FFCP PHASE1:Mm9::chr12:114067236..114067317,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71963|HGNC=|UniProt=Q9CWM2|association_with_transcript=282bp_to_ENSMUST00000062092,NM_028023,uc007pfi.1_5end|description=CAGE_peak_2_at_Cdca4_5end|id=chr12:114067236..114067317,-|ontology_enrichment_celltype=CL:0000988!2.75e-12!32;CL:0002032!2.75e-12!32;CL:0000037!2.75e-12!32;CL:0000566!2.75e-12!32;CL:0000837!2.75e-12!32;CL:0000219!6.53e-12!54;CL:0002320!4.13e-11!46;CL:0000134!4.13e-11!46;CL:0002031!4.89e-09!25;CL:0000838!2.15e-08!12;CL:0000542!2.47e-08!13;CL:0000051!2.47e-08!13;CL:0000738!6.88e-08!17;CL:0002087!6.88e-08!17;CL:0000084!8.36e-08!11;CL:0000827!8.36e-08!11;CL:0000791!8.03e-07!9;CL:0000789!8.03e-07!9;CL:0002420!8.03e-07!9;CL:0002419!8.03e-07!9;CL:0000790!8.03e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,2.75e-12,32;CL:0002032,2.75e-12,32;CL:0000037,2.75e-12,32;CL:0000837,2.75e-12,32;CL:0000219,6.64e-12,54;CL:0002320,4.21e-11,46;CL:0000134,4.21e-11,46;CL:0002031,4.89e-09,25;CL:0000838,2.15e-08,12;CL:0000542,2.47e-08,13;CL:0000051,2.47e-08,13;CL:0000738,6.88e-08,17;CL:0002087,6.88e-08,17;CL:0000084,8.36e-08,11;CL:0000827,8.36e-08,11;CL:0000791,8.03e-07,9;CL:0000789,8.03e-07,9;CL:0002420,8.03e-07,9;CL:0002419,8.03e-07,9;CL:0000790,8.03e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.40e-12!45;UBERON:0003061!3.40e-12!45;UBERON:0002193!4.92e-12!48;UBERON:0002384!4.13e-11!46;UBERON:0003081!8.46e-10!88;UBERON:0000072!1.47e-09!27;UBERON:0004177!3.44e-09!29;UBERON:0000065!3.93e-09!41;UBERON:0001004!1.46e-08!42;UBERON:0006562!4.03e-08!24;UBERON:0001557!4.03e-08!24;UBERON:0001042!4.03e-08!24;UBERON:0008814!4.03e-08!24;UBERON:0009145!4.03e-08!24;UBERON:0002370!5.01e-08!23;UBERON:0000974!5.01e-08!23;UBERON:0004807!5.01e-08!23;UBERON:0005058!5.01e-08!23;UBERON:0003351!5.01e-08!23;UBERON:0009113!5.01e-08!23;UBERON:0003295!5.01e-08!23;UBERON:0009722!5.01e-08!23;UBERON:0005562!5.01e-08!23;UBERON:0007690!5.01e-08!23;UBERON:0000926!6.35e-08!193;UBERON:0004120!6.35e-08!193;UBERON:0006603!6.35e-08!193;UBERON:0003408!2.73e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.33e-12,45;UBERON:0003061,3.33e-12,45;UBERON:0002193,4.83e-12,48;UBERON:0002405,4.83e-12,48;UBERON:0002384,4.21e-11,46;UBERON:0000072,1.44e-09,27;UBERON:0003081,2.20e-09,87;UBERON:0004177,3.37e-09,29;UBERON:0005057,3.37e-09,29;UBERON:0000065,3.87e-09,41;UBERON:0001004,1.44e-08,42;UBERON:0000926,2.33e-08,120;UBERON:0004120,2.33e-08,120;UBERON:0006603,2.33e-08,120;UBERON:0006562,3.95e-08,24;UBERON:0001557,3.95e-08,24;UBERON:0001042,3.95e-08,24;UBERON:0008814,3.95e-08,24;UBERON:0009145,3.95e-08,24;UBERON:0002370,4.90e-08,23;UBERON:0000974,4.90e-08,23;UBERON:0004807,4.90e-08,23;UBERON:0005058,4.90e-08,23;UBERON:0003351,4.90e-08,23;UBERON:0009113,4.90e-08,23;UBERON:0003295,4.90e-08,23;UBERON:0009722,4.90e-08,23;UBERON:0005562,4.90e-08,23;UBERON:0007690,4.90e-08,23;UBERON:0000077,4.96e-08,35;UBERON:0003408,2.67e-07,24|phase1_expression=11.2104192973356,4.88565570695105,3.63999391511629,1.81478526784098,2.50447864973174,6.04365378882803,8.41005506143892,38.4787503855897,47.5865880872634,39.0887758957729,33.3875038039735,30.9515976901905,30.1313284678922,37.0662506256549,7.99463428357591,9.51633756732182,6.29605690315332,21.6091583270393,26.8744289867248,25.4633791078818,5.01755411891312,31.7731043842833,20.112383763698,7.03966660290989,10.782236210157,6.89078356938024,8.61523992318149,9.48073423817912,6.65081968097309,7.81293402255785,13.5255611499736,40.6419631014164,64.5818026963799,15.8481681015439,8.37669697278696,11.470190529736,7.9626048942324,15.0671387065287,21.8773896466664,14.6586648312664,6.47054636834116,14.3439551841274,16.0218416500281,18.1291417884831,19.6671246565858,12.114085642671,20.342174953049,10.247182349881,10.9843091367236,10.1103547518627,16.6583841734181,11.5002051491977,29.5297386661616,20.3101399763176,21.1739093459752,28.8130568360261,13.4670716771216,14.4388185837684,2.22548106945558,2.64495489636016,5.07065122804943,30.1571633541528,15.1180115338894,23.8473425079571,30.6548572395762,26.2877642530057,17.6764065205859,12.2949857702897,6.84351441235953,5.67024940993101,4.41682418837902,3.99911378165325,1.98781686856452,4.5321595709533,5.84657373211242,5.51531271966013,0,3.31987079021488,1.99688493233117,4.08847491963601,3.84248103130121,2.08365348222704,1.67509799400829,2.25105044012672,1.68078072554491,1.47314292736834,3.13217697758026,2.05039390407831,13.2520838333072,15.0387404612503,7.24661221754194,1.72084775396277,16.9992833426938,0.539703191637817,0.649776417447669,2.68816132258401,5.33688796500657,20.4516387093669,15.3273742715693,12.7202246823722,8.59144860637751,7.69958864485907,7.64415719119937,0,23.8140145112336,23.8158273546593,23.25412447068,5.59501010623394,25.63485048107,6.53145411885229,12.6644288539279,10.0473607843007,7.84092690670599,7.38540938707851,12.6995803706561,7.28866229712118,9.14621380617183,5.35017620603673,7.96149496754887,11.1619126463712,9.05450225687614,11.1521308221101,9.31958806090611,2.342246376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| ||
|EntrezGene=71963 | |||
|HGNC= | |||
|UniProt=Q9CWM2 | |||
|association_with_transcript=282bp_to_ENSMUST00000062092,NM_028023,uc007pfi.1_5end | |||
|description=CAGE_peak_2_at_Cdca4_5end | |||
|id=chr12:114067236..114067317,- | |||
|ontology_enrichment_celltype=CL:0000988!2.75e-12!32;CL:0002032!2.75e-12!32;CL:0000037!2.75e-12!32;CL:0000566!2.75e-12!32;CL:0000837!2.75e-12!32;CL:0000219!6.53e-12!54;CL:0002320!4.13e-11!46;CL:0000134!4.13e-11!46;CL:0002031!4.89e-09!25;CL:0000838!2.15e-08!12;CL:0000542!2.47e-08!13;CL:0000051!2.47e-08!13;CL:0000738!6.88e-08!17;CL:0002087!6.88e-08!17;CL:0000084!8.36e-08!11;CL:0000827!8.36e-08!11;CL:0000791!8.03e-07!9;CL:0000789!8.03e-07!9;CL:0002420!8.03e-07!9;CL:0002419!8.03e-07!9;CL:0000790!8.03e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.75e-12,32;CL:0002032,2.75e-12,32;CL:0000037,2.75e-12,32;CL:0000837,2.75e-12,32;CL:0000219,6.64e-12,54;CL:0002320,4.21e-11,46;CL:0000134,4.21e-11,46;CL:0002031,4.89e-09,25;CL:0000838,2.15e-08,12;CL:0000542,2.47e-08,13;CL:0000051,2.47e-08,13;CL:0000738,6.88e-08,17;CL:0002087,6.88e-08,17;CL:0000084,8.36e-08,11;CL:0000827,8.36e-08,11;CL:0000791,8.03e-07,9;CL:0000789,8.03e-07,9;CL:0002420,8.03e-07,9;CL:0002419,8.03e-07,9;CL:0000790,8.03e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.40e-12!45;UBERON:0003061!3.40e-12!45;UBERON:0002193!4.92e-12!48;UBERON:0002384!4.13e-11!46;UBERON:0003081!8.46e-10!88;UBERON:0000072!1.47e-09!27;UBERON:0004177!3.44e-09!29;UBERON:0000065!3.93e-09!41;UBERON:0001004!1.46e-08!42;UBERON:0006562!4.03e-08!24;UBERON:0001557!4.03e-08!24;UBERON:0001042!4.03e-08!24;UBERON:0008814!4.03e-08!24;UBERON:0009145!4.03e-08!24;UBERON:0002370!5.01e-08!23;UBERON:0000974!5.01e-08!23;UBERON:0004807!5.01e-08!23;UBERON:0005058!5.01e-08!23;UBERON:0003351!5.01e-08!23;UBERON:0009113!5.01e-08!23;UBERON:0003295!5.01e-08!23;UBERON:0009722!5.01e-08!23;UBERON:0005562!5.01e-08!23;UBERON:0007690!5.01e-08!23;UBERON:0000926!6.35e-08!193;UBERON:0004120!6.35e-08!193;UBERON:0006603!6.35e-08!193;UBERON:0003408!2.73e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.33e-12,45;UBERON:0003061,3.33e-12,45;UBERON:0002193,4.83e-12,48;UBERON:0002405,4.83e-12,48;UBERON:0002384,4.21e-11,46;UBERON:0000072,1.44e-09,27;UBERON:0003081,2.20e-09,87;UBERON:0004177,3.37e-09,29;UBERON:0005057,3.37e-09,29;UBERON:0000065,3.87e-09,41;UBERON:0001004,1.44e-08,42;UBERON:0000926,2.33e-08,120;UBERON:0004120,2.33e-08,120;UBERON:0006603,2.33e-08,120;UBERON:0006562,3.95e-08,24;UBERON:0001557,3.95e-08,24;UBERON:0001042,3.95e-08,24;UBERON:0008814,3.95e-08,24;UBERON:0009145,3.95e-08,24;UBERON:0002370,4.90e-08,23;UBERON:0000974,4.90e-08,23;UBERON:0004807,4.90e-08,23;UBERON:0005058,4.90e-08,23;UBERON:0003351,4.90e-08,23;UBERON:0009113,4.90e-08,23;UBERON:0003295,4.90e-08,23;UBERON:0009722,4.90e-08,23;UBERON:0005562,4.90e-08,23;UBERON:0007690,4.90e-08,23;UBERON:0000077,4.96e-08,35;UBERON:0003408,2.67e-07,24 | |||
|phase1_expression=11.2104192973356,4.88565570695105,3.63999391511629,1.81478526784098,2.50447864973174,6.04365378882803,8.41005506143892,38.4787503855897,47.5865880872634,39.0887758957729,33.3875038039735,30.9515976901905,30.1313284678922,37.0662506256549,7.99463428357591,9.51633756732182,6.29605690315332,21.6091583270393,26.8744289867248,25.4633791078818,5.01755411891312,31.7731043842833,20.112383763698,7.03966660290989,10.782236210157,6.89078356938024,8.61523992318149,9.48073423817912,6.65081968097309,7.81293402255785,13.5255611499736,40.6419631014164,64.5818026963799,15.8481681015439,8.37669697278696,11.470190529736,7.9626048942324,15.0671387065287,21.8773896466664,14.6586648312664,6.47054636834116,14.3439551841274,16.0218416500281,18.1291417884831,19.6671246565858,12.114085642671,20.342174953049,10.247182349881,10.9843091367236,10.1103547518627,16.6583841734181,11.5002051491977,29.5297386661616,20.3101399763176,21.1739093459752,28.8130568360261,13.4670716771216,14.4388185837684,2.22548106945558,2.64495489636016,5.07065122804943,30.1571633541528,15.1180115338894,23.8473425079571,30.6548572395762,26.2877642530057,17.6764065205859,12.2949857702897,6.84351441235953,5.67024940993101,4.41682418837902,3.99911378165325,1.98781686856452,4.5321595709533,5.84657373211242,5.51531271966013,0,3.31987079021488,1.99688493233117,4.08847491963601,3.84248103130121,2.08365348222704,1.67509799400829,2.25105044012672,1.68078072554491,1.47314292736834,3.13217697758026,2.05039390407831,13.2520838333072,15.0387404612503,7.24661221754194,1.72084775396277,16.9992833426938,0.539703191637817,0.649776417447669,2.68816132258401,5.33688796500657,20.4516387093669,15.3273742715693,12.7202246823722,8.59144860637751,7.69958864485907,7.64415719119937,0,23.8140145112336,23.8158273546593,23.25412447068,5.59501010623394,25.63485048107,6.53145411885229,12.6644288539279,10.0473607843007,7.84092690670599,7.38540938707851,12.6995803706561,7.28866229712118,9.14621380617183,5.35017620603673,7.96149496754887,11.1619126463712,9.05450225687614,11.1521308221101,9.31958806090611,2.34224637609238,2.51336048176146,6.38642638021478,35.9445373517761,26.9956228947033,30.7509949516817,2.69623150928681,0.457500602818626,2.26177833803156,3.47648640384553,4.34716277461562,1.87009240103604,4.38051410282946,17.3126918545538,13.9335807083304,9.35074206204597,2.31486041475121,12.4915625244196,8.73627996847197,7.92273371143537,11.4535661555143,14.0155188251735,10.249097622788,9.93238280333126,2.32833033665114,10.3472636607764,11.1572587299013,9.50136070485324,14.6861140726475,10.5657954705727,21.5916343243743,14.1989674121481,10.7478504081986,28.0885274925294,19.3010930336036,21.8805894534606,12.8417978972011,8.91199027928165,12.604344302271,12.3107262504309,12.0026181365916,8.79322543458056,9.53389173476672,9.92611585178591,8.75740067753771,10.2027106946358,10.342550236983,5.43161023957233,5.11699955988663,7.02560368931362,7.24714661306008,2.94405927989778,3.70456604565424,6.27795687669216,6.87571473325215,12.797295032114,10.4506502337197,13.0156135935314,9.07575860805041,8.45036566610507,6.65789691393957,9.49058123089023,8.39964669092456,10.5560787696113,7.95825888164603,7.79856348476481,9.88701349519644,7.78096979548899,9.16049856970089,16.8804431848243,13.8240700257772,23.6686244913469,10.386217720111,12.0250542043928,11.4321386421219,6.45012678667424,4.28069429140846,6.43694784149637,3.57851775373222,2.96452627087149,7.17433954579204,10.614185736113,9.89393294493356,7.70868461276311,12.3000351473733,8.14802725700543,12.3709339103849,8.10676133875177,9.33508804839477,10.0637744569148,10.7920874823866,10.6092808858951,5.80931419278357,4.66433275156972,2.8946611281802,8.86815312799702,10.8010104709176,12.711268162478,16.2955282344181,15.2548661387526,14.573044397438,11.4260947625287,13.8544889979037,13.7142575372386,11.0732344824387,9.56728611944923,9.5040722535128,9.67035898449015,9.40218880779825,6.03165135757089,19.0366989336548,7.86822836830458,14.6246475541508,0.80275294993896,1.64096361229084,33.1148589660884,5.55436039849621,11.6738041184015,9.37052986311932,12.0637102730367,13.3822526853429,15.1503098376028,13.587673477864,17.4068601720205,14.3205370376543,10.2774822266096,1.60660658210904,8.80028528291265,15.6697731227185,20.5237568785506,8.41347627159931,5.30980553359851,14.3240575331439,13.6045600634138,8.29862350925952,9.44966057218473,6.45613810682248,10.5955600198971,7.99774204850512,9.62542921638748,8.53299246426703,4.21674434299995,10.3135543248187,8.85142974959849,11.1637878299412,9.31382523235832,10.9311887866112,7.09360934569094,9.45354733290974,10.3665882979336,15.8321773539592,11.7335854031855,12.0744280392378,9.2621927183084,15.4993077764991,18.0840157899414,21.8935917489206,24.471330520643,24.128712262524,7.86998258900597,2.22510362412612,14.1822831062218,16.5109494370578,15.7415348264255,14.3160027323565,12.4391747226133,13.7266903923914,26.5166350790414,34.7079601762672,38.143192770021,18.1387417422872,14.2351197111511,11.7925290933572,13.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| |||
|short_description=p2@Cdca4 | |||
}} |
Revision as of 22:23, 12 September 2013
Short description: | p2@Cdca4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cdca4_5end |
Coexpression cluster: | NA |
Association with transcript: | 282bp_to_ENSMUST00000062092, NM_028023, uc007pfi.1_5end |
EntrezGene: | Cdca4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.75e-12 | 32 |
hematopoietic oligopotent progenitor cell | 2.75e-12 | 32 |
hematopoietic stem cell | 2.75e-12 | 32 |
hematopoietic multipotent progenitor cell | 2.75e-12 | 32 |
motile cell | 6.64e-12 | 54 |
connective tissue cell | 4.21e-11 | 46 |
mesenchymal cell | 4.21e-11 | 46 |
hematopoietic lineage restricted progenitor cell | 4.89e-09 | 25 |
lymphoid lineage restricted progenitor cell | 2.15e-08 | 12 |
lymphocyte | 2.47e-08 | 13 |
common lymphoid progenitor | 2.47e-08 | 13 |
leukocyte | 6.88e-08 | 17 |
nongranular leukocyte | 6.88e-08 | 17 |
T cell | 8.36e-08 | 11 |
pro-T cell | 8.36e-08 | 11 |
mature alpha-beta T cell | 8.03e-07 | 9 |
alpha-beta T cell | 8.03e-07 | 9 |
immature T cell | 8.03e-07 | 9 |
mature T cell | 8.03e-07 | 9 |
immature alpha-beta T cell | 8.03e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.33e-12 | 45 |
blood island | 3.33e-12 | 45 |
hemolymphoid system | 4.83e-12 | 48 |
immune system | 4.83e-12 | 48 |
connective tissue | 4.21e-11 | 46 |
segment of respiratory tract | 1.44e-09 | 27 |
lateral plate mesoderm | 2.20e-09 | 87 |
hemopoietic organ | 3.37e-09 | 29 |
immune organ | 3.37e-09 | 29 |
respiratory tract | 3.87e-09 | 41 |
respiratory system | 1.44e-08 | 42 |
mesoderm | 2.33e-08 | 120 |
mesoderm-derived structure | 2.33e-08 | 120 |
presumptive mesoderm | 2.33e-08 | 120 |
pharynx | 3.95e-08 | 24 |
upper respiratory tract | 3.95e-08 | 24 |
chordate pharynx | 3.95e-08 | 24 |
pharyngeal arch system | 3.95e-08 | 24 |
pharyngeal region of foregut | 3.95e-08 | 24 |
thymus | 4.90e-08 | 23 |
neck | 4.90e-08 | 23 |
respiratory system epithelium | 4.90e-08 | 23 |
hemolymphoid system gland | 4.90e-08 | 23 |
pharyngeal epithelium | 4.90e-08 | 23 |
thymic region | 4.90e-08 | 23 |
pharyngeal gland | 4.90e-08 | 23 |
entire pharyngeal arch endoderm | 4.90e-08 | 23 |
thymus primordium | 4.90e-08 | 23 |
early pharyngeal endoderm | 4.90e-08 | 23 |
mixed endoderm/mesoderm-derived structure | 4.96e-08 | 35 |
gland of gut | 2.67e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.