FFCP PHASE1:Mm9::chr13:108948778..108948824,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=75597|HGNC=|MCL_coexpression_id=2813|UniProt=Q59J78|association_with_transcript=0bp_to_ENSMUST00000022206,ENSMUST00000163558,NM_001127346,uc007ruu.2,uc007ruv.2,uc011zek.1_5end|description=CAGE_peak_1_at_Ndufaf2_5end|id=chr13:108948778..108948824,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!7.65e-11!114;UBERON:0004111!6.14e-09!122;UBERON:0002020!1.33e-08!34;UBERON:0001049!6.85e-08!52;UBERON:0005068!6.85e-08!52;UBERON:0006241!6.85e-08!52;UBERON:0007135!6.85e-08!52;UBERON:0002346!1.33e-07!71;UBERON:0003075!1.33e-07!71;UBERON:0007284!1.33e-07!71;UBERON:0002791!3.67e-07!29;UBERON:0003528!3.67e-07!29;UBERON:0001893!3.67e-07!29;UBERON:0003103!5.11e-07!43|ontology_enrichment_uberon_v019_2=UBERON:0000025,7.65e-11,114;UBERON:0010314,1.39e-10,92;UBERON:0004111,6.14e-09,122;UBERON:0002020,1.33e-08,34;UBERON:0001049,6.85e-08,52;UBERON:0005068,6.85e-08,52;UBERON:0006241,6.85e-08,52;UBERON:0007135,6.85e-08,52;UBERON:0000073,1.09e-07,54;UBERON:0003528,3.67e-07,29;UBERON:0002791,3.67e-07,29;UBERON:0001893,3.67e-07,29;UBERON:0003103,5.11e-07,43;UBERON:0002346,8.64e-07,64;UBERON:0003075,8.64e-07,64;UBERON:0007284,8.64e-07,64|phase1_expression=24.0223270657191,19.1936474201649,16.8349718574128,14.215817931421,13.5241847085514,29.5467518564926,22.1932008565749,11.6210991097419,22.9485617107217,14.0438715793196,36.1269912955816,27.9202556483677,8.21763503669787,11.2772319120507,40.9725007033265,30.1688148410841,16.7894850750755,14.5112596064789,12.614527891728,11.4585205985468,56.1285714997061,20.2553540449806,33.9559725880616,25.1188103785648,17.4351053611049,21.8208146363708,22.3996238002719,21.9780657339607,18.4322716872683,19.6583501212746,34.8116901728828,5.08024538767705,6.1506478758457,0,38.7061170466708,44.218415665359,47.1631212966073,3.76678467663217,5.4693474116666,6.80580867165938,1.76469446409304,4.09827290975067,3.39857247121808,45.9523385610857,41.2604110063424,41.8486594928634,18.7773922643529,22.6746162635664,18.6733255324301,27.2201858703997,20.0180582924268,20.125359011096,13.7581736967344,8.70434570413613,14.1159395639835,36.2735804810685,14.6132054368766,30.9403255366465,43.4980390848135,33.8554226734101,43.1005354384202,20.3306719241479,19.5644855144451,9.44894703145469,8.89979726310277,13.4991221839759,16.4780060785123,19.5951335713993,41.4758449233911,41.9868468211558,55.7361147581162,51.9884791614923,90.7769703311132,51.2011540718508,45.6224442046805,61.5876587028714,35.2370819198044,42.7752582585379,51.1509755743291,43.3905886632338,42.8162172059277,65.6350846901518,64.2120897703176,34.3285192119325,34.5324039975591,51.2653738724182,45.5589378557129,43.9902692147709,24.2323818666189,28.5660497203649,19.1310562543107,33.5565312022741,23.1190253460635,45.3350680975766,92.9180276950167,92.7415656291485,34.1279940920157,49.7656541927929,63.3877851231,66.0745004334336,23.5208511027056,39.7812079984385,76.4415719119937,28.4426681261332,39.6178605050522,41.2976580724411,59.1463600667296,37.7948641870088,20.4560928081266,28.2040064223167,59.8524377343169,60.5886301841161,48.1986389265162,51.8485883501022,30.5730638552832,41.2186419561336,9.39340877390621,52.6341659188478,26.5383165584962,36.0740075382722,23.6300424752621,29.0925151881133,35.4144346314432,45.9665851308129,28.2753054198164,27.8448190177365,30.1934113754919,34.1944556666242,34.1818910826544,67.2559970927654,49.4100651044117,46.9947276902113,51.4519987769138,42.7044813741652,57.7650763875577,48.0234138680563,27.2929495118848,25.1302080632388,26.2831668771022,28.6200924005605,53.2192611717458,36.7843367093557,39.2535442975661,40.0874815443002,23.5406287063594,34.2063633160549,32.0459897994273,25.6116337031625,50.8740463321508,49.9240051643043,44.3396832893151,47.3462782043562,51.7167883559612,32.3874514865615,30.0441919155597,46.5740184355274,53.3682022358058,49.4107981660253,29.8371674365372,52.1956946789465,60.5077234751228,58.3401079133688,38.8261366359745,49.191057936851,57.3873659941047,52.3201375688418,52.849860075725,47.0564329739693,70.9252953127101,61.8911339578189,52.3704509666228,53.5091953976716,60.3762817050389,55.4272509480335,46.4740786326721,53.3045892124693,16.1905203662061,25.3872543997003,59.294133648795,50.6275944655756,38.2736360126617,30.2525286935014,35.3581089713344,27.7729414124336,33.2170343081158,20.5873693405014,21.8661631656234,21.4872989804443,32.1690743746548,32.357498711552,42.1469197255654,32.4600275404619,46.2789678325519,57.2385048174741,45.0830942692322,48.2653646993395,46.7425494073978,34.7172308457077,42.8743721702464,52.8444329766976,54.3215598331157,49.1120712408766,46.8395150797695,44.7144883319132,35.7737371106029,39.1260075549646,33.6747801504915,27.0118418922707,28.0088436959562,38.2635862809578,39.8852657866587,51.0684228529832,54.6319184803947,45.0290546678889,59.9112332379956,55.0621953924704,61.7127102515378,41.0076993158862,21.4313700593261,46.42539588376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| ||
|EntrezGene=75597 | |||
|HGNC= | |||
|MCL_coexpression_id=2813 | |||
|UniProt=Q59J78 | |||
|association_with_transcript=0bp_to_ENSMUST00000022206,ENSMUST00000163558,NM_001127346,uc007ruu.2,uc007ruv.2,uc011zek.1_5end | |||
|description=CAGE_peak_1_at_Ndufaf2_5end | |||
|id=chr13:108948778..108948824,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!7.65e-11!114;UBERON:0004111!6.14e-09!122;UBERON:0002020!1.33e-08!34;UBERON:0001049!6.85e-08!52;UBERON:0005068!6.85e-08!52;UBERON:0006241!6.85e-08!52;UBERON:0007135!6.85e-08!52;UBERON:0002346!1.33e-07!71;UBERON:0003075!1.33e-07!71;UBERON:0007284!1.33e-07!71;UBERON:0002791!3.67e-07!29;UBERON:0003528!3.67e-07!29;UBERON:0001893!3.67e-07!29;UBERON:0003103!5.11e-07!43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,7.65e-11,114;UBERON:0010314,1.39e-10,92;UBERON:0004111,6.14e-09,122;UBERON:0002020,1.33e-08,34;UBERON:0001049,6.85e-08,52;UBERON:0005068,6.85e-08,52;UBERON:0006241,6.85e-08,52;UBERON:0007135,6.85e-08,52;UBERON:0000073,1.09e-07,54;UBERON:0003528,3.67e-07,29;UBERON:0002791,3.67e-07,29;UBERON:0001893,3.67e-07,29;UBERON:0003103,5.11e-07,43;UBERON:0002346,8.64e-07,64;UBERON:0003075,8.64e-07,64;UBERON:0007284,8.64e-07,64 | |||
|phase1_expression=24.0223270657191,19.1936474201649,16.8349718574128,14.215817931421,13.5241847085514,29.5467518564926,22.1932008565749,11.6210991097419,22.9485617107217,14.0438715793196,36.1269912955816,27.9202556483677,8.21763503669787,11.2772319120507,40.9725007033265,30.1688148410841,16.7894850750755,14.5112596064789,12.614527891728,11.4585205985468,56.1285714997061,20.2553540449806,33.9559725880616,25.1188103785648,17.4351053611049,21.8208146363708,22.3996238002719,21.9780657339607,18.4322716872683,19.6583501212746,34.8116901728828,5.08024538767705,6.1506478758457,0,38.7061170466708,44.218415665359,47.1631212966073,3.76678467663217,5.4693474116666,6.80580867165938,1.76469446409304,4.09827290975067,3.39857247121808,45.9523385610857,41.2604110063424,41.8486594928634,18.7773922643529,22.6746162635664,18.6733255324301,27.2201858703997,20.0180582924268,20.125359011096,13.7581736967344,8.70434570413613,14.1159395639835,36.2735804810685,14.6132054368766,30.9403255366465,43.4980390848135,33.8554226734101,43.1005354384202,20.3306719241479,19.5644855144451,9.44894703145469,8.89979726310277,13.4991221839759,16.4780060785123,19.5951335713993,41.4758449233911,41.9868468211558,55.7361147581162,51.9884791614923,90.7769703311132,51.2011540718508,45.6224442046805,61.5876587028714,35.2370819198044,42.7752582585379,51.1509755743291,43.3905886632338,42.8162172059277,65.6350846901518,64.2120897703176,34.3285192119325,34.5324039975591,51.2653738724182,45.5589378557129,43.9902692147709,24.2323818666189,28.5660497203649,19.1310562543107,33.5565312022741,23.1190253460635,45.3350680975766,92.9180276950167,92.7415656291485,34.1279940920157,49.7656541927929,63.3877851231,66.0745004334336,23.5208511027056,39.7812079984385,76.4415719119937,28.4426681261332,39.6178605050522,41.2976580724411,59.1463600667296,37.7948641870088,20.4560928081266,28.2040064223167,59.8524377343169,60.5886301841161,48.1986389265162,51.8485883501022,30.5730638552832,41.2186419561336,9.39340877390621,52.6341659188478,26.5383165584962,36.0740075382722,23.6300424752621,29.0925151881133,35.4144346314432,45.9665851308129,28.2753054198164,27.8448190177365,30.1934113754919,34.1944556666242,34.1818910826544,67.2559970927654,49.4100651044117,46.9947276902113,51.4519987769138,42.7044813741652,57.7650763875577,48.0234138680563,27.2929495118848,25.1302080632388,26.2831668771022,28.6200924005605,53.2192611717458,36.7843367093557,39.2535442975661,40.0874815443002,23.5406287063594,34.2063633160549,32.0459897994273,25.6116337031625,50.8740463321508,49.9240051643043,44.3396832893151,47.3462782043562,51.7167883559612,32.3874514865615,30.0441919155597,46.5740184355274,53.3682022358058,49.4107981660253,29.8371674365372,52.1956946789465,60.5077234751228,58.3401079133688,38.8261366359745,49.191057936851,57.3873659941047,52.3201375688418,52.849860075725,47.0564329739693,70.9252953127101,61.8911339578189,52.3704509666228,53.5091953976716,60.3762817050389,55.4272509480335,46.4740786326721,53.3045892124693,16.1905203662061,25.3872543997003,59.294133648795,50.6275944655756,38.2736360126617,30.2525286935014,35.3581089713344,27.7729414124336,33.2170343081158,20.5873693405014,21.8661631656234,21.4872989804443,32.1690743746548,32.357498711552,42.1469197255654,32.4600275404619,46.2789678325519,57.2385048174741,45.0830942692322,48.2653646993395,46.7425494073978,34.7172308457077,42.8743721702464,52.8444329766976,54.3215598331157,49.1120712408766,46.8395150797695,44.7144883319132,35.7737371106029,39.1260075549646,33.6747801504915,27.0118418922707,28.0088436959562,38.2635862809578,39.8852657866587,51.0684228529832,54.6319184803947,45.0290546678889,59.9112332379956,55.0621953924704,61.7127102515378,41.0076993158862,21.4313700593261,46.4253958837688,50.0302477677019,61.1082308790677,58.6725620721255,28.9785825374341,29.5174114698657,20.0987657293533,32.6304748299815,31.0050565508285,26.9478559031153,27.8567635016755,22.4490476425664,19.5276229085041,24.1266054302836,23.9318500880232,50.1599558479417,31.4567890787395,79.472542043957,93.4177142139859,29.3443552224249,30.8014531189335,35.3369205746207,42.167384384037,34.4677436372478,32.7387253194996,34.7565931568535,31.9876479791381,39.6714487641396,40.9158201075837,35.9711877931336,29.2402397943844,29.3815976381116,27.6001685684246,27.3650091714008,24.4155781999352,23.8941249011933,51.4694948648561,33.5579148230874,54.1296578899428,29.2348873951965,31.9732553861685,26.3596859031586,36.3533729477506,32.7977588113944,32.8678228253249,31.6255825724996,41.2542172992747,31.3204437293485,47.8962510123285,37.7727356645643,37.5089811305287,31.3892213546824,32.1063871683727,28.631529584769,11.8741330154694,26.752574719263,13.7690846061483,31.5355609218596,33.1421368412375,23.896735150994,31.7849114371381,19.8158091045207,22.6514441648185,34.6862195589522,102.540192011812,20.846247457338,42.5156948004238,46.4838263697976,34.0946907178491,26.1085974947158,24.0217081866849,27.7064840889984,27.7103875600843,19.900796227837,45.8241896647254,50.4555909761911,3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| |||
|short_description=p1@Ndufaf2 | |||
}} | |||
Revision as of 23:49, 12 September 2013
| Short description: | p1@Ndufaf2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Ndufaf2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2813 |
| Association with transcript: | 0bp_to_ENSMUST00000022206, ENSMUST00000163558, NM_001127346, uc007ruu.2, uc007ruv.2, uc011zek.1_5end |
| EntrezGene: | Ndufaf2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| tube | 7.65e-11 | 114 |
| structure with developmental contribution from neural crest | 1.39e-10 | 92 |
| anatomical conduit | 6.14e-09 | 122 |
| gray matter | 1.33e-08 | 34 |
| neural tube | 6.85e-08 | 52 |
| neural rod | 6.85e-08 | 52 |
| future spinal cord | 6.85e-08 | 52 |
| neural keel | 6.85e-08 | 52 |
| regional part of nervous system | 1.09e-07 | 54 |
| brain grey matter | 3.67e-07 | 29 |
| regional part of telencephalon | 3.67e-07 | 29 |
| telencephalon | 3.67e-07 | 29 |
| compound organ | 5.11e-07 | 43 |
| neurectoderm | 8.64e-07 | 64 |
| neural plate | 8.64e-07 | 64 |
| presumptive neural plate | 8.64e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
