FFCP PHASE1:Mm9::chr16:15594602..15594624,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100503412,70620|HGNC=|MCL_coexpression_id=60|UniProt=Q9D2M8,Q4VBX4,B7ZBY6,Q9CZY3|association_with_transcript=0bp_to_ENSMUST00000115777,NM_001159351,NM_023585,uc007yhp.2,uc007yhq.2_5end|description=CAGE_peak_1_at_Gm6565_5end,CAGE_peak_1_at_Ube2v2_5end|id=chr16:15594602..15594624,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.16e-11!63;UBERON:0002346!5.69e-10!71;UBERON:0003075!5.69e-10!71;UBERON:0007284!5.69e-10!71;UBERON:0004121!2.30e-09!102;UBERON:0000924!2.30e-09!102;UBERON:0006601!2.30e-09!102;UBERON:0000073!3.09e-09!75;UBERON:0001016!3.09e-09!75;UBERON:0001049!4.25e-09!52;UBERON:0005068!4.25e-09!52;UBERON:0006241!4.25e-09!52;UBERON:0007135!4.25e-09!52;UBERON:0002020!6.01e-09!34;UBERON:0000955!1.09e-08!50;UBERON:0006238!1.09e-08!50;UBERON:0001017!1.72e-08!73;UBERON:0005743!1.72e-08!73;UBERON:0002616!2.67e-08!49;UBERON:0003056!3.62e-08!49;UBERON:0000153!9.90e-08!94;UBERON:0007811!1.15e-07!86;UBERON:0002791!3.77e-07!29;UBERON:0003528!3.77e-07!29;UBERON:0001893!3.77e-07!29;UBERON:0002021!4.60e-07!10;UBERON:0000411!4.60e-07!10;UBERON:0001950!4.60e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-11,64;UBERON:0003075,1.39e-11,64;UBERON:0007284,1.39e-11,64;UBERON:0010371,1.89e-11,73;UBERON:0004121,1.01e-10,95;UBERON:0000924,1.01e-10,95;UBERON:0006601,1.01e-10,95;UBERON:0000073,3.32e-10,54;UBERON:0001016,1.40e-09,75;UBERON:0001049,3.04e-09,52;UBERON:0005068,3.04e-09,52;UBERON:0006241,3.04e-09,52;UBERON:0007135,3.04e-09,52;UBERON:0002020,5.86e-09,34;UBERON:0001017,8.10e-09,73;UBERON:0003056,3.08e-08,49;UBERON:0000955,2.00e-07,47;UBERON:0006238,2.00e-07,47;UBERON:0003528,3.75e-07,29;UBERON:0002791,3.75e-07,29;UBERON:0001893,3.75e-07,29;UBERON:0002021,4.23e-07,10;UBERON:0000411,4.23e-07,10;UBERON:0001950,4.23e-07,10;UBERON:0002616,4.68e-07,46|phase1_expression=3.36312578920067,2.09385244583617,1.81999695755814,0.30246421130683,0.500895729946347,0.671517087647559,0.233612640595526,0.387369970324729,0.985521055061667,1.17032263160997,4.79410311031414,3.82906363177615,0.513602189793617,0.524522414513984,0.666219523631325,2.63217847606774,1.39912375625629,0.473193248037357,0.685572168028694,1.69755860719212,4.25216450755349,1.29078236561151,2.87319768052829,1.75991665072747,1.37645568640302,2.29692785646008,0.430761996159075,1.50829862880122,0.570070258369122,0.756090389279792,0.886922042621219,2.54012269383853,0.61506478758457,15.8481681015439,0.866554859253824,1.49611180822643,1.02084678131185,0,0,1.0470474879476,0.588231488031014,0,0.485510353031154,3.02152363141385,2.73717714292689,3.30384153891027,1.56478268869608,0.218025156380447,0.659058548203415,1.94429899074283,1.39986421625363,0,1.00669563634642,0,0.336093799142464,3.60163210450326,1.43266719969378,2.06268836910977,2.42779753031517,1.05798195854407,1.90149421051854,0.677689064138264,0,0,0,0,0,0.384218305321555,2.38486108309499,0.540023753326763,1.05162480675691,3.71346279724945,2.87129103237098,3.1847607795888,1.62937300731002,1.83843757322004,5.50579404996943,8.55505165170758,9.67721159514334,2.2420668914133,2.74462930807229,3.12548022334056,5.862842979029,11.2552522006336,5.80633341551878,5.30331453852602,9.11178757114259,4.47358669980721,7.19398836665249,3.92972112555285,0.579728977403356,0,1.3599426674155,2.15881276655127,3.89865850468601,1.79210754838934,2.10666630197628,7.49893419343454,8.05336614268893,4.59341446863442,2.95771181531029,2.56652954828636,2.54805239706646,0,1.29894624606728,1.77351905832569,3.53867111510348,2.05530983494308,1.55362730188303,1.63286352971307,2.94925055502431,2.13125834818499,1.15307748628029,1.95939432718409,1.64624189989987,1.13099932196708,0.741584903203122,1.44599356919912,0.884610551949874,2.42650274921114,1.54589062922275,1.45462575940567,1.86391761218122,3.80615036115011,3.77004072264219,0.766371165625774,2.27648736561249,2.99951365496704,3.43089613097275,7.48953197024113,4.57500602818627,5.15182843662744,8.8650403298061,7.16003280524926,7.2725815595846,8.27430441645564,1.93494791315601,0.248813941220186,2.0217820674694,2.73574412652416,3.12289063110489,4.13823787980251,2.52086981727489,4.37043971723574,2.72145996605311,3.97152532883034,3.46696380870997,2.84573707812917,2.37124792226126,3.02569728268511,1.93546236580344,1.97276159184817,2.22437799380478,2.089512999133,3.08673204611915,3.18454826909589,3.51106593656617,4.88961023517959,1.42081749697796,2.27838349789052,2.34526059981096,1.62055855314913,1.65721314909647,0.590292695242212,1.23413690309903,1.39520366850245,1.60964040839772,0.817357396570186,1.31647879930784,1.31333971263276,0.972825714550269,1.60819986167866,0.878200461164203,0.536825675041487,5.67782861123144,6.48299057989492,0.330418782983798,1.05780226665418,4.26576501070468,2.78684006232526,4.25262622362908,1.00841762311671,1.77902435075896,0.951128130562796,0.474529061544512,1.64698954724011,1.25667604400135,0.795825888164603,1.169784522714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| ||
|EntrezGene=100503412,70620 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q9D2M8,Q4VBX4,B7ZBY6,Q9CZY3 | |||
|association_with_transcript=0bp_to_ENSMUST00000115777,NM_001159351,NM_023585,uc007yhp.2,uc007yhq.2_5end | |||
|description=CAGE_peak_1_at_Gm6565_5end,CAGE_peak_1_at_Ube2v2_5end | |||
|id=chr16:15594602..15594624,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.16e-11!63;UBERON:0002346!5.69e-10!71;UBERON:0003075!5.69e-10!71;UBERON:0007284!5.69e-10!71;UBERON:0004121!2.30e-09!102;UBERON:0000924!2.30e-09!102;UBERON:0006601!2.30e-09!102;UBERON:0000073!3.09e-09!75;UBERON:0001016!3.09e-09!75;UBERON:0001049!4.25e-09!52;UBERON:0005068!4.25e-09!52;UBERON:0006241!4.25e-09!52;UBERON:0007135!4.25e-09!52;UBERON:0002020!6.01e-09!34;UBERON:0000955!1.09e-08!50;UBERON:0006238!1.09e-08!50;UBERON:0001017!1.72e-08!73;UBERON:0005743!1.72e-08!73;UBERON:0002616!2.67e-08!49;UBERON:0003056!3.62e-08!49;UBERON:0000153!9.90e-08!94;UBERON:0007811!1.15e-07!86;UBERON:0002791!3.77e-07!29;UBERON:0003528!3.77e-07!29;UBERON:0001893!3.77e-07!29;UBERON:0002021!4.60e-07!10;UBERON:0000411!4.60e-07!10;UBERON:0001950!4.60e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-11,64;UBERON:0003075,1.39e-11,64;UBERON:0007284,1.39e-11,64;UBERON:0010371,1.89e-11,73;UBERON:0004121,1.01e-10,95;UBERON:0000924,1.01e-10,95;UBERON:0006601,1.01e-10,95;UBERON:0000073,3.32e-10,54;UBERON:0001016,1.40e-09,75;UBERON:0001049,3.04e-09,52;UBERON:0005068,3.04e-09,52;UBERON:0006241,3.04e-09,52;UBERON:0007135,3.04e-09,52;UBERON:0002020,5.86e-09,34;UBERON:0001017,8.10e-09,73;UBERON:0003056,3.08e-08,49;UBERON:0000955,2.00e-07,47;UBERON:0006238,2.00e-07,47;UBERON:0003528,3.75e-07,29;UBERON:0002791,3.75e-07,29;UBERON:0001893,3.75e-07,29;UBERON:0002021,4.23e-07,10;UBERON:0000411,4.23e-07,10;UBERON:0001950,4.23e-07,10;UBERON:0002616,4.68e-07,46 | |||
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| |||
|short_description=p1@Gm6565,p1@Ube2v2 | |||
}} |
Revision as of 12:01, 13 September 2013
Short description: | p1@Gm6565, p1@Ube2v2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm6565_5end, CAGE_peak_1_at_Ube2v2_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000115777, NM_001159351, NM_023585, uc007yhp.2, uc007yhq.2_5end |
EntrezGene: | 100503412,70620 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.39e-11 | 64 |
neural plate | 1.39e-11 | 64 |
presumptive neural plate | 1.39e-11 | 64 |
ecto-epithelium | 1.89e-11 | 73 |
ectoderm-derived structure | 1.01e-10 | 95 |
ectoderm | 1.01e-10 | 95 |
presumptive ectoderm | 1.01e-10 | 95 |
regional part of nervous system | 3.32e-10 | 54 |
nervous system | 1.40e-09 | 75 |
neural tube | 3.04e-09 | 52 |
neural rod | 3.04e-09 | 52 |
future spinal cord | 3.04e-09 | 52 |
neural keel | 3.04e-09 | 52 |
gray matter | 5.86e-09 | 34 |
central nervous system | 8.10e-09 | 73 |
pre-chordal neural plate | 3.08e-08 | 49 |
brain | 2.00e-07 | 47 |
future brain | 2.00e-07 | 47 |
brain grey matter | 3.75e-07 | 29 |
regional part of telencephalon | 3.75e-07 | 29 |
telencephalon | 3.75e-07 | 29 |
occipital lobe | 4.23e-07 | 10 |
visual cortex | 4.23e-07 | 10 |
neocortex | 4.23e-07 | 10 |
regional part of brain | 4.68e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.