FFCP PHASE1:Hg19::chr2:238277567..238277581,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!1.01e-39!180;CL:0000057!4.55e-28!75;CL:0000048!2.62e-18!430;CL:0000723!1.07e-17!436;CL:0000183!2.56e-17!59;CL:0000680!3.25e-17!57;CL:0000056!3.25e-17!57;CL:0000355!3.25e-17!57;CL:0000034!8.62e-17!444;CL:0000187!8.70e-17!54;CL:0002620!4.03e-14!23;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0002371!7.18e-12!591;CL:0002320!5.84e-10!365;CL:0000192!6.05e-10!42;CL:0000514!6.05e-10!42;CL:0000144!8.24e-09!625;CL:0000499!1.97e-08!27;CL:0000188!6.19e-08!9;CL:0000134!1.06e-07!358 | |ontology_enrichment_celltype=CL:0000055!1.01e-39!180;CL:0000057!4.55e-28!75;CL:0000048!2.62e-18!430;CL:0000723!1.07e-17!436;CL:0000183!2.56e-17!59;CL:0000680!3.25e-17!57;CL:0000056!3.25e-17!57;CL:0000355!3.25e-17!57;CL:0000034!8.62e-17!444;CL:0000187!8.70e-17!54;CL:0002620!4.03e-14!23;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0002371!7.18e-12!591;CL:0002320!5.84e-10!365;CL:0000192!6.05e-10!42;CL:0000514!6.05e-10!42;CL:0000144!8.24e-09!625;CL:0000499!1.97e-08!27;CL:0000188!6.19e-08!9;CL:0000134!1.06e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000134;5.96e-12;55!CL:0000723;1.30e-11;61!CL:0000188;7.87e-11;9!CL:0000048;1.30e-10;58!CL:0002620;1.31e-09;23!CL:0002570;1.95e-08;8!CL:0000034;3.15e-08;69!CL:0000057;1.40e-07;73!CL:0002552;1.45e-07;5!CL:0002320;2.55e-07;188!CL:0000499;3.24e-07;28 | |ontology_enrichment_celltype_v019=CL:0000134;5.96e-12;55!CL:0000723;1.30e-11;61!CL:0000188;7.87e-11;9!CL:0000048;1.30e-10;58!CL:0002620;1.31e-09;23!CL:0002570;1.95e-08;8!CL:0000034;3.15e-08;69!CL:0000057;1.40e-07;73!CL:0002552;1.45e-07;5!CL:0002320;2.55e-07;188!CL:0000499;3.24e-07;28 | ||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.93e-18,427;CL:0000057,2.88e-18,76;CL:0000723,9.49e-18,433;CL:0000034,7.38e-17,441;CL:0002320,6.61e-14,361;CL:0000188,1.76e-11,9;CL:0000134,1.71e-10,354;CL:0000680,8.50e-10,58;CL:0000056,8.50e-10,58;CL:0000355,8.50e-10,58;CL:0002620,1.41e-09,23;CL:0000187,5.52e-09,55;CL:0002570,1.83e-08,8;CL:0000219,4.63e-08,386;CL:0002552,1.48e-07,5;CL:0000393,1.79e-07,61;CL:0000211,1.79e-07,61;CL:0000499,3.55e-07,28 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;5.74e-08;5!DOID:450;5.74e-08;5!DOID:66;5.74e-08;5!DOID:423;5.74e-08;5!DOID:0080000;5.74e-08;5!DOID:11722;5.74e-08;5 | |ontology_enrichment_disease_v019=DOID:17;5.74e-08;5!DOID:450;5.74e-08;5!DOID:66;5.74e-08;5!DOID:423;5.74e-08;5!DOID:0080000;5.74e-08;5!DOID:11722;5.74e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,4.90e-08,5;DOID:450,4.90e-08,5;DOID:66,4.90e-08,5;DOID:423,4.90e-08,5;DOID:0080000,4.90e-08,5;DOID:11722,4.90e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.21e-20!83;UBERON:0002329!3.21e-20!83;UBERON:0003077!3.21e-20!83;UBERON:0003059!3.21e-20!83;UBERON:0007282!3.21e-20!83;UBERON:0009618!3.21e-20!83;UBERON:0007285!3.21e-20!83;UBERON:0004290!9.04e-19!70;UBERON:0002385!7.55e-16!63;UBERON:0001015!7.55e-16!63;UBERON:0000383!7.55e-16!63;UBERON:0000486!2.90e-15!82;UBERON:0001134!4.49e-15!61;UBERON:0002036!4.49e-15!61;UBERON:0003082!4.49e-15!61;UBERON:0002199!2.23e-12!45;UBERON:0002416!2.23e-12!45;UBERON:0005256!3.82e-12!143;UBERON:0003102!1.07e-11!95;UBERON:0002097!2.78e-10!40;UBERON:0002384!2.45e-09!375;UBERON:0002100!1.28e-08!216;UBERON:0000475!9.92e-08!365 | |ontology_enrichment_uberon=UBERON:0000914!3.21e-20!83;UBERON:0002329!3.21e-20!83;UBERON:0003077!3.21e-20!83;UBERON:0003059!3.21e-20!83;UBERON:0007282!3.21e-20!83;UBERON:0009618!3.21e-20!83;UBERON:0007285!3.21e-20!83;UBERON:0004290!9.04e-19!70;UBERON:0002385!7.55e-16!63;UBERON:0001015!7.55e-16!63;UBERON:0000383!7.55e-16!63;UBERON:0000486!2.90e-15!82;UBERON:0001134!4.49e-15!61;UBERON:0002036!4.49e-15!61;UBERON:0003082!4.49e-15!61;UBERON:0002199!2.23e-12!45;UBERON:0002416!2.23e-12!45;UBERON:0005256!3.82e-12!143;UBERON:0003102!1.07e-11!95;UBERON:0002097!2.78e-10!40;UBERON:0002384!2.45e-09!375;UBERON:0002100!1.28e-08!216;UBERON:0000475!9.92e-08!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.69e-09;31!UBERON:0001015;1.69e-09;31!UBERON:0000383;1.69e-09;31!UBERON:0002199;6.90e-09;46!UBERON:0002416;6.90e-09;46!UBERON:0004905;9.69e-09;8!UBERON:0000982;9.69e-09;8!UBERON:0004770;9.69e-09;8!UBERON:0002204;1.01e-08;70!UBERON:0011135;6.31e-08;5!UBERON:0002216;6.31e-08;5!UBERON:0011134;6.31e-08;5!UBERON:0002209;6.31e-08;5!UBERON:0002213;6.31e-08;5!UBERON:0007844;6.31e-08;5!UBERON:0011138;6.31e-08;5!UBERON:0001130;6.31e-08;5!UBERON:0001066;6.31e-08;5!UBERON:0001468;6.31e-08;5!UBERON:0001134;7.39e-08;16!UBERON:0002036;7.39e-08;16!UBERON:0002097;1.65e-07;41!UBERON:0001013;4.93e-07;14!UBERON:0002384;5.71e-07;198 | |ontology_enrichment_uberon_v019=UBERON:0002385;1.69e-09;31!UBERON:0001015;1.69e-09;31!UBERON:0000383;1.69e-09;31!UBERON:0002199;6.90e-09;46!UBERON:0002416;6.90e-09;46!UBERON:0004905;9.69e-09;8!UBERON:0000982;9.69e-09;8!UBERON:0004770;9.69e-09;8!UBERON:0002204;1.01e-08;70!UBERON:0011135;6.31e-08;5!UBERON:0002216;6.31e-08;5!UBERON:0011134;6.31e-08;5!UBERON:0002209;6.31e-08;5!UBERON:0002213;6.31e-08;5!UBERON:0007844;6.31e-08;5!UBERON:0011138;6.31e-08;5!UBERON:0001130;6.31e-08;5!UBERON:0001066;6.31e-08;5!UBERON:0001468;6.31e-08;5!UBERON:0001134;7.39e-08;16!UBERON:0002036;7.39e-08;16!UBERON:0002097;1.65e-07;41!UBERON:0001013;4.93e-07;14!UBERON:0002384;5.71e-07;198 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.70e-13,371;UBERON:0002199,3.30e-12,46;UBERON:0002416,3.30e-12,46;UBERON:0007524,3.80e-11,73;UBERON:0002329,7.64e-11,71;UBERON:0003059,7.64e-11,71;UBERON:0007282,7.64e-11,71;UBERON:0004290,7.64e-11,71;UBERON:0009618,7.64e-11,71;UBERON:0003102,1.02e-10,99;UBERON:0003077,1.42e-10,72;UBERON:0007285,1.42e-10,72;UBERON:0000486,1.37e-09,83;UBERON:0002097,3.14e-09,41;UBERON:0007503,4.09e-09,78;UBERON:0002385,4.49e-09,64;UBERON:0001015,4.49e-09,64;UBERON:0000383,4.49e-09,64;UBERON:0003104,8.01e-09,160;UBERON:0009142,8.01e-09,160;UBERON:0004905,9.48e-09,8;UBERON:0000982,9.48e-09,8;UBERON:0004770,9.48e-09,8;UBERON:0001134,1.04e-08,62;UBERON:0002036,1.04e-08,62;UBERON:0003082,1.04e-08,62;UBERON:0011135,3.86e-08,5;UBERON:0002216,3.86e-08,5;UBERON:0011134,3.86e-08,5;UBERON:0002209,3.86e-08,5;UBERON:0002213,3.86e-08,5;UBERON:0005856,3.86e-08,5;UBERON:0005866,3.86e-08,5;UBERON:0005863,3.86e-08,5;UBERON:0007844,3.86e-08,5;UBERON:0011138,3.86e-08,5;UBERON:0001130,3.86e-08,5;UBERON:0001066,3.86e-08,5;UBERON:0001468,3.86e-08,5;UBERON:0000926,9.22e-08,315;UBERON:0004120,9.22e-08,315;UBERON:0006603,9.22e-08,315;UBERON:0005256,1.70e-07,122;UBERON:0001013,5.22e-07,14 | |||
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| ||
|short_description=p9@COL6A3 | |short_description=p9@COL6A3 | ||
}} | }} |
Revision as of 19:48, 19 November 2012
Short description: | p9@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 99bp_to_AB209636_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | Q59F25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.93e-18 | 427 |
fibroblast | 2.88e-18 | 76 |
somatic stem cell | 9.49e-18 | 433 |
stem cell | 7.38e-17 | 441 |
connective tissue cell | 6.61e-14 | 361 |
cell of skeletal muscle | 1.76e-11 | 9 |
mesenchymal cell | 1.71e-10 | 354 |
muscle precursor cell | 8.50e-10 | 58 |
myoblast | 8.50e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.50e-10 | 58 |
skin fibroblast | 1.41e-09 | 23 |
muscle cell | 5.52e-09 | 55 |
mesenchymal stem cell of adipose | 1.83e-08 | 8 |
motile cell | 4.63e-08 | 386 |
fibroblast of gingiva | 1.48e-07 | 5 |
electrically responsive cell | 1.79e-07 | 61 |
electrically active cell | 1.79e-07 | 61 |
stromal cell | 3.55e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.90e-08 | 5 |
myotonic disease | 4.90e-08 | 5 |
muscle tissue disease | 4.90e-08 | 5 |
myopathy | 4.90e-08 | 5 |
muscular disease | 4.90e-08 | 5 |
myotonic dystrophy | 4.90e-08 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.