FFCP PHASE1:Mm9::chr5:123439299..123439324,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=118|UniProt=|association_with_transcript=-38bp_to_ENSMUST00000148466,uc008zmw.1_5end|description=CAGE_peak_3_at_ENSMUST00000148466_5end,CAGE_peak_3_at_uc008zmw.1_5end|id=chr5:123439299..123439324,+|ontology_enrichment_celltype=CL:0000838!1.54e-15!12;CL:0000791!9.57e-15!9;CL:0000789!9.57e-15!9;CL:0002420!9.57e-15!9;CL:0002419!9.57e-15!9;CL:0000790!9.57e-15!9;CL:0000084!3.84e-14!11;CL:0000827!3.84e-14!11;CL:0000542!4.43e-14!13;CL:0000051!4.43e-14!13;CL:0000624!2.82e-13!8;CL:0000738!6.74e-12!17;CL:0002087!6.74e-12!17;CL:0002031!2.23e-11!25;CL:0000893!2.31e-10!6;CL:0002489!2.31e-10!6;CL:0000898!2.31e-10!6;CL:0000809!2.31e-10!6;CL:0000810!2.31e-10!6;CL:0000895!2.31e-10!6;CL:0000808!2.31e-10!6;CL:0000894!2.31e-10!6;CL:0000806!2.31e-10!6;CL:0000807!2.31e-10!6;CL:0000805!2.31e-10!6;CL:0002425!2.31e-10!6;CL:0002436!2.31e-10!6;CL:0002427!2.31e-10!6;CL:0002428!2.31e-10!6;CL:0002429!2.31e-10!6;CL:0002433!2.31e-10!6;CL:0002431!2.31e-10!6;CL:0002432!2.31e-10!6;CL:0000988!6.22e-09!32;CL:0002032!6.22e-09!32;CL:0000037!6.22e-09!32;CL:0000566!6.22e-09!32;CL:0000837!6.22e-09!32|ontology_enrichment_celltype_v019_2=CL:0000791,1.28e-71,9;CL:0000789,1.28e-71,9;CL:0002420,1.28e-71,9;CL:0002419,1.28e-71,9;CL:0000790,1.28e-71,9;CL:0000838,6.69e-66,12;CL:0000624,9.85e-64,8;CL:0000542,8.28e-61,13;CL:0000051,8.28e-61,13;CL:0000084,1.49e-58,11;CL:0000827,1.49e-58,11;CL:0000893,3.73e-48,6;CL:0002489,3.73e-48,6;CL:0000898,3.73e-48,6;CL:0000809,3.73e-48,6;CL:0000810,3.73e-48,6;CL:0000895,3.73e-48,6;CL:0000808,3.73e-48,6;CL:0000894,3.73e-48,6;CL:0000806,3.73e-48,6;CL:0000807,3.73e-48,6;CL:0000805,3.73e-48,6;CL:0002425,3.73e-48,6;CL:0002436,3.73e-48,6;CL:0002427,3.73e-48,6;CL:0002428,3.73e-48,6;CL:0002429,3.73e-48,6;CL:0002433,3.73e-48,6;CL:0002431,3.73e-48,6;CL:0002432,3.73e-48,6;CL:0000738,2.03e-46,17;CL:0002087,2.03e-46,17;CL:0002031,1.98e-31,25;CL:0000988,1.91e-24,32;CL:0002032,1.91e-24,32;CL:0000037,1.91e-24,32;CL:0000837,1.91e-24,32;CL:0002320,7.90e-17,46;CL:0000134,7.90e-17,46;CL:0000219,3.06e-14,54;CL:0000625,2.09e-09,1;CL:0000815,3.04e-09,1;CL:0000792,3.04e-09,1;CL:0000945,5.27e-09,1;CL:0000236,5.27e-09,1;CL:0000826,5.27e-09,1;CL:0000723,3.83e-08,91;CL:0000048,3.83e-08,91;CL:0000034,1.38e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003408!2.25e-18!24;UBERON:0002370!4.19e-17!23;UBERON:0000974!4.19e-17!23;UBERON:0004807!4.19e-17!23;UBERON:0005058!4.19e-17!23;UBERON:0003351!4.19e-17!23;UBERON:0009113!4.19e-17!23;UBERON:0003295!4.19e-17!23;UBERON:0009722!4.19e-17!23;UBERON:0005562!4.19e-17!23;UBERON:0007690!4.19e-17!23;UBERON:0006562!3.70e-16!24;UBERON:0001557!3.70e-16!24;UBERON:0001042!3.70e-16!24;UBERON:0008814!3.70e-16!24;UBERON:0009145!3.70e-16!24;UBERON:0000072!9.50e-14!27;UBERON:0000063!1.68e-13!35;UBERON:0001004!1.66e-12!42;UBERON:0004177!1.99e-12!29;UBERON:0000065!1.54e-11!41;UBERON:0002193!1.76e-10!48;UBERON:0002390!1.88e-10!45;UBERON:0003061!1.88e-10!45;UBERON:0007811!1.60e-07!86;UBERON:0000153!7.47e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.90e-17,46;UBERON:0002370,1.57e-12,23;UBERON:0000974,1.57e-12,23;UBERON:0004807,1.57e-12,23;UBERON:0005058,1.57e-12,23;UBERON:0003351,1.57e-12,23;UBERON:0009113,1.57e-12,23;UBERON:0003295,1.57e-12,23;UBERON:0009722,1.57e-12,23;UBERON:0005562,1.57e-12,23;UBERON:0007690,1.57e-12,23;UBERON:0006562,5.32e-12,24;UBERON:0003408,5.32e-12,24;UBERON:0001557,5.32e-12,24;UBERON:0001042,5.32e-12,24;UBERON:0008814,5.32e-12,24;UBERON:0009145,5.32e-12,24;UBERON:0000072,1.20e-10,27;UBERON:0004177,6.71e-10,29;UBERON:0005057,6.71e-10,29;UBERON:0000077,3.65e-08,35;UBERON:0007811,6.25e-08,36;UBERON:0000065,6.23e-07,41;UBERON:0003929,8.78e-07,55;UBERON:0001004,9.25e-07,42|phase1_expression=0,0,0,0.30246421130683,0,0,0,4.77756296733832,8.58811205125167,12.4054198950657,9.24577028417727,3.27065851880879,4.45121897821135,5.59490575481583,0.333109761815663,0,0,0.315462165358238,0,0.42438965179803,0.0850432901510698,0,0.261199789138935,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0.194429899074283,0,0,1.67782606057736,7.97898356212479,7.05796978199174,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.135005938331691,0.210324961351382,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0.255457055208591,0,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0.234423373184406,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.948033361884535,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.302899349844443,0.457240839929999,0.604957110821043,0.779663045918019,0.962118416403295,0.584384510907845,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0.243106717068294,0,0,0,0,0,0.252697211763798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p3@ENSMUST00000148466,p3@uc008zmw.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=118 | |||
|UniProt= | |||
|association_with_transcript=-38bp_to_ENSMUST00000148466,uc008zmw.1_5end | |||
|description=CAGE_peak_3_at_ENSMUST00000148466_5end,CAGE_peak_3_at_uc008zmw.1_5end | |||
|id=chr5:123439299..123439324,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.54e-15!12;CL:0000791!9.57e-15!9;CL:0000789!9.57e-15!9;CL:0002420!9.57e-15!9;CL:0002419!9.57e-15!9;CL:0000790!9.57e-15!9;CL:0000084!3.84e-14!11;CL:0000827!3.84e-14!11;CL:0000542!4.43e-14!13;CL:0000051!4.43e-14!13;CL:0000624!2.82e-13!8;CL:0000738!6.74e-12!17;CL:0002087!6.74e-12!17;CL:0002031!2.23e-11!25;CL:0000893!2.31e-10!6;CL:0002489!2.31e-10!6;CL:0000898!2.31e-10!6;CL:0000809!2.31e-10!6;CL:0000810!2.31e-10!6;CL:0000895!2.31e-10!6;CL:0000808!2.31e-10!6;CL:0000894!2.31e-10!6;CL:0000806!2.31e-10!6;CL:0000807!2.31e-10!6;CL:0000805!2.31e-10!6;CL:0002425!2.31e-10!6;CL:0002436!2.31e-10!6;CL:0002427!2.31e-10!6;CL:0002428!2.31e-10!6;CL:0002429!2.31e-10!6;CL:0002433!2.31e-10!6;CL:0002431!2.31e-10!6;CL:0002432!2.31e-10!6;CL:0000988!6.22e-09!32;CL:0002032!6.22e-09!32;CL:0000037!6.22e-09!32;CL:0000566!6.22e-09!32;CL:0000837!6.22e-09!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.28e-71,9;CL:0000789,1.28e-71,9;CL:0002420,1.28e-71,9;CL:0002419,1.28e-71,9;CL:0000790,1.28e-71,9;CL:0000838,6.69e-66,12;CL:0000624,9.85e-64,8;CL:0000542,8.28e-61,13;CL:0000051,8.28e-61,13;CL:0000084,1.49e-58,11;CL:0000827,1.49e-58,11;CL:0000893,3.73e-48,6;CL:0002489,3.73e-48,6;CL:0000898,3.73e-48,6;CL:0000809,3.73e-48,6;CL:0000810,3.73e-48,6;CL:0000895,3.73e-48,6;CL:0000808,3.73e-48,6;CL:0000894,3.73e-48,6;CL:0000806,3.73e-48,6;CL:0000807,3.73e-48,6;CL:0000805,3.73e-48,6;CL:0002425,3.73e-48,6;CL:0002436,3.73e-48,6;CL:0002427,3.73e-48,6;CL:0002428,3.73e-48,6;CL:0002429,3.73e-48,6;CL:0002433,3.73e-48,6;CL:0002431,3.73e-48,6;CL:0002432,3.73e-48,6;CL:0000738,2.03e-46,17;CL:0002087,2.03e-46,17;CL:0002031,1.98e-31,25;CL:0000988,1.91e-24,32;CL:0002032,1.91e-24,32;CL:0000037,1.91e-24,32;CL:0000837,1.91e-24,32;CL:0002320,7.90e-17,46;CL:0000134,7.90e-17,46;CL:0000219,3.06e-14,54;CL:0000625,2.09e-09,1;CL:0000815,3.04e-09,1;CL:0000792,3.04e-09,1;CL:0000945,5.27e-09,1;CL:0000236,5.27e-09,1;CL:0000826,5.27e-09,1;CL:0000723,3.83e-08,91;CL:0000048,3.83e-08,91;CL:0000034,1.38e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003408!2.25e-18!24;UBERON:0002370!4.19e-17!23;UBERON:0000974!4.19e-17!23;UBERON:0004807!4.19e-17!23;UBERON:0005058!4.19e-17!23;UBERON:0003351!4.19e-17!23;UBERON:0009113!4.19e-17!23;UBERON:0003295!4.19e-17!23;UBERON:0009722!4.19e-17!23;UBERON:0005562!4.19e-17!23;UBERON:0007690!4.19e-17!23;UBERON:0006562!3.70e-16!24;UBERON:0001557!3.70e-16!24;UBERON:0001042!3.70e-16!24;UBERON:0008814!3.70e-16!24;UBERON:0009145!3.70e-16!24;UBERON:0000072!9.50e-14!27;UBERON:0000063!1.68e-13!35;UBERON:0001004!1.66e-12!42;UBERON:0004177!1.99e-12!29;UBERON:0000065!1.54e-11!41;UBERON:0002193!1.76e-10!48;UBERON:0002390!1.88e-10!45;UBERON:0003061!1.88e-10!45;UBERON:0007811!1.60e-07!86;UBERON:0000153!7.47e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.90e-17,46;UBERON:0002370,1.57e-12,23;UBERON:0000974,1.57e-12,23;UBERON:0004807,1.57e-12,23;UBERON:0005058,1.57e-12,23;UBERON:0003351,1.57e-12,23;UBERON:0009113,1.57e-12,23;UBERON:0003295,1.57e-12,23;UBERON:0009722,1.57e-12,23;UBERON:0005562,1.57e-12,23;UBERON:0007690,1.57e-12,23;UBERON:0006562,5.32e-12,24;UBERON:0003408,5.32e-12,24;UBERON:0001557,5.32e-12,24;UBERON:0001042,5.32e-12,24;UBERON:0008814,5.32e-12,24;UBERON:0009145,5.32e-12,24;UBERON:0000072,1.20e-10,27;UBERON:0004177,6.71e-10,29;UBERON:0005057,6.71e-10,29;UBERON:0000077,3.65e-08,35;UBERON:0007811,6.25e-08,36;UBERON:0000065,6.23e-07,41;UBERON:0003929,8.78e-07,55;UBERON:0001004,9.25e-07,42 | |||
|phase1_expression=0,0,0,0.30246421130683,0,0,0,4.77756296733832,8.58811205125167,12.4054198950657,9.24577028417727,3.27065851880879,4.45121897821135,5.59490575481583,0.333109761815663,0,0,0.315462165358238,0,0.42438965179803,0.0850432901510698,0,0.261199789138935,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0.194429899074283,0,0,1.67782606057736,7.97898356212479,7.05796978199174,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.135005938331691,0.210324961351382,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0.255457055208591,0,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0.234423373184406,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.948033361884535,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.302899349844443,0.457240839929999,0.604957110821043,0.779663045918019,0.962118416403295,0.584384510907845,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0.243106717068294,0,0,0,0,0,0.252697211763798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p3@ENSMUST00000148466,p3@uc008zmw.1 | |||
}} |
Revision as of 06:21, 14 September 2013
Short description: | p3@ENSMUST00000148466, p3@uc008zmw.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ENSMUST00000148466_5end, CAGE_peak_3_at_uc008zmw.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:118 |
Association with transcript: | -38bp_to_ENSMUST00000148466, uc008zmw.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 7.90e-17 | 46 |
thymus | 1.57e-12 | 23 |
neck | 1.57e-12 | 23 |
respiratory system epithelium | 1.57e-12 | 23 |
hemolymphoid system gland | 1.57e-12 | 23 |
pharyngeal epithelium | 1.57e-12 | 23 |
thymic region | 1.57e-12 | 23 |
pharyngeal gland | 1.57e-12 | 23 |
entire pharyngeal arch endoderm | 1.57e-12 | 23 |
thymus primordium | 1.57e-12 | 23 |
early pharyngeal endoderm | 1.57e-12 | 23 |
pharynx | 5.32e-12 | 24 |
gland of gut | 5.32e-12 | 24 |
upper respiratory tract | 5.32e-12 | 24 |
chordate pharynx | 5.32e-12 | 24 |
pharyngeal arch system | 5.32e-12 | 24 |
pharyngeal region of foregut | 5.32e-12 | 24 |
segment of respiratory tract | 1.20e-10 | 27 |
hemopoietic organ | 6.71e-10 | 29 |
immune organ | 6.71e-10 | 29 |
mixed endoderm/mesoderm-derived structure | 3.65e-08 | 35 |
craniocervical region | 6.25e-08 | 36 |
respiratory tract | 6.23e-07 | 41 |
gut epithelium | 8.78e-07 | 55 |
respiratory system | 9.25e-07 | 42 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.