FFCP PHASE1:Hg19::chr1:13840157..13840176,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=126755|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27005|TSSclassifier=S|UniProt=Q5VT99|association_with_transcript=65bp_to_NM_001010847,uc001avb.2_5end|coexpression_cluster_id=C24|description=CAGE_peak_3_at_LRRC38_5end|id=chr1:13840157..13840176,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0004874;3.70e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3571;1.22e-08;1!DOID:3112;2.59e-08;1|ontology_enrichment_disease_v019_2=DOID:3571,1.22e-08,1;DOID:3112,2.89e-08,1|ontology_enrichment_uberon=UBERON:0007023!7.43e-24!115;UBERON:0001017!2.57e-21!82;UBERON:0005743!4.14e-21!86;UBERON:0001049!1.36e-18!57;UBERON:0005068!1.36e-18!57;UBERON:0006241!1.36e-18!57;UBERON:0007135!1.36e-18!57;UBERON:0000073!5.32e-18!94;UBERON:0001016!5.32e-18!94;UBERON:0000955!2.98e-17!69;UBERON:0006238!2.98e-17!69;UBERON:0002346!7.23e-17!90;UBERON:0002616!3.11e-16!59;UBERON:0003075!1.33e-15!86;UBERON:0007284!1.33e-15!86;UBERON:0000153!1.49e-13!129;UBERON:0007811!1.49e-13!129;UBERON:0000924!4.97e-13!173;UBERON:0006601!4.97e-13!173;UBERON:0000033!3.70e-12!123;UBERON:0000025!5.05e-12!194;UBERON:0004121!5.18e-12!169;UBERON:0004111!2.35e-11!241;UBERON:0000477!3.10e-11!286;UBERON:0003076!3.87e-11!15;UBERON:0003057!3.87e-11!15;UBERON:0002780!1.83e-10!41;UBERON:0001890!1.83e-10!41;UBERON:0006240!1.83e-10!41;UBERON:0001950!1.89e-10!20;UBERON:0003080!4.28e-10!42;UBERON:0000483!6.85e-10!309;UBERON:0000119!1.27e-09!312;UBERON:0002619!2.97e-09!22;UBERON:0002020!3.47e-09!34;UBERON:0003528!3.47e-09!34;UBERON:0001893!4.19e-09!34;UBERON:0002298!1.08e-08!8;UBERON:0002791!3.58e-08!33;UBERON:0000956!8.11e-08!25;UBERON:0000203!8.11e-08!25;UBERON:0001869!1.17e-07!32;UBERON:0004733!1.74e-07!12;UBERON:0002028!1.74e-07!12;UBERON:0007277!1.74e-07!12;UBERON:0003056!4.29e-07!61;UBERON:0000481!7.29e-07!347;UBERON:0004732!8.57e-07!13|ontology_enrichment_uberon_v019=UBERON:0001905;9.97e-16;2!UBERON:0002757;9.97e-16;2!UBERON:0010134;9.97e-16;2!UBERON:0005408;9.97e-16;2!UBERON:0001899;9.97e-16;2!UBERON:0005090;2.05e-15;2!UBERON:0001630;2.05e-15;2!UBERON:0001723;6.36e-10;3!UBERON:0001033;6.36e-10;3!UBERON:0003513;1.42e-09;7!UBERON:0001389;1.46e-08;1!UBERON:0000026;1.46e-08;1!UBERON:0008784;1.46e-08;1!UBERON:0006058;1.46e-08;1!UBERON:0002426;1.46e-08;1!UBERON:0003831;1.46e-08;1!UBERON:0003898;1.46e-08;1!UBERON:0004830;1.46e-08;1!UBERON:0003663;1.46e-08;1!UBERON:0004256;1.46e-08;1!UBERON:0004708;1.46e-08;1!UBERON:0002101;1.46e-08;1!UBERON:0004709;1.46e-08;1!UBERON:0003830;1.46e-08;1!UBERON:0005175;1.46e-08;1!UBERON:0002529;1.46e-08;1!UBERON:0010538;1.46e-08;1!UBERON:0003661;1.46e-08;1!UBERON:0010890;1.46e-08;1!UBERON:0002471;1.46e-08;1!UBERON:0001774;1.46e-08;1!UBERON:0001383;1.46e-08;1!UBERON:0010758;1.46e-08;1!UBERON:0010707;1.46e-08;1!UBERON:0001103;1.46e-08;1!UBERON:0000978;1.46e-08;1!UBERON:0002103;1.46e-08;1!UBERON:0001665;1.46e-08;1!UBERON:0003823;1.46e-08;1!UBERON:0000154;1.46e-08;1!UBERON:0010709;1.46e-08;1!UBERON:0003296;2.69e-08;4!UBERON:0010133;2.69e-08;4!UBERON:0002784;2.69e-08;4!UBERON:0000989;3.70e-08;1!UBERON:0008811;3.70e-08;1!UBERON:0002135;5.82e-08;1!UBERON:0001301;5.82e-08;1!UBERON:0002346;8.53e-08;4!UBERON:0000923;8.53e-08;4!UBERON:0010316;8.53e-08;4!UBERON:0005291;8.53e-08;4!UBERON:0001134;2.37e-07;16!UBERON:0002036;2.37e-07;16|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.98e-16,2;UBERON:0002757,9.98e-16,2;UBERON:0010134,9.98e-16,2;UBERON:0005408,9.98e-16,2;UBERON:0001899,9.98e-16,2;UBERON:0005090,2.05e-15,2;UBERON:0001630,2.05e-15,2;UBERON:0001723,6.81e-10,3;UBERON:0001033,6.81e-10,3;UBERON:0010056,6.81e-10,3;UBERON:0003513,1.40e-09,7;UBERON:0002426,1.41e-08,1;UBERON:0003831,1.41e-08,1;UBERON:0003898,1.41e-08,1;UBERON:0004830,1.41e-08,1;UBERON:0003830,1.41e-08,1;UBERON:0005175,1.41e-08,1;UBERON:0001774,1.41e-08,1;UBERON:0001103,1.41e-08,1;UBERON:0010084,1.41e-08,1;UBERON:0005418,1.52e-08,1;UBERON:0001389,1.52e-08,1;UBERON:0000026,1.52e-08,1;UBERON:0008784,1.52e-08,1;UBERON:0006058,1.52e-08,1;UBERON:0003663,1.52e-08,1;UBERON:0004256,1.52e-08,1;UBERON:0004708,1.52e-08,1;UBERON:0002101,1.52e-08,1;UBERON:0004709,1.52e-08,1;UBERON:0002529,1.52e-08,1;UBERON:0010538,1.52e-08,1;UBERON:0003661,1.52e-08,1;UBERON:0010890,1.52e-08,1;UBERON:0002471,1.52e-08,1;UBERON:0001383,1.52e-08,1;UBERON:0004357,1.52e-08,1;UBERON:0004347,1.52e-08,1;UBERON:0005420,1.52e-08,1;UBERON:0005732,1.52e-08,1;UBERON:0010758,1.52e-08,1;UBERON:0010707,1.52e-08,1;UBERON:0000978,1.52e-08,1;UBERON:0002103,1.52e-08,1;UBERON:0001665,1.52e-08,1;UBERON:0003823,1.52e-08,1;UBERON:0000154,1.52e-08,1;UBERON:0010709,1.52e-08,1;UBERON:0005733,1.52e-08,1;UBERON:0005730,1.52e-08,1;UBERON:0003296,2.69e-08,4;UBERON:0010133,2.69e-08,4;UBERON:0002784,2.69e-08,4;UBERON:0000989,3.10e-08,1;UBERON:0008811,3.10e-08,1;UBERON:0006258,3.10e-08,1;UBERON:0005876,3.10e-08,1;UBERON:0004874,3.10e-08,1;UBERON:0002135,5.07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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=126755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |||
|TSSclassifier=S | |||
|UniProt=Q5VT99 | |||
|association_with_transcript=65bp_to_NM_001010847,uc001avb.2_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_3_at_LRRC38_5end | |||
|id=chr1:13840157..13840176,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004874;3.70e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;1.22e-08;1!DOID:3112;2.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.22e-08,1;DOID:3112,2.89e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.43e-24!115;UBERON:0001017!2.57e-21!82;UBERON:0005743!4.14e-21!86;UBERON:0001049!1.36e-18!57;UBERON:0005068!1.36e-18!57;UBERON:0006241!1.36e-18!57;UBERON:0007135!1.36e-18!57;UBERON:0000073!5.32e-18!94;UBERON:0001016!5.32e-18!94;UBERON:0000955!2.98e-17!69;UBERON:0006238!2.98e-17!69;UBERON:0002346!7.23e-17!90;UBERON:0002616!3.11e-16!59;UBERON:0003075!1.33e-15!86;UBERON:0007284!1.33e-15!86;UBERON:0000153!1.49e-13!129;UBERON:0007811!1.49e-13!129;UBERON:0000924!4.97e-13!173;UBERON:0006601!4.97e-13!173;UBERON:0000033!3.70e-12!123;UBERON:0000025!5.05e-12!194;UBERON:0004121!5.18e-12!169;UBERON:0004111!2.35e-11!241;UBERON:0000477!3.10e-11!286;UBERON:0003076!3.87e-11!15;UBERON:0003057!3.87e-11!15;UBERON:0002780!1.83e-10!41;UBERON:0001890!1.83e-10!41;UBERON:0006240!1.83e-10!41;UBERON:0001950!1.89e-10!20;UBERON:0003080!4.28e-10!42;UBERON:0000483!6.85e-10!309;UBERON:0000119!1.27e-09!312;UBERON:0002619!2.97e-09!22;UBERON:0002020!3.47e-09!34;UBERON:0003528!3.47e-09!34;UBERON:0001893!4.19e-09!34;UBERON:0002298!1.08e-08!8;UBERON:0002791!3.58e-08!33;UBERON:0000956!8.11e-08!25;UBERON:0000203!8.11e-08!25;UBERON:0001869!1.17e-07!32;UBERON:0004733!1.74e-07!12;UBERON:0002028!1.74e-07!12;UBERON:0007277!1.74e-07!12;UBERON:0003056!4.29e-07!61;UBERON:0000481!7.29e-07!347;UBERON:0004732!8.57e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;9.97e-16;2!UBERON:0002757;9.97e-16;2!UBERON:0010134;9.97e-16;2!UBERON:0005408;9.97e-16;2!UBERON:0001899;9.97e-16;2!UBERON:0005090;2.05e-15;2!UBERON:0001630;2.05e-15;2!UBERON:0001723;6.36e-10;3!UBERON:0001033;6.36e-10;3!UBERON:0003513;1.42e-09;7!UBERON:0001389;1.46e-08;1!UBERON:0000026;1.46e-08;1!UBERON:0008784;1.46e-08;1!UBERON:0006058;1.46e-08;1!UBERON:0002426;1.46e-08;1!UBERON:0003831;1.46e-08;1!UBERON:0003898;1.46e-08;1!UBERON:0004830;1.46e-08;1!UBERON:0003663;1.46e-08;1!UBERON:0004256;1.46e-08;1!UBERON:0004708;1.46e-08;1!UBERON:0002101;1.46e-08;1!UBERON:0004709;1.46e-08;1!UBERON:0003830;1.46e-08;1!UBERON:0005175;1.46e-08;1!UBERON:0002529;1.46e-08;1!UBERON:0010538;1.46e-08;1!UBERON:0003661;1.46e-08;1!UBERON:0010890;1.46e-08;1!UBERON:0002471;1.46e-08;1!UBERON:0001774;1.46e-08;1!UBERON:0001383;1.46e-08;1!UBERON:0010758;1.46e-08;1!UBERON:0010707;1.46e-08;1!UBERON:0001103;1.46e-08;1!UBERON:0000978;1.46e-08;1!UBERON:0002103;1.46e-08;1!UBERON:0001665;1.46e-08;1!UBERON:0003823;1.46e-08;1!UBERON:0000154;1.46e-08;1!UBERON:0010709;1.46e-08;1!UBERON:0003296;2.69e-08;4!UBERON:0010133;2.69e-08;4!UBERON:0002784;2.69e-08;4!UBERON:0000989;3.70e-08;1!UBERON:0008811;3.70e-08;1!UBERON:0002135;5.82e-08;1!UBERON:0001301;5.82e-08;1!UBERON:0002346;8.53e-08;4!UBERON:0000923;8.53e-08;4!UBERON:0010316;8.53e-08;4!UBERON:0005291;8.53e-08;4!UBERON:0001134;2.37e-07;16!UBERON:0002036;2.37e-07;16 | |||
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|short_description=p3@LRRC38 | |||
}} |
Revision as of 23:58, 11 September 2013
Short description: | p3@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 65bp_to_NM_001010847, uc001avb.2_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.22e-08 | 1 |
papillary adenocarcinoma | 2.89e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.