FFCP PHASE1:Hg19::chr8:143833918..143833960,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=137797|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25215|TSSclassifier=S|UniProt=Q6UXB3,F1T0L0|association_with_transcript=0bp_to_ENST00000359228,NM_205545,uc003ywz.2_5end|coexpression_cluster_id=C92|description=CAGE_peak_1_at_LYPD2_5end|id=chr8:143833918..143833960,-|ontology_enrichment_celltype=CL:0002057!1.21e-30!42;CL:0000860!1.73e-30!45;CL:0002009!2.19e-17!65;CL:0002194!2.35e-17!63;CL:0000576!2.35e-17!63;CL:0000040!2.35e-17!63;CL:0000559!2.35e-17!63;CL:0000766!1.59e-15!76;CL:0000557!7.46e-15!71;CL:0000839!2.16e-14!70;CL:0002087!5.41e-09!119;CL:0000738!2.19e-08!140;CL:0002076!3.04e-08!43;CL:0000223!3.35e-07!59;CL:0000763!3.41e-07!112;CL:0000049!3.41e-07!112;CL:0002031!7.85e-07!124;CL:0002393!8.99e-07!9;CL:0002397!8.99e-07!9|ontology_enrichment_celltype_v019=CL:0000860;8.43e-30;33!CL:0002057;8.43e-30;33!CL:0000576;3.37e-21;48!CL:0000473;1.08e-20;39!CL:0000234;1.08e-20;39!CL:0000766;3.16e-12;69!CL:0000875;8.92e-08;3!CL:0002396;8.92e-08;3!CL:0000767;5.62e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,4.40e-40,42;CL:0002057,4.40e-40,42;CL:0000473,8.64e-34,48;CL:0000234,8.64e-34,48;CL:0002194,4.99e-25,59;CL:0000576,4.99e-25,59;CL:0000040,4.99e-25,59;CL:0000559,4.99e-25,59;CL:0002009,6.64e-24,61;CL:0000766,1.18e-23,72;CL:0000839,2.14e-21,66;CL:0000557,6.13e-21,67;CL:0000763,1.67e-12,108;CL:0000049,1.67e-12,108;CL:0002087,4.60e-11,115;CL:0000738,2.73e-10,136;CL:0002393,1.99e-08,9;CL:0002397,1.99e-08,9;CL:0002031,6.17e-08,120;CL:0000875,8.93e-08,3;CL:0002396,8.93e-08,3;CL:0000767,5.40e-07,3|ontology_enrichment_development_v019=CL:0002057;4.40e-29;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.58e-19!102;UBERON:0003061!3.58e-19!102;UBERON:0002193!5.73e-17!112;UBERON:0002371!7.89e-12!80;UBERON:0001474!3.33e-10!86;UBERON:0000178!1.13e-09!15;UBERON:0000179!1.13e-09!15;UBERON:0000463!1.13e-09!15;UBERON:0002405!2.03e-09!115;UBERON:0004765!1.38e-07!101;UBERON:0001434!1.38e-07!101;UBERON:0007023!1.69e-07!115;UBERON:0000926!6.05e-07!448;UBERON:0004120!6.05e-07!448;UBERON:0006603!6.05e-07!448|ontology_enrichment_uberon_v019=UBERON:0000178;5.48e-13;15!UBERON:0000179;5.48e-13;15!UBERON:0000463;5.48e-13;15!UBERON:0004921;4.95e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.19e-27,98;UBERON:0003061,1.19e-27,98;UBERON:0002193,2.02e-25,108;UBERON:0002371,2.20e-17,76;UBERON:0002405,3.93e-16,93;UBERON:0001474,1.85e-15,82;UBERON:0004765,2.62e-13,90;UBERON:0000178,5.02e-13,15;UBERON:0000179,5.02e-13,15;UBERON:0000463,5.02e-13,15;UBERON:0003081,1.72e-11,203;UBERON:0001434,3.97e-11,100;UBERON:0000922,1.20e-07,592;UBERON:0002050,1.45e-07,564;UBERON:0000923,2.76e-07,560;UBERON:0010316,2.76e-07,560;UBERON:0005291,2.76e-07,560;UBERON:0006598,2.76e-07,560;UBERON:0010317,2.76e-07,560;UBERON:0002532,2.76e-07,560;UBERON:0005423,3.81e-07,581;UBERON:0000974,7.39e-07,10;UBERON:0006562,9.69e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3080281813518,6.52509976765262,7.7408061658038,0.919421224478927,0,0,0,0,0,0,0.200544447470142,0,0,0,0,2.32637182047304,0.377875943688809,5.33684934613196,2.32429036905685,1.23350366406548,5.88442104700697,3.45230870786581,1.7931249457037,8.51336027598907,2.75796544589295,1.29096936716765,5.41705946377367,2.25890807451126,0.818718450173537,3.82029923556644,5.20342617030534,1.92557416245656,12.1474053901818,2.96866170168044,2.19410023383795,7.2458207590558,1.16083695451434,0.56738522469114,2.4912889959823,2.00998932205395,2.60741459210101,5.86409880703815,2.42159801053347,1.10483290796269,4.74693581161327,9.71774317034932,27.8511632954207,5.66078342872615,0,0,0,315.224094577821,393.656104176999,130.604869941713,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.903450714466637,0.127986611154418,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0.728590576585084,0.741568885568859,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,8.97815601364729,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8835706384116,4.74571241800957,2.02782359826544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38406458856542,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,1.95227036798582,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.960950336825531,1.53135254993501,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=137797 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25215 | |||
|TSSclassifier=S | |||
|UniProt=Q6UXB3,F1T0L0 | |||
|association_with_transcript=0bp_to_ENST00000359228,NM_205545,uc003ywz.2_5end | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_1_at_LYPD2_5end | |||
|id=chr8:143833918..143833960,- | |||
|ontology_enrichment_celltype=CL:0002057!1.21e-30!42;CL:0000860!1.73e-30!45;CL:0002009!2.19e-17!65;CL:0002194!2.35e-17!63;CL:0000576!2.35e-17!63;CL:0000040!2.35e-17!63;CL:0000559!2.35e-17!63;CL:0000766!1.59e-15!76;CL:0000557!7.46e-15!71;CL:0000839!2.16e-14!70;CL:0002087!5.41e-09!119;CL:0000738!2.19e-08!140;CL:0002076!3.04e-08!43;CL:0000223!3.35e-07!59;CL:0000763!3.41e-07!112;CL:0000049!3.41e-07!112;CL:0002031!7.85e-07!124;CL:0002393!8.99e-07!9;CL:0002397!8.99e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.43e-30;33!CL:0002057;8.43e-30;33!CL:0000576;3.37e-21;48!CL:0000473;1.08e-20;39!CL:0000234;1.08e-20;39!CL:0000766;3.16e-12;69!CL:0000875;8.92e-08;3!CL:0002396;8.92e-08;3!CL:0000767;5.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.40e-40,42;CL:0002057,4.40e-40,42;CL:0000473,8.64e-34,48;CL:0000234,8.64e-34,48;CL:0002194,4.99e-25,59;CL:0000576,4.99e-25,59;CL:0000040,4.99e-25,59;CL:0000559,4.99e-25,59;CL:0002009,6.64e-24,61;CL:0000766,1.18e-23,72;CL:0000839,2.14e-21,66;CL:0000557,6.13e-21,67;CL:0000763,1.67e-12,108;CL:0000049,1.67e-12,108;CL:0002087,4.60e-11,115;CL:0000738,2.73e-10,136;CL:0002393,1.99e-08,9;CL:0002397,1.99e-08,9;CL:0002031,6.17e-08,120;CL:0000875,8.93e-08,3;CL:0002396,8.93e-08,3;CL:0000767,5.40e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;4.40e-29;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.58e-19!102;UBERON:0003061!3.58e-19!102;UBERON:0002193!5.73e-17!112;UBERON:0002371!7.89e-12!80;UBERON:0001474!3.33e-10!86;UBERON:0000178!1.13e-09!15;UBERON:0000179!1.13e-09!15;UBERON:0000463!1.13e-09!15;UBERON:0002405!2.03e-09!115;UBERON:0004765!1.38e-07!101;UBERON:0001434!1.38e-07!101;UBERON:0007023!1.69e-07!115;UBERON:0000926!6.05e-07!448;UBERON:0004120!6.05e-07!448;UBERON:0006603!6.05e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.48e-13;15!UBERON:0000179;5.48e-13;15!UBERON:0000463;5.48e-13;15!UBERON:0004921;4.95e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.19e-27,98;UBERON:0003061,1.19e-27,98;UBERON:0002193,2.02e-25,108;UBERON:0002371,2.20e-17,76;UBERON:0002405,3.93e-16,93;UBERON:0001474,1.85e-15,82;UBERON:0004765,2.62e-13,90;UBERON:0000178,5.02e-13,15;UBERON:0000179,5.02e-13,15;UBERON:0000463,5.02e-13,15;UBERON:0003081,1.72e-11,203;UBERON:0001434,3.97e-11,100;UBERON:0000922,1.20e-07,592;UBERON:0002050,1.45e-07,564;UBERON:0000923,2.76e-07,560;UBERON:0010316,2.76e-07,560;UBERON:0005291,2.76e-07,560;UBERON:0006598,2.76e-07,560;UBERON:0010317,2.76e-07,560;UBERON:0002532,2.76e-07,560;UBERON:0005423,3.81e-07,581;UBERON:0000974,7.39e-07,10;UBERON:0006562,9.69e-07,11 | |||
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|short_description=p1@LYPD2 | |||
}} |
Revision as of 04:04, 14 September 2013
Short description: | p1@LYPD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LYPD2_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 0bp_to_ENST00000359228, NM_205545, uc003ywz.2_5end |
EntrezGene: | LYPD2 |
HGNC: | 25215 |
UniProt: | Q6UXB3F1T0L0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.40e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.40e-40 | 42 |
defensive cell | 8.64e-34 | 48 |
phagocyte | 8.64e-34 | 48 |
monopoietic cell | 4.99e-25 | 59 |
monocyte | 4.99e-25 | 59 |
monoblast | 4.99e-25 | 59 |
promonocyte | 4.99e-25 | 59 |
macrophage dendritic cell progenitor | 6.64e-24 | 61 |
myeloid leukocyte | 1.18e-23 | 72 |
myeloid lineage restricted progenitor cell | 2.14e-21 | 66 |
granulocyte monocyte progenitor cell | 6.13e-21 | 67 |
myeloid cell | 1.67e-12 | 108 |
common myeloid progenitor | 1.67e-12 | 108 |
nongranular leukocyte | 4.60e-11 | 115 |
leukocyte | 2.73e-10 | 136 |
intermediate monocyte | 1.99e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.99e-08 | 9 |
hematopoietic lineage restricted progenitor cell | 6.17e-08 | 120 |
non-classical monocyte | 8.93e-08 | 3 |
CD14-low, CD16-positive monocyte | 8.93e-08 | 3 |
basophil | 5.40e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.19e-27 | 98 |
blood island | 1.19e-27 | 98 |
hemolymphoid system | 2.02e-25 | 108 |
bone marrow | 2.20e-17 | 76 |
immune system | 3.93e-16 | 93 |
bone element | 1.85e-15 | 82 |
skeletal element | 2.62e-13 | 90 |
blood | 5.02e-13 | 15 |
haemolymphatic fluid | 5.02e-13 | 15 |
organism substance | 5.02e-13 | 15 |
lateral plate mesoderm | 1.72e-11 | 203 |
skeletal system | 3.97e-11 | 100 |
embryo | 1.20e-07 | 592 |
embryonic structure | 1.45e-07 | 564 |
germ layer | 2.76e-07 | 560 |
germ layer / neural crest | 2.76e-07 | 560 |
embryonic tissue | 2.76e-07 | 560 |
presumptive structure | 2.76e-07 | 560 |
germ layer / neural crest derived structure | 2.76e-07 | 560 |
epiblast (generic) | 2.76e-07 | 560 |
developing anatomical structure | 3.81e-07 | 581 |
neck | 7.39e-07 | 10 |
pharynx | 9.69e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.