FFCP PHASE1:Hg19::chr12:4671352..4671390,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8798|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3095|TSSclassifier=W|UniProt=F5H4X6,F5H3D3,F5GWS4,F5H6L9|association_with_transcript=0bp_to_ENST00000537719,ENST00000539309,ENST00000539701,ENST00000542744,uc009zeh.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_3_at_DYRK4_5end|id=chr12:4671352..4671390,+|ontology_enrichment_celltype=CL:0000766!3.21e-18!76;CL:0000839!1.22e-17!70;CL:0000557!2.92e-17!71;CL:0002194!1.92e-16!63;CL:0000576!1.92e-16!63;CL:0000040!1.92e-16!63;CL:0000559!1.92e-16!63;CL:0002009!1.12e-15!65;CL:0000738!8.05e-13!140;CL:0002393!1.97e-12!9;CL:0002397!1.97e-12!9;CL:0002087!1.84e-11!119;CL:0002057!5.43e-11!42;CL:0002031!1.20e-10!124;CL:0000763!4.07e-10!112;CL:0000049!4.07e-10!112;CL:0000860!6.59e-10!45;CL:0000988!5.28e-09!182;CL:0000037!6.23e-09!172;CL:0000566!6.23e-09!172;CL:0002032!2.32e-07!165;CL:0000837!2.32e-07!165;CL:0002619!5.30e-07!3|ontology_enrichment_celltype_v019=CL:0000235;1.41e-15;6!CL:0000473;7.97e-09;39!CL:0000234;7.97e-09;39!CL:0000875;1.26e-08;3!CL:0002619;1.26e-08;3!CL:0002396;1.26e-08;3!CL:0000766;5.93e-07;69|ontology_enrichment_celltype_v019_2=CL:0000235,1.52e-15,6;CL:0002194,3.78e-13,59;CL:0000576,3.78e-13,59;CL:0000040,3.78e-13,59;CL:0000559,3.78e-13,59;CL:0002009,1.00e-12,61;CL:0000839,8.90e-12,66;CL:0000557,1.33e-11,67;CL:0000473,1.41e-11,48;CL:0000234,1.41e-11,48;CL:0000766,8.27e-11,72;CL:0002619,1.12e-08,3;CL:0000875,1.30e-08,3;CL:0002396,1.30e-08,3;CL:0000763,3.23e-07,108;CL:0000049,3.23e-07,108;CL:0002087,8.95e-07,115|ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.76e-14!80;UBERON:0002193!3.48e-14!112;UBERON:0007023!1.19e-13!115;UBERON:0002390!1.41e-13!102;UBERON:0003061!1.41e-13!102;UBERON:0001474!1.15e-12!86;UBERON:0002405!7.33e-11!115;UBERON:0004765!2.23e-10!101;UBERON:0001434!2.23e-10!101;UBERON:0001049!1.62e-09!57;UBERON:0005068!1.62e-09!57;UBERON:0006241!1.62e-09!57;UBERON:0007135!1.62e-09!57;UBERON:0002616!5.76e-08!59;UBERON:0003075!9.57e-08!86;UBERON:0007284!9.57e-08!86;UBERON:0002346!4.12e-07!90|ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.54e-12,8;UBERON:0002371,3.02e-10,76;UBERON:0001474,1.67e-09,82;UBERON:0003135,4.08e-09,11;UBERON:0004765,1.16e-08,90;UBERON:0002405,2.20e-08,93;UBERON:0002390,5.89e-08,98;UBERON:0003061,5.89e-08,98;UBERON:0001434,8.50e-08,100;UBERON:0002193,3.23e-07,108|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0.767658796194425,0.464448369948228,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,1.56740831967947,0.647787332037959,0.77272670290256,0,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0,0,1.93645405075148,0,0,0.818718450173537,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0,0,1.0429658368404,0,0,0.368277635987565,0.316462387440884,0.845021145247767,0.212604299965044,0.209658645508376,0,0,0.16072558669708,1.42506371870624,0.59675003159727,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0.954053754535364,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,11.1987109550544,0,0,0,0.174129737299267,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0.246217006087397,0.468008530278475,0.594524649154913,0,0,0,0,0,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0.394584402849391,0,0,0.442306057399416,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0.160753148465019,0,0,0,0,0.182248669974074,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.177404740325278,0,0,0.135939465953663,0.197318320688547,0,0,0,0,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713520544665411,0,0.109940516745429,0,0.0771741581079447,0,0,0,0,0.588925401344836,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.126166424835079,0,0.253397002022874,0,0,0,0.250707539292375,25.2343065066737,36.1751575710841,0,0.310298987585686,0.213233981900981,0,0,0,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0|short_description=p3@DYRK4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8798 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3095 | |||
|TSSclassifier=W | |||
|UniProt=F5H4X6,F5H3D3,F5GWS4,F5H6L9 | |||
|association_with_transcript=0bp_to_ENST00000537719,ENST00000539309,ENST00000539701,ENST00000542744,uc009zeh.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_DYRK4_5end | |||
|id=chr12:4671352..4671390,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.21e-18!76;CL:0000839!1.22e-17!70;CL:0000557!2.92e-17!71;CL:0002194!1.92e-16!63;CL:0000576!1.92e-16!63;CL:0000040!1.92e-16!63;CL:0000559!1.92e-16!63;CL:0002009!1.12e-15!65;CL:0000738!8.05e-13!140;CL:0002393!1.97e-12!9;CL:0002397!1.97e-12!9;CL:0002087!1.84e-11!119;CL:0002057!5.43e-11!42;CL:0002031!1.20e-10!124;CL:0000763!4.07e-10!112;CL:0000049!4.07e-10!112;CL:0000860!6.59e-10!45;CL:0000988!5.28e-09!182;CL:0000037!6.23e-09!172;CL:0000566!6.23e-09!172;CL:0002032!2.32e-07!165;CL:0000837!2.32e-07!165;CL:0002619!5.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000235;1.41e-15;6!CL:0000473;7.97e-09;39!CL:0000234;7.97e-09;39!CL:0000875;1.26e-08;3!CL:0002619;1.26e-08;3!CL:0002396;1.26e-08;3!CL:0000766;5.93e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.52e-15,6;CL:0002194,3.78e-13,59;CL:0000576,3.78e-13,59;CL:0000040,3.78e-13,59;CL:0000559,3.78e-13,59;CL:0002009,1.00e-12,61;CL:0000839,8.90e-12,66;CL:0000557,1.33e-11,67;CL:0000473,1.41e-11,48;CL:0000234,1.41e-11,48;CL:0000766,8.27e-11,72;CL:0002619,1.12e-08,3;CL:0000875,1.30e-08,3;CL:0002396,1.30e-08,3;CL:0000763,3.23e-07,108;CL:0000049,3.23e-07,108;CL:0002087,8.95e-07,115 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.76e-14!80;UBERON:0002193!3.48e-14!112;UBERON:0007023!1.19e-13!115;UBERON:0002390!1.41e-13!102;UBERON:0003061!1.41e-13!102;UBERON:0001474!1.15e-12!86;UBERON:0002405!7.33e-11!115;UBERON:0004765!2.23e-10!101;UBERON:0001434!2.23e-10!101;UBERON:0001049!1.62e-09!57;UBERON:0005068!1.62e-09!57;UBERON:0006241!1.62e-09!57;UBERON:0007135!1.62e-09!57;UBERON:0002616!5.76e-08!59;UBERON:0003075!9.57e-08!86;UBERON:0007284!9.57e-08!86;UBERON:0002346!4.12e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.54e-12,8;UBERON:0002371,3.02e-10,76;UBERON:0001474,1.67e-09,82;UBERON:0003135,4.08e-09,11;UBERON:0004765,1.16e-08,90;UBERON:0002405,2.20e-08,93;UBERON:0002390,5.89e-08,98;UBERON:0003061,5.89e-08,98;UBERON:0001434,8.50e-08,100;UBERON:0002193,3.23e-07,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0.767658796194425,0.464448369948228,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,1.56740831967947,0.647787332037959,0.77272670290256,0,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0,0,1.93645405075148,0,0,0.818718450173537,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0,0,1.0429658368404,0,0,0.368277635987565,0.316462387440884,0.845021145247767,0.212604299965044,0.209658645508376,0,0,0.16072558669708,1.42506371870624,0.59675003159727,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0.954053754535364,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,11.1987109550544,0,0,0,0.174129737299267,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0.246217006087397,0.468008530278475,0.594524649154913,0,0,0,0,0,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0.394584402849391,0,0,0.442306057399416,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0.160753148465019,0,0,0,0,0.182248669974074,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.177404740325278,0,0,0.135939465953663,0.197318320688547,0,0,0,0,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713520544665411,0,0.109940516745429,0,0.0771741581079447,0,0,0,0,0.588925401344836,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.126166424835079,0,0.253397002022874,0,0,0,0.250707539292375,25.2343065066737,36.1751575710841,0,0.310298987585686,0.213233981900981,0,0,0,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@DYRK4 | |||
}} |
Revision as of 22:43, 10 September 2013
Short description: | p3@DYRK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_DYRK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000537719, ENST00000539309, ENST00000539701, ENST00000542744, uc009zeh.1_5end |
EntrezGene: | DYRK4 |
HGNC: | 3095 |
UniProt: | F5H4X6F5H3D3F5GWS4F5H6L9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.52e-15 | 6 |
monopoietic cell | 3.78e-13 | 59 |
monocyte | 3.78e-13 | 59 |
monoblast | 3.78e-13 | 59 |
promonocyte | 3.78e-13 | 59 |
macrophage dendritic cell progenitor | 1.00e-12 | 61 |
myeloid lineage restricted progenitor cell | 8.90e-12 | 66 |
granulocyte monocyte progenitor cell | 1.33e-11 | 67 |
defensive cell | 1.41e-11 | 48 |
phagocyte | 1.41e-11 | 48 |
myeloid leukocyte | 8.27e-11 | 72 |
adult endothelial progenitor cell | 1.12e-08 | 3 |
non-classical monocyte | 1.30e-08 | 3 |
CD14-low, CD16-positive monocyte | 1.30e-08 | 3 |
myeloid cell | 3.23e-07 | 108 |
common myeloid progenitor | 3.23e-07 | 108 |
nongranular leukocyte | 8.95e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
testis | 3.54e-12 | 8 |
bone marrow | 3.02e-10 | 76 |
bone element | 1.67e-09 | 82 |
male reproductive organ | 4.08e-09 | 11 |
skeletal element | 1.16e-08 | 90 |
immune system | 2.20e-08 | 93 |
hematopoietic system | 5.89e-08 | 98 |
blood island | 5.89e-08 | 98 |
skeletal system | 8.50e-08 | 100 |
hemolymphoid system | 3.23e-07 | 108 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.