FFCP PHASE1:Hg19::chr1:28415078..28415165,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2140|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3521|TSSclassifier=S|UniProt=B4DIR7,B4DNZ7,Q99504,Q8IVX7|association_with_transcript=0bp_to_ENST00000436342,ENST00000471498,ENST00000540618,ENST00000545175,NM_001990,uc001bpi.1,uc001bpj.2,uc001bpk.1,uc010ofs.1,uc010oft.1,uc010ofu.1_5end|description=CAGE_peak_1_at_EYA3_5end|id=chr1:28415078..28415165,-|ontology_enrichment_celltype=CL:0000763!2.69e-18!112;CL:0000049!2.69e-18!112;CL:0002032!2.20e-12!165;CL:0000837!2.20e-12!165;CL:0000860!9.27e-12!45;CL:0000839!3.43e-11!70;CL:0000557!5.00e-11!71;CL:0002057!8.26e-11!42;CL:0000037!9.31e-11!172;CL:0000566!9.31e-11!172;CL:0002009!2.22e-10!65;CL:0000766!3.31e-10!76;CL:0002194!6.38e-10!63;CL:0000576!6.38e-10!63;CL:0000040!6.38e-10!63;CL:0000559!6.38e-10!63;CL:0000988!8.91e-10!182|ontology_enrichment_celltype_v019=CL:0000860;2.61e-15;33!CL:0002057;2.61e-15;33!CL:0000473;6.27e-11;39!CL:0000234;6.27e-11;39!CL:0000576;1.12e-07;48|ontology_enrichment_celltype_v019_2=CL:0000763,2.04e-17,108;CL:0000049,2.04e-17,108;CL:0002032,1.23e-11,161;CL:0000837,1.23e-11,161;CL:0000860,8.26e-11,42;CL:0002057,8.26e-11,42;CL:0000839,2.18e-10,66;CL:0000557,3.15e-10,67;CL:0000037,4.66e-10,168;CL:0002009,1.38e-09,61;CL:0000473,1.94e-09,48;CL:0000234,1.94e-09,48;CL:0000766,1.99e-09,72;CL:0000988,2.61e-09,177;CL:0002194,3.93e-09,59;CL:0000576,3.93e-09,59;CL:0000040,3.93e-09,59;CL:0000559,3.93e-09,59|ontology_enrichment_development_v019=CL:0002057;2.07e-08;42|ontology_enrichment_disease=DOID:2531!3.03e-09!51;DOID:0060083!3.03e-09!51;DOID:1240!2.34e-08!39;DOID:8692!1.17e-07!31|ontology_enrichment_disease_v019=DOID:8692;1.73e-07;31!DOID:1240;3.43e-07;39|ontology_enrichment_disease_v019_2=DOID:2531,3.03e-09,51;DOID:0060083,3.03e-09,51;DOID:1240,2.34e-08,39;DOID:8692,1.17e-07,31|ontology_enrichment_uberon=UBERON:0007023!1.08e-13!115;UBERON:0001474!1.77e-09!86;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0002193!3.50e-09!112;UBERON:0002371!3.60e-08!80;UBERON:0001049!1.73e-07!57;UBERON:0005068!1.73e-07!57;UBERON:0006241!1.73e-07!57;UBERON:0007135!1.73e-07!57;UBERON:0004765!4.30e-07!101;UBERON:0001434!4.30e-07!101;UBERON:0003080!8.48e-07!42;UBERON:0002780!8.55e-07!41;UBERON:0001890!8.55e-07!41;UBERON:0006240!8.55e-07!41|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.15e-13,114;UBERON:0002390,9.78e-09,98;UBERON:0003061,9.78e-09,98;UBERON:0001474,9.90e-09,82;UBERON:0002193,1.77e-08,108;UBERON:0002405,1.96e-08,93;UBERON:0001049,1.79e-07,56;UBERON:0005068,1.79e-07,56;UBERON:0006241,1.79e-07,56;UBERON:0007135,1.79e-07,56;UBERON:0002371,1.89e-07,76;UBERON:0000073,3.41e-07,53;UBERON:0002616,3.41e-07,53;UBERON:0002780,8.55e-07,41;UBERON:0001890,8.55e-07,41;UBERON:0003080,8.55e-07,41;UBERON:0006240,8.55e-07,41|phase1_expression=16.3510541343501,11.9896293378951,17.7602549160924,5.00366491765652,11.1740273606822,8.72338524100369,7.59899634504932,10.1075179748293,13.3204670381918,11.0580271425679,6.97801167972428,15.2908960491121,11.605747042052,14.2331305904054,6.95934489028623,24.2037052722639,15.6700577286234,10.9546513558106,16.1017823600867,17.975674479211,7.95602695852587,8.14982275843028,27.4786547645814,20.5311637609326,18.9569385788152,56.7751604707278,53.6937855002645,59.1905075478868,9.8341069212226,13.0501995353052,16.1008768248719,14.7107395916628,14.457884101356,9.61360426433648,40.2829443017568,68.0990623614749,15.2672228454121,13.8498852132969,11.2304890583279,16.7098370451206,22.3915474239924,33.6849412659739,24.7272544928819,42.4562857236329,58.5707712717655,47.7890600539998,38.350791089438,43.5837961303135,50.4821384559019,50.6338610486985,77.3605333717884,71.8905978861299,26.200671735983,41.3110197493649,36.5651513804723,36.5190138712653,60.0393530127261,54.6078067201556,35.5057315150247,57.7672248736968,49.8682958123252,49.8075463281941,71.4079894285442,63.5074878293714,45.5628504646877,95.3207177481115,102.142848835274,44.7222624157003,56.3201551893818,65.8082199456503,33.2969726448353,84.7038562771399,95.5716410071471,15.4216359007718,22.9612643962247,15.3050811221114,19.3205245571972,27.1820176043126,22.9837588976825,15.6757009057687,18.3003343023163,15.7091172237585,12.3197371122926,23.4839602842717,17.7901850772711,17.9226693477933,16.4162354684765,21.8405927182704,15.8650769468367,19.0810750907073,10.8150464130795,15.2681669236444,16.8200220375101,11.8954195721123,11.7706798226123,15.5396610017295,12.1960057470577,10.6112905942274,5.96244347098577,45.4747267462644,19.2294137313818,17.5175688121851,19.4826728407911,29.8580024452265,17.6763544484902,19.0519149341914,15.7066240983709,29.589094856631,33.8154303655683,20.5547380754595,18.7918012094377,24.9230653732145,17.9426741426093,20.6006437629079,16.7256838087963,33.9928028092699,15.3288197440768,12.7142154828573,18.7234572094432,14.6540090589084,11.0684187155591,12.3558765778289,20.3276410754993,22.01369711856,18.7396089828519,18.2318484073893,13.1380479507367,10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15892716,25.2515265924897,9.26404341482917,13.5956110738798,22.9695889729645,25.0788249752189,28.8891573516754,16.3994571896286,9.32661922674236,19.4470371953525,38.9888789947881,52.0277024601167,35.6077772039813,38.7649984386351,8.51785607000673,14.5006016164694,7.8185485642692,24.7984370860113,30.0870677737477,22.5601623355669,13.0528669320372,21.1721842789617,9.51180652492222,18.6623178009892,14.5799583286163,13.2624518017919,22.803561569105,15.72618789965,28.1755999723682,26.146715172507,15.1201632395983,12.8488331133846,17.1722349352846,47.1593235107495,12.008561224282,19.7498528466783,18.6809741185452,30.8300280463006,34.0071783181404,35.2790828516304,18.6655891459087,23.6947394448415,22.8218933131919,22.2836390971955,22.8431072414647,28.5609860837985,18.9931254589862,11.9228589039091,9.47310462432773,6.10211352747467,30.3758367466444,35.2081713145806,30.1593416680522,29.6506450994174,25.7899623706921,23.8335091978094,22.7642965339034,27.5012320363704,26.0019700780819,19.5269524653462,39.0638045387238,31.7079050969534,30.0836144960021,21.3820529074301,23.3219253842968,32.0085664734509,10.3487566388072,47.1417615572892,72.9735677214848,47.3433171304573,71.7135902756587,24.6592589052136,26.619051125385,21.9504652079896,32.2856231639951,23.8097440297514,16.5471377237555,23.5810572011187,29.4349098189428,26.7096502857203,34.473476087596,24.6552854537564,56.1411737168416,39.1756384067381,42.3141141525806,35.8690898633289,25.9218378570919,17.7335437748631,22.4479182124471,25.6948043562166,19.6326248658042,31.1066847816341,30.5461424762397,21.5364241329629,26.2457286658206,33.0241899148925,17.4121220093478,15.510319283216,22.9329345354584,17.22573649686,35.2359338678722,20.6041293220035,36.2560148825221,20.7378869849619,25.5159174894404,25.7426826321344,22.9260674192864,23.2772406938801,19.859655159854,23.1539468179868,45.6253144493531,51.9312181869357,29.1718317648031,24.2601112159393,24.9268167071607,19.6118657403124,11.312474260878,32.194588606851,30.0016864330357,19.4421634688364,15.803221665967,31.6725803592107,38.6747327841463,34.1798753263257,10.1775745005225,7.76368717774522,26.4796510074255,22.640428035642,23.8539227370361,25.8011249672612,32.500941811796,20.5334300376562,29.2354962528053,37.031878836078,14.1358106903365,15.2517957448368,14.276676550085,28.3874455878928,43.5969632135145,28.6338612285848,16.0122462694911,62.7960902374067,24.903517773943,57.1613189586615,43.4969727772694,54.6646825518604,24.0459137443046,33.7191566509778,41.1541585068893,23.3303142834466,35.7176671393114,54.5636738660591,30.163471034185,32.7782865132549,24.6582970529028,30.6980614534715,14.7160319466671,56.1042601611514,28.8323265678559,22.9535646016749,37.1198904866044,29.8836568457603,27.0301195201716,8.71304460433893,23.4640942403454,40.2174351361631,24.0068745206286,35.2851090318322,28.7821524835168,22.4397944612263|short_description=p1@EYA3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2140 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3521 | |||
|TSSclassifier=S | |||
|UniProt=B4DIR7,B4DNZ7,Q99504,Q8IVX7 | |||
|association_with_transcript=0bp_to_ENST00000436342,ENST00000471498,ENST00000540618,ENST00000545175,NM_001990,uc001bpi.1,uc001bpj.2,uc001bpk.1,uc010ofs.1,uc010oft.1,uc010ofu.1_5end | |||
|description=CAGE_peak_1_at_EYA3_5end | |||
|id=chr1:28415078..28415165,- | |||
|ontology_enrichment_celltype=CL:0000763!2.69e-18!112;CL:0000049!2.69e-18!112;CL:0002032!2.20e-12!165;CL:0000837!2.20e-12!165;CL:0000860!9.27e-12!45;CL:0000839!3.43e-11!70;CL:0000557!5.00e-11!71;CL:0002057!8.26e-11!42;CL:0000037!9.31e-11!172;CL:0000566!9.31e-11!172;CL:0002009!2.22e-10!65;CL:0000766!3.31e-10!76;CL:0002194!6.38e-10!63;CL:0000576!6.38e-10!63;CL:0000040!6.38e-10!63;CL:0000559!6.38e-10!63;CL:0000988!8.91e-10!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.61e-15;33!CL:0002057;2.61e-15;33!CL:0000473;6.27e-11;39!CL:0000234;6.27e-11;39!CL:0000576;1.12e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.04e-17,108;CL:0000049,2.04e-17,108;CL:0002032,1.23e-11,161;CL:0000837,1.23e-11,161;CL:0000860,8.26e-11,42;CL:0002057,8.26e-11,42;CL:0000839,2.18e-10,66;CL:0000557,3.15e-10,67;CL:0000037,4.66e-10,168;CL:0002009,1.38e-09,61;CL:0000473,1.94e-09,48;CL:0000234,1.94e-09,48;CL:0000766,1.99e-09,72;CL:0000988,2.61e-09,177;CL:0002194,3.93e-09,59;CL:0000576,3.93e-09,59;CL:0000040,3.93e-09,59;CL:0000559,3.93e-09,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.07e-08;42 | |||
|ontology_enrichment_disease=DOID:2531!3.03e-09!51;DOID:0060083!3.03e-09!51;DOID:1240!2.34e-08!39;DOID:8692!1.17e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.73e-07;31!DOID:1240;3.43e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.03e-09,51;DOID:0060083,3.03e-09,51;DOID:1240,2.34e-08,39;DOID:8692,1.17e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-13!115;UBERON:0001474!1.77e-09!86;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0002193!3.50e-09!112;UBERON:0002371!3.60e-08!80;UBERON:0001049!1.73e-07!57;UBERON:0005068!1.73e-07!57;UBERON:0006241!1.73e-07!57;UBERON:0007135!1.73e-07!57;UBERON:0004765!4.30e-07!101;UBERON:0001434!4.30e-07!101;UBERON:0003080!8.48e-07!42;UBERON:0002780!8.55e-07!41;UBERON:0001890!8.55e-07!41;UBERON:0006240!8.55e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@EYA3 | |||
}} |
Revision as of 05:06, 12 September 2013
Short description: | p1@EYA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_EYA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000436342, ENST00000471498, ENST00000540618, ENST00000545175, NM_001990, uc001bpi.1, uc001bpj.2, uc001bpk.1, uc010ofs.1, uc010oft.1, uc010ofu.1_5end |
EntrezGene: | EYA3 |
HGNC: | 3521 |
UniProt: | B4DIR7B4DNZ7Q99504Q8IVX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.04e-17 | 108 |
common myeloid progenitor | 2.04e-17 | 108 |
hematopoietic oligopotent progenitor cell | 1.23e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.23e-11 | 161 |
classical monocyte | 8.26e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.26e-11 | 42 |
myeloid lineage restricted progenitor cell | 2.18e-10 | 66 |
granulocyte monocyte progenitor cell | 3.15e-10 | 67 |
hematopoietic stem cell | 4.66e-10 | 168 |
macrophage dendritic cell progenitor | 1.38e-09 | 61 |
defensive cell | 1.94e-09 | 48 |
phagocyte | 1.94e-09 | 48 |
myeloid leukocyte | 1.99e-09 | 72 |
hematopoietic cell | 2.61e-09 | 177 |
monopoietic cell | 3.93e-09 | 59 |
monocyte | 3.93e-09 | 59 |
monoblast | 3.93e-09 | 59 |
promonocyte | 3.93e-09 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.15e-13 | 114 |
hematopoietic system | 9.78e-09 | 98 |
blood island | 9.78e-09 | 98 |
bone element | 9.90e-09 | 82 |
hemolymphoid system | 1.77e-08 | 108 |
immune system | 1.96e-08 | 93 |
neural tube | 1.79e-07 | 56 |
neural rod | 1.79e-07 | 56 |
future spinal cord | 1.79e-07 | 56 |
neural keel | 1.79e-07 | 56 |
bone marrow | 1.89e-07 | 76 |
regional part of nervous system | 3.41e-07 | 53 |
regional part of brain | 3.41e-07 | 53 |
regional part of forebrain | 8.55e-07 | 41 |
forebrain | 8.55e-07 | 41 |
anterior neural tube | 8.55e-07 | 41 |
future forebrain | 8.55e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.03e-09 | 51 |
immune system cancer | 3.03e-09 | 51 |
leukemia | 2.34e-08 | 39 |
myeloid leukemia | 1.17e-07 | 31 |
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