FFCP PHASE1:Hg19::chr10:70980080..70980096,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80201 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23302 | |||
|TSSclassifier=strong | |||
|UniProt=Q2TB90,B3KT70 | |||
|association_with_transcript=21bp_to_ENST00000354624,ENST00000395086,ENST00000395087,NM_025130,uc001jpf.3_5end | |||
|description=CAGE_peak_1_at_HKDC1_5end | |||
|id=chr10:70980080..70980096,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.87e-12!254;CL:1000497!7.66e-10!18;CL:0002518!7.66e-10!18;CL:1000507!9.83e-10!12;CL:1000494!9.83e-10!12;CL:0000223!1.06e-09!59;CL:1000449!6.92e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.73e-19;10!CL:1000494;1.73e-19;10!CL:1000497;6.33e-18;17!CL:0002518;6.33e-18;17!CL:1000449;1.78e-14;15!CL:0002681;8.15e-10;12!CL:0002584;8.15e-10;12!CL:0002586;2.33e-07;3!CL:0000239;3.98e-07;3!CL:1000615;3.98e-07;3!CL:0002306;3.98e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.79e-19,10;CL:1000494,1.79e-19,10;CL:1000497,6.68e-18,17;CL:0002518,6.68e-18,17;CL:1000449,1.88e-14,15;CL:0000066,9.41e-14,253;CL:0002681,8.67e-10,12;CL:0002584,8.67e-10,12;CL:0000223,6.00e-09,58;CL:0002586,2.35e-07,3;CL:0000239,3.98e-07,3;CL:1000615,3.98e-07,3;CL:0002306,3.98e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009497;3.55e-13;13!UBERON:0004161;6.43e-10;11!UBERON:0001041;4.41e-09;30!UBERON:0003104;6.56e-09;31 | |||
|ontology_enrichment_disease=DOID:120!1.24e-13!27;DOID:193!2.42e-13!29;DOID:299!2.07e-10!25;DOID:305!8.00e-09!106;DOID:2394!1.55e-08!14;DOID:0050687!3.02e-08!143;DOID:162!3.00e-07!235;DOID:14566!4.33e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:299;6.88e-13;25!DOID:120;1.79e-11;27!DOID:193;2.02e-10;29!DOID:2394;2.37e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:299,6.76e-13,25;DOID:120,1.79e-11,27;DOID:193,2.02e-10,29;DOID:305,1.35e-08,106;DOID:2394,2.40e-08,14;DOID:0050687,8.45e-08,143;DOID:162,9.07e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000466!3.81e-14!126;UBERON:0005172!6.47e-14!55;UBERON:0005173!6.47e-14!55;UBERON:0002417!3.34e-12!61;UBERON:0000916!3.34e-12!61;UBERON:0003886!3.93e-12!63;UBERON:0002553!1.56e-10!70;UBERON:0005177!5.08e-10!107;UBERON:0000062!8.69e-10!511;UBERON:0000058!9.65e-10!26;UBERON:0009773!9.83e-10!12;UBERON:0001231!9.83e-10!12;UBERON:0004810!9.83e-10!12;UBERON:0003133!2.09e-09!48;UBERON:0002113!2.16e-09!27;UBERON:0003918!2.16e-09!27;UBERON:0005095!2.16e-09!27;UBERON:0007687!2.16e-09!27;UBERON:0005409!2.55e-09!35;UBERON:0009497!3.94e-09!25;UBERON:0000015!3.94e-09!25;UBERON:0002423!3.94e-09!25;UBERON:0006235!3.94e-09!25;UBERON:0004161!3.94e-09!25;UBERON:0005156!5.04e-09!59;UBERON:0000990!5.04e-09!59;UBERON:0000949!7.89e-09!45;UBERON:0009854!1.16e-08!23;UBERON:0000160!1.27e-08!27;UBERON:0003929!1.30e-08!54;UBERON:0006555!1.52e-08!17;UBERON:0005103!1.52e-08!17;UBERON:0000083!1.52e-08!17;UBERON:0009201!1.52e-08!17;UBERON:0004819!1.52e-08!17;UBERON:0006553!1.52e-08!17;UBERON:0003074!1.52e-08!17;UBERON:0003060!1.52e-08!17;UBERON:0001048!1.75e-08!168;UBERON:0000481!1.83e-08!347;UBERON:0000464!1.84e-08!104;UBERON:0003134!1.91e-08!37;UBERON:0000474!1.91e-08!37;UBERON:0009856!2.90e-08!26;UBERON:0008835!3.44e-08!22;UBERON:0003894!3.44e-08!22;UBERON:0002368!5.24e-08!35;UBERON:0000489!5.99e-08!32;UBERON:0004211!6.92e-08!16;UBERON:0001285!6.92e-08!16;UBERON:0007684!6.92e-08!16;UBERON:0003220!6.92e-08!16;UBERON:0004208!6.92e-08!16;UBERON:0000080!7.42e-08!18;UBERON:0002120!7.42e-08!18;UBERON:0004875!7.42e-08!18;UBERON:0005721!7.42e-08!18;UBERON:0005754!7.42e-08!18;UBERON:0007297!7.42e-08!18;UBERON:0007499!8.32e-08!25;UBERON:0000922!1.27e-07!612;UBERON:0000991!1.74e-07!21;UBERON:0009196!1.74e-07!21;UBERON:0009117!1.74e-07!21;UBERON:0005564!1.74e-07!21;UBERON:0005911!2.54e-07!82;UBERON:0004119!3.27e-07!169;UBERON:0000925!3.27e-07!169;UBERON:0006595!3.27e-07!169;UBERON:0003887!4.42e-07!21;UBERON:0003100!5.21e-07!41;UBERON:0004176!5.80e-07!22;UBERON:0004921!8.27e-07!129;UBERON:0004185!8.27e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.73e-19;10!UBERON:0009773;1.73e-19;10!UBERON:0001231;1.73e-19;10!UBERON:0004810;1.73e-19;10!UBERON:0002113;9.39e-16;24!UBERON:0011143;9.39e-16;24!UBERON:0006555;1.78e-14;15!UBERON:0004819;1.78e-14;15!UBERON:0001285;1.78e-14;15!UBERON:0007684;1.78e-14;15!UBERON:0005172;7.68e-13;52!UBERON:0005173;7.68e-13;52!UBERON:0000489;2.69e-12;29!UBERON:0006554;9.53e-12;30!UBERON:0001008;9.53e-12;30!UBERON:0002423;1.24e-11;25!UBERON:0005409;3.75e-10;22!UBERON:0001225;8.15e-10;12!UBERON:0008987;8.15e-10;12!UBERON:0001851;1.40e-09;15!UBERON:0002417;2.28e-09;58!UBERON:0000916;2.28e-09;58!UBERON:0000160;3.28e-09;17!UBERON:0000353;1.63e-07;15!UBERON:0001781;2.33e-07;3!UBERON:0001782;2.33e-07;3!UBERON:0002108;3.97e-07;4!UBERON:0000966;3.97e-07;5!UBERON:0005388;3.97e-07;5!UBERON:0001802;3.97e-07;5!UBERON:0006853;3.98e-07;3!UBERON:0007685;3.98e-07;3!UBERON:0004134;3.98e-07;3!UBERON:0002294;4.60e-07;7!UBERON:0001173;4.60e-07;7!UBERON:0002368;6.41e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,1.48e-20,54;UBERON:0005173,1.48e-20,54;UBERON:0004810,1.79e-19,10;UBERON:0002417,1.17e-17,60;UBERON:0000916,1.17e-17,60;UBERON:0002113,5.51e-16,26;UBERON:0003918,5.51e-16,26;UBERON:0011143,5.51e-16,26;UBERON:0005095,5.51e-16,26;UBERON:0007687,5.51e-16,26;UBERON:0006555,1.39e-15,16;UBERON:0004819,1.39e-15,16;UBERON:0005177,2.37e-15,101;UBERON:0004211,1.88e-14,15;UBERON:0009773,1.88e-14,15;UBERON:0001231,1.88e-14,15;UBERON:0001285,1.88e-14,15;UBERON:0007684,1.88e-14,15;UBERON:0004208,1.88e-14,15;UBERON:0000489,1.14e-12,31;UBERON:0009497,1.15e-11,25;UBERON:0000015,1.15e-11,25;UBERON:0002423,1.15e-11,25;UBERON:0006235,1.15e-11,25;UBERON:0004161,1.15e-11,25;UBERON:0009569,3.37e-10,112;UBERON:0008835,6.14e-10,22;UBERON:0003894,6.14e-10,22;UBERON:0007499,6.88e-10,25;UBERON:0001225,8.67e-10,12;UBERON:0008987,8.67e-10,12;UBERON:0001851,1.49e-09,15;UBERON:0009856,2.19e-09,26;UBERON:0009854,2.23e-09,23;UBERON:0000160,3.19e-09,17;UBERON:0005409,1.22e-08,25;UBERON:0001781,1.54e-08,4;UBERON:0000966,2.33e-08,6;UBERON:0005388,2.33e-08,6;UBERON:0001802,2.33e-08,6;UBERON:0006554,5.82e-08,47;UBERON:0001008,1.05e-07,48;UBERON:0000949,1.08e-07,45;UBERON:0003929,1.20e-07,54;UBERON:0000353,1.71e-07,15;UBERON:0005911,1.96e-07,82;UBERON:0001782,2.35e-07,3;UBERON:0005424,2.35e-07,3;UBERON:0002368,3.46e-07,35;UBERON:0002108,3.91e-07,4;UBERON:0006853,3.98e-07,3;UBERON:0007685,3.98e-07,3;UBERON:0004134,3.98e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.572471974262113,0.136874425072884,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,8.38266083185361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0.573673241497627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0.504641701751257,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,0,0,0,5.90789906681404,0,42.6769881744604,14.7548316856732,0,0,0,0,0,0,1.44331342025273,15.9983958865606,0.234817388471643,0,0,0,0,0,0,0,0,8.43604505880993,1.17587489739202,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33022691825131,3.48613383440118,1.69954085009497,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,1.30139853857622,1.54657762555539,2.17771144934653,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,15.8325878965025,0.601519410909855,0.276242966807689,0,0,0,56.3999516134265,24.2598311878907,22.7461433061288,40.918982902913,23.3269099853255,0,0,2.15915916102139,0,34.1392511305255,24.081109145033,38.4863172298008,29.9187363214341,42.7600781519361,0,0,76.422137284684,26.8972009473759,126.24681712975,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,3.30569830721956,1.92190067365106,0.255225424989168,4.75441570021085,0,0,0,0,0.532306030317022,0,0,0.858749320451947,0,1.89827654831236,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3282702530686,0,0,0,2.55722532125772,0,0,0,0,0,0.667852230137435,0,0,0,0.276283915531148,0.251932747854276,0.20453736500431,0,0,22.1974827333897,96.3133919754777,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.482385754501632,0,0,0,0.658156191461918,0,0.139423744278603,0.384751292518985,0.113942055847001,0,0,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,17.3018412912982,37.543545876604,9.18794964320615,0,0,40.7789372360394,9.77648231893801,0,0,0,0.404406797884062,0,0.234264445725339,0,0.19566461893209,1.45668227720456,0,25.4080503702194,0.91821828489147,0.063186579628488,0,0,0,0,0.313932918407225,0,38.9915078060816,2.21879476821022,0.347119476670262,0,0,1.04836000945218,0.171986032471617,0,0.0730893170861856,0,0,0,20.5642474110285,0,0,0,0,5.21032331634969,15.7955216107121,0,101.583744093645,0,0.686379991447858,0.14405479798815,0,0,1.08723364858891,1.77824838730966,0,0.577901179803038,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0.360299883542404,11.6495949527454,12.5265259868486,13.5986166328925,11.3911989113572,165.456596426293,0,0,0,0,0,0,0,0,0.121499113316049,0,20.8835124342875,20.5097439607843,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,1.46552233678082,19.8760333368332,0.129282956361551,0.13223260174269,185.115958590844,0,1.38823636338003,0.157204305099666,1.24271716604159,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0.332787154610557,0.310482014706917,99.6110171540862,0,0.303298235083296,0,0.705797459094515,0,0,0,0,0,0,0,0,0.915360273587694,0.151230923763239,0.15543720058278,0,0.318593534327405,10.3454715797629,1.70789252563885,0,0.265841714557995,2.08698024724694,1.35231848097497,3.42724690951916,1.22061219961398,0,6.33722286550682,0.464033759878494,1.59238355479446,0,0,0,0,34.2863298125,0,55.8527784805553,0.453411851024545,0,0,0,0.308801447160972,0,0,21.6063722863425,2.53413660979609,122.995928922214,26.9435666550335,0,0,0,0,0,0.327609848846413,0.983091635014877,34.4438761074562,0,0,0,0,0,0.139879507719444,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0.252071696221718,0.0691572524642179,0,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.902523940191087,2.42046082444224,3.12605604493237,0,0,30.3104976744943,0,0,0,0,0,0,0,4.22090986463089,0,43.3918487061412,25.8938466108494,0,0.227662191351298,0.0887023701626388,0,0.171488009437418,0,0,0.590969204419841,0,0,0,13.1727916757481,2.73947616152849,51.6066943012505,43.9531552856086,17.0828940582209,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,34.4329088087395,10.5109283287518,20.469544018996,58.3993890010696,27.9192048209397,0,0,0,0,0,0,0,0,0,0,103.181849390322,45.2418290243192,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0.436350690340377,20.6320467801006,0,0,0,0,0,0,0.203977659483963,0.801652215796681,0.551369397209069,0,0.454672189309436,0.535928260312357,0,0,0.639701945702943,0.23806443146374,0,0.0620747142958579,0.897054900644907,1.20929600728513,3.63810940124795,0,0,0,1.14755528628282,0,0,3.20182037633146,1.9307228228694,52.188442423927,0,0.611207220914332,0.406896178315738,0,0,0 | |||
|short_description=p1@HKDC1 | |||
}} |
Revision as of 03:16, 11 January 2014
Short description: | p1@HKDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HKDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000354624, ENST00000395086, ENST00000395087, NM_025130, uc001jpf.3_5end |
EntrezGene: | HKDC1 |
HGNC: | 23302 |
UniProt: | Q2TB90B3KT70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.79e-19 | 10 |
nephron tubule epithelial cell | 1.79e-19 | 10 |
kidney cell | 6.68e-18 | 17 |
kidney epithelial cell | 6.68e-18 | 17 |
epithelial cell of nephron | 1.88e-14 | 15 |
epithelial cell | 9.41e-14 | 253 |
kidney cortical cell | 8.67e-10 | 12 |
renal cortical epithelial cell | 8.67e-10 | 12 |
endodermal cell | 6.00e-09 | 58 |
retinal pigment epithelial cell | 2.35e-07 | 3 |
brush border epithelial cell | 3.98e-07 | 3 |
kidney cortex tubule cell | 3.98e-07 | 3 |
epithelial cell of proximal tubule | 3.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 6.76e-13 | 25 |
female reproductive organ cancer | 1.79e-11 | 27 |
reproductive organ cancer | 2.02e-10 | 29 |
carcinoma | 1.35e-08 | 106 |
ovarian cancer | 2.40e-08 | 14 |
cell type cancer | 8.45e-08 | 143 |
cancer | 9.07e-07 | 235 |