818;RXRA_VDR{dimer}:0.834076537571;NANOG:0.800102934819;NFIL3:0.782037027414;FOS_FOS{B,L1}_JUN{B,D}:0.769983179311;LMO2:0.757989216364;ADNP_IRX_SIX_ZHX:0.661197228779;TLX1..3_NFIC{dimer}:0.642539447429;ARID5B:0.640828897464;POU6F1:0.632026663294;HAND1,2:0.624974145619;ZNF238:0.621516568629;EBF1:0.547015443186;BACH2:0.530640568267;NFE2:0.461799175794;TFAP4:0.446722418276;ONECUT1,2:0.439972884676;ESR1:0.403383963044;bHLH_family:0.388523504859;AR:0.384601748163;HIF1A:0.379277878143;FOSL2:0.367516749338;GZF1:0.36140132014;RXR{A,B,G}:0.32523614113;STAT5{A,B}:0.317030811529;POU1F1:0.283295162025;GFI1:0.275927482333;IKZF1:0.25758491696;REST:0.228400235801;GFI1B:0.211779216843;PBX1:0.19675736531;ZBTB6:0.174231120572;ETS1,2:0.173015123027;SMAD1..7,9:0.160666640233;PAX2:0.160071131729;FOXM1:0.148660741309;ZIC1..3:0.1389665327;LEF1_TCF7_TCF7L1,2:0.128000123036;SPZ1:0.114875669498;HOX{A5,B5}:0.074981249617;SRF:0.0592558938388;SOX17:0.0369902003146;GCM1,2:0.0283516701044;HLF:0.0221983617543;HNF4A_NR2F1,2:0.0158334973078;MAZ:0.0144461948783;CEBPA,B_DDIT3:0.00456538815179;OCT4_SOX2{dimer}:-0.00761355161511;SOX{8,9,10}:-0.0113665336629;POU3F1..4:-0.0201565866097;SOX2:-0.0415337524633;JUN:-0.0463719784915;NFE2L1:-0.056456495106;EP300:-0.0602012471321;NFKB1_REL_RELA:-0.0674864292092;ZNF143:-0.0845010008589;CDC5L:-0.0883727068156;HIC1:-0.094460121901;NFY{A,B,C}:-0.10124757798;FOXQ1:-0.103653437053;NKX3-2:-0.108587414686;GATA6:-0.121002006264;TFDP1:-0.121027828757;ELF1,2,4:-0.137923035224;TFAP2B:-0.160885252024;E2F1..5:-0.164700697801;GTF2I:-0.16653640453;PAX5:-0.169551170343;RREB1:-0.175399197963;CRX:-0.190111696617;RUNX1..3:-0.194140225855;NKX2-2,8:-0.202047474533;SPIB:-0.206803657947;NR1H4:-0.208306481268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.23793500668;ELK1,4_GABP{A,B1}:-0.244209190319;POU5F1:-0.253502466874;FOXL1:-0.269073628915;FOX{F1,F2,J1}:-0.277233975007;NFE2L2:-0.291107028222;UFEwm:-0.291854158824;HES1:-0.321711853969;YY1:-0.329717593567;STAT2,4,6:-0.347422857917;SPI1:-0.348068003513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.3620130119;RBPJ:-0.365263828858;MED-1{core}:-0.367424676398;HNF1A:-0.371354183157;NR6A1:-0.372976244462;LHX3,4:-0.378342219308;PITX1..3:-0.379811795406;ESRRA:-0.43139646959;PAX8:-0.456148520952;EGR1..3:-0.45693312203;KLF4:-0.469922214658;PDX1:-0.490885200492;EN1,2:-0.50749355547;HOX{A4,D4}:-0.519973838169;IRF7:-0.525266730232;ATF2:-0.547722927795;HOX{A6,A7,B6,B7}:-0.558481749364;NKX2-1,4:-0.560519677302;PATZ1:-0.569776027102;MEF2{A,B,C,D}:-0.603282103227;MYFfamily:-0.60989919969;CUX2:-0.612805150833;MYBL2:-0.619126296622;ZFP161:-0.625878929834;RFX1:-0.644369196574;TLX2:-0.67052026771;NR3C1:-0.679581181822;MYB:-0.681155166696;NHLH1,2:-0.683015365526;HSF1,2:-0.685460047003;ATF5_CREB3:-0.687757787736;CREB1:-0.704968601435;ALX4:-0.724864747875;HOXA9_MEIS1:-0.732682773359;NANOG{mouse}:-0.73500280991;TAL1_TCF{3,4,12}:-0.735366618138;NFATC1..3:-0.742468495276;NRF1:-0.794947896442;FOXN1:-0.804344162631;RFX2..5_RFXANK_RFXAP:-0.824843688934;ZNF384:-0.827667163943;RORA:-0.835696822426;ATF4:-0.840676453131;TOPORS:-0.861383327958;PRRX1,2:-0.880769433166;MZF1:-0.893074225108;T:-0.89609490145;PAX6:-0.919648485465;PAX4:-0.927496816923;TGIF1:-0.968494627174;MAFB:-1.00160057695;IRF1,2:-1.00775551364;PRDM1:-1.02907576529;TEF:-1.03480730038;DBP:-1.04059721307;BREu{core}:-1.04148693823;MTE{core}:-1.0727698555;HBP1_HMGB_SSRP1_UBTF:-1.16314193307;ZBTB16:-1.20675943594;SOX5:-1.22054037915;AHR_ARNT_ARNT2:-1.28885472546;ATF6:-1.30479174331;ALX1:-1.3156323721;FOX{D1,D2}:-1.31789431337;PAX3,7:-1.34024809722;DMAP1_NCOR{1,2}_SMARC:-1.35473629295;NKX3-1:-1.36536301669;AIRE:-1.39408984713;SREBF1,2:-1.43823328953;NFIX:-1.44286434082;CDX1,2,4:-1.46205933856;HMGA1,2:-1.50973897376;XBP1:-1.53008245563;FOXO1,3,4:-1.53537369165;STAT1,3:-1.53958777367;FOXP3:-1.54891889565;FOXA2:-1.55322503285;GATA4:-1.60816971825;FOXP1:-1.69577959881;FOX{I1,J2}:-1.76075181733;FOXD3:-1.77825191249;NKX6-1,2:-1.79681095893;EVI1:-1.80583899834;IKZF2:-1.83048592096;BPTF:-2.11728546848
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11369-118A1;search_select_hide=table117:FF:11369-118A1
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Tracheal Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11993
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetrachea
dev stage45 years old adult
sexmale
age45
cell typetracheal epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1217
catalog numberCA504-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004729
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11993 CAGE DRX008523 DRR009395
Accession ID Hg19

Library idBAMCTSS
CNhs11993 DRZ000820 DRZ002205
Accession ID Hg38

Library idBAMCTSS
CNhs11993 DRZ012170 DRZ013555
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004729
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GGTAGC sRNA-Seq DRX037089 DRR041455
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GGTAGC DRZ007097


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0868
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.223
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.295
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.719
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.755
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte1.233
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.215
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.033
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.223
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.239
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.109
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.223
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11993

Jaspar motifP-value
MA0002.20.314
MA0003.10.276
MA0004.10.784
MA0006.10.13
MA0007.10.114
MA0009.10.0913
MA0014.10.613
MA0017.10.137
MA0018.20.0609
MA0019.10.249
MA0024.10.293
MA0025.10.393
MA0027.10.483
MA0028.10.725
MA0029.10.708
MA0030.10.903
MA0031.10.115
MA0035.20.343
MA0038.10.445
MA0039.20.00772
MA0040.10.581
MA0041.10.26
MA0042.10.856
MA0043.10.172
MA0046.10.877
MA0047.20.725
MA0048.10.704
MA0050.12.98038e-7
MA0051.10.00137
MA0052.10.66
MA0055.10.0401
MA0057.10.0716
MA0058.10.56
MA0059.10.441
MA0060.10.275
MA0061.10.627
MA0062.20.67
MA0065.20.00522
MA0066.10.0288
MA0067.10.279
MA0068.10.0237
MA0069.10.651
MA0070.10.91
MA0071.10.826
MA0072.10.488
MA0073.10.65
MA0074.10.299
MA0076.10.249
MA0077.10.659
MA0078.10.794
MA0079.20.361
MA0080.20.299
MA0081.10.881
MA0083.10.032
MA0084.10.342
MA0087.10.693
MA0088.10.443
MA0090.10.00931
MA0091.10.913
MA0092.10.349
MA0093.10.643
MA0099.29.80963e-18
MA0100.10.036
MA0101.10.997
MA0102.20.13
MA0103.16.92503e-5
MA0104.20.857
MA0105.10.754
MA0106.12.53547e-6
MA0107.10.801
MA0108.23.63079e-15
MA0111.10.583
MA0112.20.016
MA0113.10.675
MA0114.10.0542
MA0115.10.617
MA0116.10.202
MA0117.10.589
MA0119.10.147
MA0122.10.813
MA0124.10.433
MA0125.10.208
MA0131.10.305
MA0135.10.0322
MA0136.10.131
MA0137.20.148
MA0138.20.152
MA0139.10.8
MA0140.10.833
MA0141.10.351
MA0142.10.0143
MA0143.10.473
MA0144.10.904
MA0145.10.0248
MA0146.10.038
MA0147.10.912
MA0148.10.64
MA0149.10.173
MA0150.10.0614
MA0152.10.0849
MA0153.10.188
MA0154.10.237
MA0155.10.238
MA0156.10.514
MA0157.10.288
MA0159.10.29
MA0160.10.22
MA0162.10.117
MA0163.10.43
MA0164.10.929
MA0258.10.038
MA0259.10.768



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11993

Novel motifP-value
10.638
100.55
1000.382
1010.00351
1020.24
1030.274
1040.396
1050.0712
1060.0189
1070.0152
1080.527
1090.00661
110.144
1100.109
1110.789
1120.299
1130.424
1140.662
1150.15
1160.183
1170.433
1180.877
1190.185
120.247
1200.37
1210.127
1220.0167
1230.411
1240.421
1250.87
1260.82
1270.0241
1280.197
1290.439
130.0488
1300.327
1310.369
1320.711
1330.0227
1340.209
1350.267
1360.176
1370.159
1380.672
1390.862
140.786
1400.698
1410.71
1420.0256
1430.618
1440.249
1450.189
1460.00198
1470.273
1480.883
1490.851
150.942
1500.143
1510.355
1520.0368
1530.896
1540.443
1550.546
1560.746
1570.998
1580.244
1590.76
160.0706
1600.186
1610.396
1620.0859
1630.845
1640.75
1650.526
1660.218
1670.269
1680.545
1690.0686
170.108
180.659
190.46
20.113
200.671
210.673
220.147
230.333
240.0413
250.971
260.0696
270.205
280.924
290.735
30.734
300.125
310.674
320.622
330.236
340.326
350.49
360.596
370.22
380.372
390.198
40.605
400.0134
410.879
420.983
430.497
440.924
450.0774
460.387
470.33
480.113
490.909
50.389
500.422
510.622
520.296
530.517
540.773
550.781
560.419
570.691
580.879
590.0564
60.203
600.259
610.928
620.931
630.184
640.367
650.158
660.557
670.639
680.885
690.117
70.388
700.0472
710.353
720.806
730.023
740.0907
750.449
760.814
770.018
780.144
790.99
80.14
800.898
810.745
820.78
830.859
840.72
850.371
860.919
870.0138
880.519
890.198
90.437
900.0036
910.725
920.769
930.72
940.688
950.141
960.761
970.741
980.287
990.0305



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11993


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)

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