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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008071
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000031;;FF:0000210
|is_a=EFO:0002091;;FF:0000031;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11998
|name=CD4+ T Cells, donor3
|name=CD4+ T Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522
|top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008071
|accession_numbers=DRX008178;DRR009050;DRZ000475;DRZ001860;CAGE
|library_id=CNhs11998
}}
}}

Revision as of 17:09, 16 October 2013


Name:CD4+ T Cells, donor3
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stage26 years old adult
sexfemale
age26
cell typet cell, CD4+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD4T734
catalog number3H100-23-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008071
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.422
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0203
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.234
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.691
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.844
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.132
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0.0812
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.513
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.657
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0812
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.839
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.543
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.209
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.691
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0713
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.15
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0812
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.404
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.589
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.868
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.554
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0812
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.672
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.387
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0812
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.484
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.762
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0812
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.816
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.485
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.611
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.209
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.933
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.509
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.75
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.773
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0812
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.276
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.868
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.717
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.387
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0812
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.15
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11998

Jaspar motifP-value
MA0002.24.33473e-4
MA0003.10.276
MA0004.10.955
MA0006.10.111
MA0007.10.644
MA0009.10.042
MA0014.10.907
MA0017.10.157
MA0018.26.19938e-11
MA0019.10.899
MA0024.10.76
MA0025.10.0314
MA0027.10.924
MA0028.10.0907
MA0029.10.216
MA0030.10.0112
MA0031.12.54189e-4
MA0035.20.365
MA0038.10.0471
MA0039.20.783
MA0040.10.658
MA0041.10.221
MA0042.10.677
MA0043.15.83864e-5
MA0046.10.0732
MA0047.20.406
MA0048.10.903
MA0050.11.49341e-5
MA0051.10.0383
MA0052.10.0728
MA0055.10.814
MA0057.10.228
MA0058.10.995
MA0059.10.798
MA0060.10.317
MA0061.16.26596e-7
MA0062.21.71693e-9
MA0065.20.644
MA0066.10.883
MA0067.17.16197e-4
MA0068.10.713
MA0069.10.882
MA0070.10.655
MA0071.10.482
MA0072.10.174
MA0073.10.767
MA0074.10.762
MA0076.10.0299
MA0077.10.0344
MA0078.10.986
MA0079.20.887
MA0080.22.98949e-10
MA0081.10.00744
MA0083.10.886
MA0084.10.528
MA0087.10.369
MA0088.10.179
MA0090.11.6737e-4
MA0091.10.208
MA0092.10.607
MA0093.10.926
MA0099.20.154
MA0100.10.99
MA0101.12.06805e-4
MA0102.20.883
MA0103.10.778
MA0104.20.363
MA0105.11.03783e-5
MA0106.10.0231
MA0107.12.37832e-4
MA0108.20.00742
MA0111.10.338
MA0112.20.0825
MA0113.10.282
MA0114.10.17
MA0115.10.163
MA0116.10.102
MA0117.10.0148
MA0119.10.388
MA0122.10.934
MA0124.10.152
MA0125.10.207
MA0131.10.0679
MA0135.10.372
MA0136.12.21623e-16
MA0137.20.193
MA0138.20.0238
MA0139.10.901
MA0140.10.42
MA0141.10.0575
MA0142.10.101
MA0143.10.181
MA0144.10.371
MA0145.10.00955
MA0146.10.853
MA0147.10.365
MA0148.10.96
MA0149.10.612
MA0150.10.398
MA0152.10.00195
MA0153.10.0921
MA0154.10.702
MA0155.10.135
MA0156.13.56145e-10
MA0157.10.00342
MA0159.10.794
MA0160.10.424
MA0162.10.104
MA0163.10.0374
MA0164.10.762
MA0258.10.503
MA0259.10.291



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11998

Novel motifP-value
10.96
100.00942
1000.639
1010.384
1020.839
1030.326
1040.945
1050.943
1060.276
1070.0114
1080.767
1090.958
110.768
1100.433
1110.853
1120.909
1130.387
1140.944
1150.664
1160.143
1170.00816
1180.485
1190.315
120.855
1200.473
1210.559
1220.902
1231.8901e-4
1240.601
1250.78
1260.914
1270.62
1280.639
1290.413
130.761
1300.172
1310.679
1320.232
1330.878
1340.89
1350.293
1360.706
1370.0289
1380.624
1390.0987
140.811
1400.381
1410.888
1420.383
1430.0431
1440.874
1450.367
1460.239
1470.0312
1480.58
1490.175
150.472
1500.975
1510.643
1520.694
1530.665
1540.159
1550.0554
1560.807
1570.669
1580.00492
1590.804
160.274
1600.0321
1610.659
1620.0135
1630.732
1640.074
1650.852
1660.257
1670.147
1680.43
1690.109
170.579
180.658
190.0261
20.1
200.157
210.949
220.164
230.863
240.452
250.184
260.984
270.676
280.5
290.0676
30.692
300.049
310.497
320.00673
330.415
340.21
350.517
360.142
370.594
380.519
390.295
40.996
400.529
410.192
420.38
430.893
440.864
450.0857
460.988
470.61
480.973
490.379
50.898
500.398
510.768
520.729
530.448
540.705
550.564
560.675
570.879
580.245
590.134
60.994
600.68
610.347
620.317
630.672
640.97
650.497
660.438
670.457
680.86
690.606
70.803
700.178
710.28
720.61
730.821
740.533
750.0617
760.177
770.0015
780.868
790.635
80.295
800.0822
810.966
820.564
830.709
840.122
850.879
860.0769
870.629
880.936
890.00176
90.663
900.411
910.777
920.946
930.842
940.505
950.209
960.953
970.379
980.424
991.57038e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11998


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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