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FF:11905-125F6: Difference between revisions

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|creation_date=
|creation_date=
|def=
|def=
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172..37407217,-!0.45!3.87;;chr8:182368..182402,+!0.45!3.87;;chr1:114302066..114302080,-!0.45!3.87;;chr10:94449649..94449664,+!0.45!3.10;;chr19:12512015..12512044,-!0.45!3.10;;chr19:58666399..58666438,-!0.45!3.10;;chr1:6845598..6845601,+!0.45!2.32;;chr11:130184828..130184839,-!0.45!2.32;;chr11:65686776..65686787,+!0.45!2.32;;chr6:135502501..135502546,+!0.45!2.32;;chr8:103666182..103666197,-!0.45!2.32;;chr19:1863568..1863586,-!0.44!81.25;;chr5:132299290..132299310,-!0.44!47.98;;chr6:35464817..35464894,-!0.44!37.92;;chr6:87865262..87865311,+!0.44!32.50;;chr16:3333443..3333545,+!0.44!29.40;;chr19:53935221..53935258,+!0.44!24.76;;chr4:87856191..87856208,+!0.44!19.35;;chr19:24269981..24270007,+!0.44!15.48;;chr17:4981745..4981810,+!0.44!11.61;;chr19:45909594..45909625,-!0.44!10.83;;chr3:150126416..150126437,+!0.44!8.51;;chr1:8585945..8586056,-!0.44!7.74;;chr9:73029219..73029289,-!0.44!6.96;;chr7:6676930..6676939,+!0.44!3.87;;chr19:58373157..58373159,+!0.44!3.87;;chr15:31619535..31619569,+!0.44!3.87;;chr12:6798731..6798751,-!0.44!3.10;;chr15:57025812..57025819,-!0.44!3.10;;chr6:15245797..15245818,+!0.44!2.32;;chr7:127032262..127032294,-!0.44!2.32;;chr9:16870659..16870675,-!0.44!2.32;;chr3:193853927..193853944,+!0.43!79.70;;chr3:23986762..23986821,+!0.43!37.14;;chr7:1570322..1570360,+!0.43!20.12;;chr18:72922777..72922808,+!0.43!10.83;;chr9:128509663..128509715,+!0.43!7.74;;chr1:211432823..211432851,+!0.43!5.42;;chr10:63809077..63809089,+!0.43!4.64;;chr7:1570388..1570418,+!0.43!4.64;;chr13:41635067..41635100,-!0.43!3.87;;chr15:90544688..90544728,+!0.43!3.87;;chr11:16759983..16760029,-!0.43!3.10;;chr7:128577972..128578047,+!0.43!3.10;;chr1:211432784..211432796,+!0.43!2.32;;chr3:150126200..150126211,+!0.43!2.32;;chr16:69599861..69599885,+!0.42!38.69;;chr2:174828545..174828644,-!0.42!36.37;;chr19:21950362..21950388,-!0.42!20.89;;chr1:202777561..202777582,-!0.42!20.12;;chr7:64126503..64126528,+!0.42!16.25;;chr11:65479702..65479731,+!0.42!14.70;;chr6:41703296..41703367,-!0.42!11.61;;chr21:30671189..30671207,+!0.42!7.74;;chr3:52719546..52719636,-!0.42!7.74;;chr16:89787402..89787430,+!0.42!6.96;;chr2:97202451..97202462,+!0.42!4.64;;chr4:87928307..87928321,+!0.42!4.64;;chr7:148959065..148959126,+!0.42!4.64;;chr1:35657108..35657135,-!0.42!3.87;;chr7:127032330..127032356,-!0.42!2.32;;chr20:62258402..62258464,-!0.41!25.54;;chr11:47236584..47236679,+!0.41!24.76;;chr4:18023350..18023385,-!0.41!19.35;;chr3:141868357..141868393,-!0.41!14.70;;chr7:26191809..26191890,+!0.41!10.83;;chrX:101186981..101187030,-!0.41!6.96;;chr7:55955139..55955190,+!0.41!5.42;;chr19:36705547..36705597,-!0.41!5.42;;chr12:10875658..10875708,-!0.41!4.64;;chr19:19932586..19932598,-!0.41!3.87;;chr8:116681150..116681164,-!0.41!3.87;;chr9:128510454..128510469,+!0.41!2.32;;chr1:211432872..211432883,+!0.41!2.32;;chr1:44679370..44679422,+!0.41!2.32;;chr19:24216201..24216212,+!0.41!2.32;;chr3:170076314..170076334,+!0.41!2.32;;chr17:80477099..80477123,+!0.41!1.55;;chr19:16435735..16435773,+!0.41!1.55;;chr19:24270027..24270034,+!0.41!1.55;;chr19:3572689..3572697,+!0.41!1.55;;chr19:38085978..38085996,-!0.41!1.55;;chr19:38270528..38270545,-!0.41!1.55;;chr19:45971060..45971122,+!0.41!1.55;;chr19:53758167..53758190,-!0.41!1.55;;chr19:54041467..54041479,+!0.41!1.55;;chr19:54041534..54041545,+!0.41!1.55;;chr19:54041603..54041615,+!0.41!1.55;;chr19:54058046..54058053,+!0.41!1.55;;chr19:57352087..57352102,-!0.41!1.55;;chr19:58545454..58545498,+!0.41!1.55;;chr2:10091783..10091811,+!0.41!1.55;;chr2:102091514..102091528,-!0.41!1.55;;chr2:157189101..157189111,-!0.41!1.55;;chr2:157189356..157189359,-!0.41!1.55;;chr2:208394431..208394446,+!0.41!1.55;;chr2:208394455..208394471,+!0.41!1.55;;chr2:231090433..231090469,+!0.41!1.55;;chr20:18038486..18038520,-!0.41!1.55;;chr20:50158915..50158926,-!0.41!1.55;;chr20:50722202..50722217,-!0.41!1.55;;chr21:30671130..30671140,+!0.41!1.55;;chr21:30673091..30673135,+!0.41!1.55;;chr21:40177120..40177141,+!0.41!1.55;;chr21:40181951..40181963,+!0.41!1.55;;chr22:38609538..38609547,+!0.41!1.55;;chr22:38609570..38609585,+!0.41!1.55;;chr22:41763274..41763318,+!0.41!1.55;;chr3:187455529..187455544,-!0.41!1.55;;chr3:187455680..187455700,-!0.41!1.55;;chr4:103478257..103478273,+!0.41!1.55;;chr4:57522476..57522500,-!0.41!1.55;;chr4:87857538..87857549,+!0.41!1.55;;chr4:87927888..87927912,+!0.41!1.55;;chr6:10412576..10412599,-!0.41!1.55;;chr6:10419884..10419898,-!0.41!1.55;;chr6:116989837..116989843,-!0.41!1.55;;chr6:15246501..15246524,+!0.41!1.55;;chr6:15246799..15246810,+!0.41!1.55;;chr6:41701557..41701578,-!0.41!1.55;;chr6:91006629..91006641,-!0.41!1.55;;chr7:139762578..139762589,-!0.41!1.55;;chr7:149470297..149470337,-!0.41!1.55;;chr7:27205136..27205164,-!0.41!1.55;;chr7:35293685..35293718,-!0.41!1.55;;chr8:123793252..123793266,+!0.41!1.55;;chr8:25902876..25902936,-!0.41!1.55;;chr9:102583633..102583644,+!0.41!1.55;;chrX:131622988..131623006,-!0.41!1.55;;chrX:47696239..47696254,+!0.41!1.55;;chrX:84499056..84499078,+!0.41!1.55;;chr1:212787899..212787903,+!0.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|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=

Revision as of 17:33, 29 March 2012


Name:immature langerhans cells, donor2
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typelangerhans cell
cell lineNA
companyNA
collaborationTeunis Geijtenbeek
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberLC-II
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0000048 (multi fate stem cell)
0000049 (common myeloid progenitor)
0000134 (mesenchymal cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000548 (animal cell)
0000557 (granulocyte monocyte progenitor cell)
0000566 (angioblastic mesenchymal cell)
0000723 (somatic stem cell)
0000738 (leukocyte)
0000763 (myeloid cell)
0000837 (hematopoietic multipotent progenitor cell)
0000840 (immature conventional dendritic cell)
0000988 (hematopoietic cell)
0000990 (conventional dendritic cell)
0001012 (CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)
0001019 (CD115-positive monocyte OR common dendritic progenitor)
0001029 (common dendritic progenitor)
0002009 (macrophage dendritic cell progenitor)
0002031 (hematopoietic lineage restricted progenitor cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002320 (connective tissue cell)
0002371 (somatic cell)

UBERON: Anatomy
0000061 (anatomical structure)
0000062 (organ)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000479 (tissue)
0000480 (anatomical group)
0000922 (embryo)
0000923 (germ layer)
0000926 (mesoderm)
0001062 (anatomical entity)
0001434 (skeletal system)
0001474 (bone element)
0002050 (embryonic structure)
0002193 (hemolymphoid system)
0002204 (musculoskeletal system)
0002371 (bone marrow)
0002384 (connective tissue)
0002390 (hematopoietic system)
0002405 (immune system)
0002532 (epiblast (generic))
0004120 (mesoderm-derived structure)
0004765 (skeletal element)
0005423 (developing anatomical structure)

FF: FANTOM5
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Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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