FFCP PHASE1:Mm9::chr18:80476177..80476182,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr18:80476177..80476182,+|id=chr18:80476177..80476182,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002027,6.12e-34,3;CL:0002006,6.12e-34,3;CL:0002024,6.12e-34,3;CL:0000553,2.19e-17,6;CL:0000556,2.19e-17,6;CL:0000213,5.53e-12,1;CL:0002078,5.53e-12,1;CL:0000115,5.53e-12,1;CL:0002262,5.53e-12,1;CL:1000398,5.53e-12,1;CL:0000050,7.86e-12,9;CL:0000839,2.18e-08,13;CL:0000763,6.35e-07,16|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000466!2.54e-10!79;UBERON:0005177!6.21e-10!85;UBERON:0009569!1.91e-09!66;UBERON:0005172!3.46e-08!49;UBERON:0005173!3.46e-08!49;UBERON:0002417!3.46e-08!49;UBERON:0000916!3.46e-08!49;UBERON:0001041!4.77e-08!92;UBERON:0000077!7.70e-08!97;UBERON:0002100!4.71e-07!98;UBERON:0003104!4.89e-07!131;UBERON:0009142!4.89e-07!131;UBERON:0002107!7.20e-07!22;UBERON:0007499!7.20e-07!22;UBERON:0006925!7.20e-07!22;UBERON:0009497!7.20e-07!22;UBERON:0000015!7.20e-07!22;UBERON:0002423!7.20e-07!22;UBERON:0006235!7.20e-07!22;UBERON:0008835!7.20e-07!22;UBERON:0003894!7.20e-07!22;UBERON:0004161!7.20e-07!22;UBERON:0008836!7.20e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0002394,5.53e-12,1;UBERON:0001281,5.53e-12,1;UBERON:0000353,5.53e-12,1;UBERON:0003497,5.53e-12,1;UBERON:0003909,5.53e-12,1;UBERON:0003928,5.53e-12,1;UBERON:0003835,5.53e-12,1;UBERON:0003513,5.53e-12,1;UBERON:0001280,5.53e-12,1;UBERON:0004647,5.53e-12,1;UBERON:0002294,5.53e-12,1;UBERON:0001173,5.53e-12,1;UBERON:0004912,5.53e-12,1;UBERON:0005171,5.53e-12,1;UBERON:0002106,2.89e-08,6;UBERON:0004457,2.89e-08,6;UBERON:0000042,2.89e-08,6;UBERON:0004854,2.89e-08,6;UBERON:0009034,2.89e-08,6;UBERON:0002095,2.89e-08,6;UBERON:0004782,2.89e-08,6;UBERON:0003281,2.89e-08,6;UBERON:0009664,2.89e-08,6;UBERON:0002296,2.89e-08,6;UBERON:0005602,2.89e-08,6;UBERON:0001179,2.89e-08,6;UBERON:0006293,2.89e-08,6;UBERON:0002371,6.35e-07,16|phase1_expression=0,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0.70219357896598,0,0,0,0.0874204024189974,3.99731714178795,4.25198061518635,1.39912375625629,0.157731082679119,0.137114433605739,0,0.17008658030214,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0.294628585473668,0.284743361598206,0.186399445825301,0.075726193333184,0,1.15945795480671,0,0,0,0.649776417447669,0,0,0,0.259786004602869,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0.461230994512117,0,0.470354828542819,0,0,0,0,0,0.220841518460394,0.969750506270444,0,0,0.209446706813455,0,0,0,0,0,0,0.125654352112864,0,0,0,0.162241263067758,0.101839363850316,0.248813941220186,0.758168275301024,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.284163499395593,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0.308534225774757,0,0,0,0.16455984991348,0,0,0,0,0,0,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0.140271639780637,0.189709611372772,0.147610147979602,0.31399745568275,0,0.889357881261447,0.333690211432188,0,0.224862112384854,0.202860121388503,0,0.25462585178142,0.863088412352432,0.324270453550071,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0.252578877947112,0.538192240565737,0.482443521363367,0.184753190166605,0,0,0.169745085775188,0.469380496577004,0.502518772325447,0.238043640886014,0,0,0.44292937929755,0.478364305972461,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0.491764273019036,0,0,0.234423373184406,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0.922305443831782,0,0.727067458955011,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0.329098041204242,0,0,0,0,0.16488625294148,0.161464426695906,0,0.238744688006273,0.164140899745061,0,0,0.341741761595705,0,0.185194527369712,1.31857919903284,1.77702496037333,0.686334519619568,0,0,0,0,0,0,0.108005340821801,0,0.436725127492355,0.269728692769641,0.330613822901344,0.523511883968059,0.259229946583586,0,0,0.299033092087958,0,0.194451188344048,0.129159823477731,0.168956125490778,0.234714477291508,0,0,0,0.288030006257865,0.316011120628178,0.405450430580328,0,0,0,0,0.240390899039938,0.147689527174577,0,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0.19318959403219,0,0,0.214368379079066,0,0,0,0,0.343706364687375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0.64183841918363,0.252697211763798,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0,1.02860775715625,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0.169229215783353,0.73171189149109,0.526139422875686,0.543216455383447,0,0,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0.233931608445408,0,0,0,0|short_description=p@chr18:80476177..80476182,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr18:80476177..80476182,+ | |||
|id=chr18:80476177..80476182,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002027,6.12e-34,3;CL:0002006,6.12e-34,3;CL:0002024,6.12e-34,3;CL:0000553,2.19e-17,6;CL:0000556,2.19e-17,6;CL:0000213,5.53e-12,1;CL:0002078,5.53e-12,1;CL:0000115,5.53e-12,1;CL:0002262,5.53e-12,1;CL:1000398,5.53e-12,1;CL:0000050,7.86e-12,9;CL:0000839,2.18e-08,13;CL:0000763,6.35e-07,16 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000466!2.54e-10!79;UBERON:0005177!6.21e-10!85;UBERON:0009569!1.91e-09!66;UBERON:0005172!3.46e-08!49;UBERON:0005173!3.46e-08!49;UBERON:0002417!3.46e-08!49;UBERON:0000916!3.46e-08!49;UBERON:0001041!4.77e-08!92;UBERON:0000077!7.70e-08!97;UBERON:0002100!4.71e-07!98;UBERON:0003104!4.89e-07!131;UBERON:0009142!4.89e-07!131;UBERON:0002107!7.20e-07!22;UBERON:0007499!7.20e-07!22;UBERON:0006925!7.20e-07!22;UBERON:0009497!7.20e-07!22;UBERON:0000015!7.20e-07!22;UBERON:0002423!7.20e-07!22;UBERON:0006235!7.20e-07!22;UBERON:0008835!7.20e-07!22;UBERON:0003894!7.20e-07!22;UBERON:0004161!7.20e-07!22;UBERON:0008836!7.20e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,5.53e-12,1;UBERON:0001281,5.53e-12,1;UBERON:0000353,5.53e-12,1;UBERON:0003497,5.53e-12,1;UBERON:0003909,5.53e-12,1;UBERON:0003928,5.53e-12,1;UBERON:0003835,5.53e-12,1;UBERON:0003513,5.53e-12,1;UBERON:0001280,5.53e-12,1;UBERON:0004647,5.53e-12,1;UBERON:0002294,5.53e-12,1;UBERON:0001173,5.53e-12,1;UBERON:0004912,5.53e-12,1;UBERON:0005171,5.53e-12,1;UBERON:0002106,2.89e-08,6;UBERON:0004457,2.89e-08,6;UBERON:0000042,2.89e-08,6;UBERON:0004854,2.89e-08,6;UBERON:0009034,2.89e-08,6;UBERON:0002095,2.89e-08,6;UBERON:0004782,2.89e-08,6;UBERON:0003281,2.89e-08,6;UBERON:0009664,2.89e-08,6;UBERON:0002296,2.89e-08,6;UBERON:0005602,2.89e-08,6;UBERON:0001179,2.89e-08,6;UBERON:0006293,2.89e-08,6;UBERON:0002371,6.35e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0.70219357896598,0,0,0,0.0874204024189974,3.99731714178795,4.25198061518635,1.39912375625629,0.157731082679119,0.137114433605739,0,0.17008658030214,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0.294628585473668,0.284743361598206,0.186399445825301,0.075726193333184,0,1.15945795480671,0,0,0,0.649776417447669,0,0,0,0.259786004602869,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0.461230994512117,0,0.470354828542819,0,0,0,0,0,0.220841518460394,0.969750506270444,0,0,0.209446706813455,0,0,0,0,0,0,0.125654352112864,0,0,0,0.162241263067758,0.101839363850316,0.248813941220186,0.758168275301024,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.284163499395593,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0.308534225774757,0,0,0,0.16455984991348,0,0,0,0,0,0,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0.140271639780637,0.189709611372772,0.147610147979602,0.31399745568275,0,0.889357881261447,0.333690211432188,0,0.224862112384854,0.202860121388503,0,0.25462585178142,0.863088412352432,0.324270453550071,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0.252578877947112,0.538192240565737,0.482443521363367,0.184753190166605,0,0,0.169745085775188,0.469380496577004,0.502518772325447,0.238043640886014,0,0,0.44292937929755,0.478364305972461,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0.491764273019036,0,0,0.234423373184406,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0.922305443831782,0,0.727067458955011,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0.329098041204242,0,0,0,0,0.16488625294148,0.161464426695906,0,0.238744688006273,0.164140899745061,0,0,0.341741761595705,0,0.185194527369712,1.31857919903284,1.77702496037333,0.686334519619568,0,0,0,0,0,0,0.108005340821801,0,0.436725127492355,0.269728692769641,0.330613822901344,0.523511883968059,0.259229946583586,0,0,0.299033092087958,0,0.194451188344048,0.129159823477731,0.168956125490778,0.234714477291508,0,0,0,0.288030006257865,0.316011120628178,0.405450430580328,0,0,0,0,0.240390899039938,0.147689527174577,0,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0.19318959403219,0,0,0.214368379079066,0,0,0,0,0.343706364687375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0.64183841918363,0.252697211763798,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0,1.02860775715625,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0.169229215783353,0.73171189149109,0.526139422875686,0.543216455383447,0,0,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr18:80476177..80476182,+ | |||
}} | |||
Revision as of 16:49, 13 September 2013
| Short description: | p@chr18:80476177..80476182, + |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr18:80476177..80476182, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CD9-positive, CD41-positive megakaryocyte cell | 6.12e-34 | 3 |
| Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 6.12e-34 | 3 |
| Kit-positive megakaryocyte progenitor cell | 6.12e-34 | 3 |
| megakaryocyte progenitor cell | 2.19e-17 | 6 |
| megakaryocyte | 2.19e-17 | 6 |
| lining cell | 5.53e-12 | 1 |
| meso-epithelial cell | 5.53e-12 | 1 |
| endothelial cell | 5.53e-12 | 1 |
| endothelial cell of sinusoid | 5.53e-12 | 1 |
| endothelial cell of hepatic sinusoid | 5.53e-12 | 1 |
| megakaryocyte-erythroid progenitor cell | 7.86e-12 | 9 |
| myeloid lineage restricted progenitor cell | 2.18e-08 | 13 |
| myeloid cell | 6.35e-07 | 16 |
| Ontology term | p-value | n |
|---|---|---|
| bile duct | 5.53e-12 | 1 |
| hepatic sinusoid | 5.53e-12 | 1 |
| parenchyma | 5.53e-12 | 1 |
| abdomen blood vessel | 5.53e-12 | 1 |
| sinusoid | 5.53e-12 | 1 |
| digestive system duct | 5.53e-12 | 1 |
| abdominal segment blood vessel | 5.53e-12 | 1 |
| trunk blood vessel | 5.53e-12 | 1 |
| liver parenchyma | 5.53e-12 | 1 |
| liver lobule | 5.53e-12 | 1 |
| biliary system | 5.53e-12 | 1 |
| biliary tree | 5.53e-12 | 1 |
| biliary bud | 5.53e-12 | 1 |
| hepatic duct | 5.53e-12 | 1 |
| spleen | 2.89e-08 | 6 |
| cavity lining | 2.89e-08 | 6 |
| serous membrane | 2.89e-08 | 6 |
| gastrointestinal system mesentery | 2.89e-08 | 6 |
| stomach region | 2.89e-08 | 6 |
| mesentery | 2.89e-08 | 6 |
| gastrointestinal system serosa | 2.89e-08 | 6 |
| mesentery of stomach | 2.89e-08 | 6 |
| gut mesentery | 2.89e-08 | 6 |
| dorsal mesentery | 2.89e-08 | 6 |
| dorsal mesogastrium | 2.89e-08 | 6 |
| peritoneal cavity | 2.89e-08 | 6 |
| spleen primordium | 2.89e-08 | 6 |
| bone marrow | 6.35e-07 | 16 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
