FFCP PHASE1:Hg19::chr4:77356248..77356295,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57619|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30422|TSSclassifier=S|UniProt=Q8TF72,B3KY47|association_with_transcript=0bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end|coexpression_cluster_id=C2796|description=CAGE_peak_5_at_SHROOM3_5end|id=chr4:77356248..77356295,+|ontology_enrichment_celltype=CL:0000128!1.87e-08!7;CL:0000126!1.87e-08!7;CL:0000127!1.87e-08!7;CL:0002453!1.87e-08!7;CL:0002319!8.51e-08!25|ontology_enrichment_celltype_v019=CL:0002605;5.26e-11;3!CL:0000064;1.00e-10;3!CL:0000067;1.00e-10;3!CL:0005012;1.00e-10;3!CL:0002304;1.00e-10;3!CL:0002586;1.16e-10;3!CL:0002319;7.22e-10;25!CL:0000149;4.40e-08;4!CL:0000128;1.10e-07;7!CL:0000126;1.10e-07;7!CL:0000127;1.10e-07;7!CL:0000047;1.36e-07;2|ontology_enrichment_celltype_v019_2=CL:0002605,5.46e-11,3;CL:0000064,1.04e-10,3;CL:0000067,1.04e-10,3;CL:0005012,1.04e-10,3;CL:0002304,1.04e-10,3;CL:0002586,1.07e-10,3;CL:0000133,1.39e-10,59;CL:0002319,8.81e-10,25;CL:0000047,1.50e-09,8;CL:0000149,4.16e-08,4;CL:0000221,5.04e-08,72;CL:0000128,1.22e-07,7;CL:0000126,1.22e-07,7;CL:0000127,1.22e-07,7;CL:0002453,1.22e-07,7|ontology_enrichment_development_v019=CL:0000133;6.26e-07;59|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;7.86e-08;2!DOID:299;6.64e-07;25|ontology_enrichment_disease_v019_2=DOID:3493,7.88e-08,2;DOID:299,6.65e-07,25|ontology_enrichment_uberon=UBERON:0005743!9.25e-16!86;UBERON:0003075!1.42e-15!86;UBERON:0007284!1.42e-15!86;UBERON:0002346!5.98e-15!90;UBERON:0004121!9.25e-14!169;UBERON:0000924!1.71e-13!173;UBERON:0006601!1.71e-13!173;UBERON:0000073!6.52e-13!94;UBERON:0001016!6.52e-13!94;UBERON:0001017!6.57e-13!82;UBERON:0000153!1.92e-12!129;UBERON:0007811!1.92e-12!129;UBERON:0007023!1.97e-11!115;UBERON:0000033!3.41e-11!123;UBERON:0003056!1.24e-10!61;UBERON:0007625!3.08e-09!11;UBERON:0001049!7.25e-09!57;UBERON:0005068!7.25e-09!57;UBERON:0006241!7.25e-09!57;UBERON:0007135!7.25e-09!57;UBERON:0000062!1.15e-07!511;UBERON:0000955!1.67e-07!69;UBERON:0006238!1.67e-07!69;UBERON:0003080!8.86e-07!42;UBERON:0001893!9.58e-07!34|ontology_enrichment_uberon_v019=UBERON:0007625;1.19e-22;11!UBERON:0000970;4.85e-17;20!UBERON:0002104;4.14e-16;21!UBERON:0001456;4.14e-16;21!UBERON:0000019;4.79e-15;19!UBERON:0000047;4.79e-15;19!UBERON:0004088;4.79e-15;19!UBERON:0010230;4.79e-15;19!UBERON:0000020;1.72e-14;23!UBERON:0001032;8.79e-14;24!UBERON:0004456;8.79e-14;24!UBERON:0000488;1.43e-13;4!UBERON:0001778;1.00e-10;3!UBERON:0001775;1.00e-10;3!UBERON:0001781;1.16e-10;3!UBERON:0001782;1.16e-10;3!UBERON:0000966;1.63e-10;5!UBERON:0005388;1.63e-10;5!UBERON:0001802;1.63e-10;5!UBERON:0010371;5.93e-10;31!UBERON:0002203;4.90e-09;6!UBERON:0001768;4.90e-09;6!UBERON:0002200;4.90e-09;6!UBERON:0001801;8.95e-08;14!UBERON:0001829;3.91e-07;2!UBERON:0000341;5.08e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.40e-22,11;UBERON:0000970,4.04e-16,21;UBERON:0002104,4.04e-16,21;UBERON:0001456,2.53e-15,22;UBERON:0000019,3.43e-14,20;UBERON:0000047,3.43e-14,20;UBERON:0010312,3.43e-14,20;UBERON:0004088,3.43e-14,20;UBERON:0010230,3.43e-14,20;UBERON:0003072,3.43e-14,20;UBERON:0004128,3.43e-14,20;UBERON:0003071,3.43e-14,20;UBERON:0000020,8.60e-14,24;UBERON:0001032,8.60e-14,24;UBERON:0004456,8.60e-14,24;UBERON:0000488,1.33e-13,4;UBERON:0001778,1.04e-10,3;UBERON:0001775,1.04e-10,3;UBERON:0001782,1.07e-10,3;UBERON:0005424,1.07e-10,3;UBERON:0005085,3.58e-10,31;UBERON:0002203,4.67e-09,6;UBERON:0001768,4.67e-09,6;UBERON:0002200,4.67e-09,6;UBERON:0000966,7.63e-09,6;UBERON:0005388,7.63e-09,6;UBERON:0001802,7.63e-09,6;UBERON:0001781,4.16e-08,4;UBERON:0001444,4.39e-08,49;UBERON:0000153,6.29e-08,62;UBERON:0007811,6.29e-08,62;UBERON:0001801,9.97e-08,14;UBERON:0001829,2.92e-07,2;UBERON:0001048,4.14e-07,160;UBERON:0004121,5.52e-07,171;UBERON:0000924,5.52e-07,171;UBERON:0006601,5.52e-07,171;UBERON:0003056,5.78e-07,61;UBERON:0000341,5.93e-07,2;UBERON:0003075,7.75e-07,82;UBERON:0007284,7.75e-07,82|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0.984968464614303,0.408001382488506,1.25381888591235,22.6126429833535,10.9499540058307,7.40701573609337,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.289693037921647,0,0,14.3692922089383,3.54767035940102,7.64162635530197,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0.860509862246441,0,0,0,0.24666754841716,0,0,0.163461903113459,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.89694817844431,0,0,0,0,0.515281080091258,1.30281799432113,0,0,0.504867548488229,0.0920498986422993,0,0,0.10075209822764,0,0,0,0.286804595389004,0.121973706129595,0,0,0.10366105501537,0.252320850875628,0,0,1.92972281457866,0,0,0,0,0.168584690078102,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=S | |||
|UniProt=Q8TF72,B3KY47 | |||
|association_with_transcript=0bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | |||
|coexpression_cluster_id=C2796 | |||
|description=CAGE_peak_5_at_SHROOM3_5end | |||
|id=chr4:77356248..77356295,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.87e-08!7;CL:0000126!1.87e-08!7;CL:0000127!1.87e-08!7;CL:0002453!1.87e-08!7;CL:0002319!8.51e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0002605;5.26e-11;3!CL:0000064;1.00e-10;3!CL:0000067;1.00e-10;3!CL:0005012;1.00e-10;3!CL:0002304;1.00e-10;3!CL:0002586;1.16e-10;3!CL:0002319;7.22e-10;25!CL:0000149;4.40e-08;4!CL:0000128;1.10e-07;7!CL:0000126;1.10e-07;7!CL:0000127;1.10e-07;7!CL:0000047;1.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,5.46e-11,3;CL:0000064,1.04e-10,3;CL:0000067,1.04e-10,3;CL:0005012,1.04e-10,3;CL:0002304,1.04e-10,3;CL:0002586,1.07e-10,3;CL:0000133,1.39e-10,59;CL:0002319,8.81e-10,25;CL:0000047,1.50e-09,8;CL:0000149,4.16e-08,4;CL:0000221,5.04e-08,72;CL:0000128,1.22e-07,7;CL:0000126,1.22e-07,7;CL:0000127,1.22e-07,7;CL:0002453,1.22e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000133;6.26e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;7.86e-08;2!DOID:299;6.64e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,7.88e-08,2;DOID:299,6.65e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0005743!9.25e-16!86;UBERON:0003075!1.42e-15!86;UBERON:0007284!1.42e-15!86;UBERON:0002346!5.98e-15!90;UBERON:0004121!9.25e-14!169;UBERON:0000924!1.71e-13!173;UBERON:0006601!1.71e-13!173;UBERON:0000073!6.52e-13!94;UBERON:0001016!6.52e-13!94;UBERON:0001017!6.57e-13!82;UBERON:0000153!1.92e-12!129;UBERON:0007811!1.92e-12!129;UBERON:0007023!1.97e-11!115;UBERON:0000033!3.41e-11!123;UBERON:0003056!1.24e-10!61;UBERON:0007625!3.08e-09!11;UBERON:0001049!7.25e-09!57;UBERON:0005068!7.25e-09!57;UBERON:0006241!7.25e-09!57;UBERON:0007135!7.25e-09!57;UBERON:0000062!1.15e-07!511;UBERON:0000955!1.67e-07!69;UBERON:0006238!1.67e-07!69;UBERON:0003080!8.86e-07!42;UBERON:0001893!9.58e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.19e-22;11!UBERON:0000970;4.85e-17;20!UBERON:0002104;4.14e-16;21!UBERON:0001456;4.14e-16;21!UBERON:0000019;4.79e-15;19!UBERON:0000047;4.79e-15;19!UBERON:0004088;4.79e-15;19!UBERON:0010230;4.79e-15;19!UBERON:0000020;1.72e-14;23!UBERON:0001032;8.79e-14;24!UBERON:0004456;8.79e-14;24!UBERON:0000488;1.43e-13;4!UBERON:0001778;1.00e-10;3!UBERON:0001775;1.00e-10;3!UBERON:0001781;1.16e-10;3!UBERON:0001782;1.16e-10;3!UBERON:0000966;1.63e-10;5!UBERON:0005388;1.63e-10;5!UBERON:0001802;1.63e-10;5!UBERON:0010371;5.93e-10;31!UBERON:0002203;4.90e-09;6!UBERON:0001768;4.90e-09;6!UBERON:0002200;4.90e-09;6!UBERON:0001801;8.95e-08;14!UBERON:0001829;3.91e-07;2!UBERON:0000341;5.08e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.40e-22,11;UBERON:0000970,4.04e-16,21;UBERON:0002104,4.04e-16,21;UBERON:0001456,2.53e-15,22;UBERON:0000019,3.43e-14,20;UBERON:0000047,3.43e-14,20;UBERON:0010312,3.43e-14,20;UBERON:0004088,3.43e-14,20;UBERON:0010230,3.43e-14,20;UBERON:0003072,3.43e-14,20;UBERON:0004128,3.43e-14,20;UBERON:0003071,3.43e-14,20;UBERON:0000020,8.60e-14,24;UBERON:0001032,8.60e-14,24;UBERON:0004456,8.60e-14,24;UBERON:0000488,1.33e-13,4;UBERON:0001778,1.04e-10,3;UBERON:0001775,1.04e-10,3;UBERON:0001782,1.07e-10,3;UBERON:0005424,1.07e-10,3;UBERON:0005085,3.58e-10,31;UBERON:0002203,4.67e-09,6;UBERON:0001768,4.67e-09,6;UBERON:0002200,4.67e-09,6;UBERON:0000966,7.63e-09,6;UBERON:0005388,7.63e-09,6;UBERON:0001802,7.63e-09,6;UBERON:0001781,4.16e-08,4;UBERON:0001444,4.39e-08,49;UBERON:0000153,6.29e-08,62;UBERON:0007811,6.29e-08,62;UBERON:0001801,9.97e-08,14;UBERON:0001829,2.92e-07,2;UBERON:0001048,4.14e-07,160;UBERON:0004121,5.52e-07,171;UBERON:0000924,5.52e-07,171;UBERON:0006601,5.52e-07,171;UBERON:0003056,5.78e-07,61;UBERON:0000341,5.93e-07,2;UBERON:0003075,7.75e-07,82;UBERON:0007284,7.75e-07,82 | |||
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|short_description=p5@SHROOM3 | |||
}} |
Revision as of 11:47, 13 September 2013
Short description: | p5@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SHROOM3_5end |
Coexpression cluster: | C2796_Astrocyte_signet_Ciliary_small_Neural_anaplastic_Lens |
Association with transcript: | 0bp_to_ENST00000296043, NM_020859, uc011cbx.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72B3KY47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 5.46e-11 | 3 |
ciliated cell | 1.04e-10 | 3 |
ciliated epithelial cell | 1.04e-10 | 3 |
multi-ciliated epithelial cell | 1.04e-10 | 3 |
non-pigmented ciliary epithelial cell | 1.04e-10 | 3 |
retinal pigment epithelial cell | 1.07e-10 | 3 |
neurectodermal cell | 1.39e-10 | 59 |
neural cell | 8.81e-10 | 25 |
neuronal stem cell | 1.50e-09 | 8 |
visual pigment cell | 4.16e-08 | 4 |
ectodermal cell | 5.04e-08 | 72 |
oligodendrocyte | 1.22e-07 | 7 |
macroglial cell | 1.22e-07 | 7 |
astrocyte | 1.22e-07 | 7 |
oligodendrocyte precursor cell | 1.22e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 7.88e-08 | 2 |
adenocarcinoma | 6.65e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.