FFCP PHASE1:Mm9::chr9:66891676..66891752,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22003|HGNC=|UniProt=G5E8R2,B7ZNL3|association_with_transcript=0bp_to_ENSMUST00000113696,NM_001164252,NM_001164253,NM_001164254,NM_001164256,uc012gvr.1,uc012gvs.1,uc012gvv.1,uc012gvx.1_5end|description=CAGE_peak_3_at_Tpm1_5end|id=chr9:66891676..66891752,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.30e-10!52;UBERON:0005068!1.30e-10!52;UBERON:0006241!1.30e-10!52;UBERON:0007135!1.30e-10!52;UBERON:0000955!1.70e-09!50;UBERON:0006238!1.70e-09!50;UBERON:0002020!2.12e-09!34;UBERON:0000073!2.77e-09!75;UBERON:0001016!2.77e-09!75;UBERON:0002346!3.81e-09!71;UBERON:0003075!3.81e-09!71;UBERON:0007284!3.81e-09!71;UBERON:0002616!4.74e-09!49;UBERON:0004121!5.32e-09!102;UBERON:0000924!5.32e-09!102;UBERON:0006601!5.32e-09!102;UBERON:0001017!2.05e-08!73;UBERON:0005743!2.05e-08!73;UBERON:0002021!7.04e-08!10;UBERON:0000411!7.04e-08!10;UBERON:0001950!7.04e-08!10;UBERON:0000033!1.13e-07!63;UBERON:0004923!1.43e-07!24;UBERON:0002791!1.61e-07!29;UBERON:0003528!1.61e-07!29;UBERON:0001893!1.61e-07!29;UBERON:0000956!6.24e-07!21;UBERON:0001869!6.24e-07!21;UBERON:0000203!6.24e-07!21;UBERON:0000344!6.28e-07!15;UBERON:0003080!6.72e-07!40;UBERON:0000064!7.54e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.59e-11,54;UBERON:0001049,1.30e-10,52;UBERON:0005068,1.30e-10,52;UBERON:0006241,1.30e-10,52;UBERON:0007135,1.30e-10,52;UBERON:0002020,2.12e-09,34;UBERON:0011216,2.71e-09,194;UBERON:0001016,2.77e-09,75;UBERON:0000955,8.50e-09,47;UBERON:0006238,8.50e-09,47;UBERON:0001017,2.05e-08,73;UBERON:0002616,2.33e-08,46;UBERON:0002021,7.04e-08,10;UBERON:0000411,7.04e-08,10;UBERON:0001950,7.04e-08,10;UBERON:0002346,1.20e-07,64;UBERON:0003075,1.20e-07,64;UBERON:0007284,1.20e-07,64;UBERON:0004923,1.43e-07,24;UBERON:0004121,1.53e-07,95;UBERON:0000924,1.53e-07,95;UBERON:0006601,1.53e-07,95;UBERON:0003528,1.61e-07,29;UBERON:0002791,1.61e-07,29;UBERON:0001893,1.61e-07,29;UBERON:0010371,3.17e-07,73;UBERON:0000160,4.09e-07,31;UBERON:0000956,6.24e-07,21;UBERON:0001869,6.24e-07,21;UBERON:0000203,6.24e-07,21;UBERON:0000344,6.28e-07,15;UBERON:0003080,6.72e-07,40|phase1_expression=36.0334905985786,68.3991798973148,61.4248973175874,51.4189159221611,47.0841986149566,28.0358384092856,29.9024179962273,15.6239221364307,6.75785866328,3.27690336850791,16.4369249496485,18.3475965689274,11.1280474455284,18.7953865200844,29.646768801594,36.6480233975585,49.6688933470984,8.99067171270977,7.95263714913285,6.79023442876848,21.5159524082207,13.7021512657222,10.7091913546964,31.6784997130945,35.3290292843442,46.5127890933166,37.9070556619986,36.845580789287,36.4844965356238,38.0565495937495,35.6986122155041,12.065582795733,9.22597181376855,15.8481681015439,32.0625297923915,31.2521133273966,32.2587582894543,5.4409111995798,4.6880120671428,1.57057123192139,1.17646297606203,1.36609096991689,4.36959317728038,28.9562681343828,24.7359712175616,34.3232426542344,32.0780451182696,16.3518867285335,29.4379484864192,20.9984291000226,27.4373386385711,12.9377307928474,5.70460860596304,13.7818806982155,10.4189077734164,20.5807548828758,31.5186783932632,21.1425557833751,23.0640765379941,19.5726662330652,22.1840991227163,29.4794742900145,35.5717918444456,19.7977937801908,14.8329954385046,14.209602298922,26.664409836138,23.0530983192933,22.9154043201736,26.3261579746797,23.135745748652,42.5619966761667,47.7076048455485,22.1708346579067,22.4278402182673,16.5459381589804,20.9220173898839,51.713371924501,43.7778619780294,30.597618753405,31.5632370428313,31.2548022334056,40.2023518561989,14.069065250792,31.9348337853533,33.8822873294718,37.301380369365,33.1791013569035,50.5093709532338,57.5099572412638,20.5803786978191,11.185510400758,44.1981366910038,8.09554787456726,12.9955283489534,13.8888335000174,19.3813299781818,22.4968025803036,24.4198844326697,24.3804306412135,20.4222958676187,6.41632387071589,5.09610479413291,7.11066703153331,12.3399893376392,11.9079136773296,9.60496445528088,22.2658565452167,14.7594593678888,27.6102378660574,23.7674897669606,27.7063585264048,33.2086316048724,38.4342733409188,30.8082412695547,32.4219805630563,30.1577860635936,17.7857209011491,12.3845477272982,23.7797269422691,22.3049933644997,25.6983884161668,33.550517019262,60.8984057784018,49.8483162216023,39.5958435573317,24.2026551501959,6.59893004092748,16.7732699736445,39.5447288028732,29.2800385803921,21.4868942112998,63.4458768701809,83.3632390896878,49.6613426497349,45.9142774481754,15.8869407606493,20.7759640918855,8.08712826987759,6.94458124425364,18.3469824577412,22.5304062344803,22.147641966058,22.3043130396858,25.5817236808993,25.62274405697,23.4254311399322,13.7112786491678,28.670543060068,27.7985937846694,28.5040821145597,25.4267049615987,23.9120634334014,23.3328951569852,22.6360350048738,17.3159812132089,7.72434506044558,6.69104558498259,10.2298859782413,10.9776659443816,7.97388603935727,7.74266864282364,11.8372367792605,10.8220327461072,11.415766353666,7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| ||
|EntrezGene=22003 | |||
|HGNC= | |||
|UniProt=G5E8R2,B7ZNL3 | |||
|association_with_transcript=0bp_to_ENSMUST00000113696,NM_001164252,NM_001164253,NM_001164254,NM_001164256,uc012gvr.1,uc012gvs.1,uc012gvv.1,uc012gvx.1_5end | |||
|description=CAGE_peak_3_at_Tpm1_5end | |||
|id=chr9:66891676..66891752,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.30e-10!52;UBERON:0005068!1.30e-10!52;UBERON:0006241!1.30e-10!52;UBERON:0007135!1.30e-10!52;UBERON:0000955!1.70e-09!50;UBERON:0006238!1.70e-09!50;UBERON:0002020!2.12e-09!34;UBERON:0000073!2.77e-09!75;UBERON:0001016!2.77e-09!75;UBERON:0002346!3.81e-09!71;UBERON:0003075!3.81e-09!71;UBERON:0007284!3.81e-09!71;UBERON:0002616!4.74e-09!49;UBERON:0004121!5.32e-09!102;UBERON:0000924!5.32e-09!102;UBERON:0006601!5.32e-09!102;UBERON:0001017!2.05e-08!73;UBERON:0005743!2.05e-08!73;UBERON:0002021!7.04e-08!10;UBERON:0000411!7.04e-08!10;UBERON:0001950!7.04e-08!10;UBERON:0000033!1.13e-07!63;UBERON:0004923!1.43e-07!24;UBERON:0002791!1.61e-07!29;UBERON:0003528!1.61e-07!29;UBERON:0001893!1.61e-07!29;UBERON:0000956!6.24e-07!21;UBERON:0001869!6.24e-07!21;UBERON:0000203!6.24e-07!21;UBERON:0000344!6.28e-07!15;UBERON:0003080!6.72e-07!40;UBERON:0000064!7.54e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.59e-11,54;UBERON:0001049,1.30e-10,52;UBERON:0005068,1.30e-10,52;UBERON:0006241,1.30e-10,52;UBERON:0007135,1.30e-10,52;UBERON:0002020,2.12e-09,34;UBERON:0011216,2.71e-09,194;UBERON:0001016,2.77e-09,75;UBERON:0000955,8.50e-09,47;UBERON:0006238,8.50e-09,47;UBERON:0001017,2.05e-08,73;UBERON:0002616,2.33e-08,46;UBERON:0002021,7.04e-08,10;UBERON:0000411,7.04e-08,10;UBERON:0001950,7.04e-08,10;UBERON:0002346,1.20e-07,64;UBERON:0003075,1.20e-07,64;UBERON:0007284,1.20e-07,64;UBERON:0004923,1.43e-07,24;UBERON:0004121,1.53e-07,95;UBERON:0000924,1.53e-07,95;UBERON:0006601,1.53e-07,95;UBERON:0003528,1.61e-07,29;UBERON:0002791,1.61e-07,29;UBERON:0001893,1.61e-07,29;UBERON:0010371,3.17e-07,73;UBERON:0000160,4.09e-07,31;UBERON:0000956,6.24e-07,21;UBERON:0001869,6.24e-07,21;UBERON:0000203,6.24e-07,21;UBERON:0000344,6.28e-07,15;UBERON:0003080,6.72e-07,40 | |||
|phase1_expression=36.0334905985786,68.3991798973148,61.4248973175874,51.4189159221611,47.0841986149566,28.0358384092856,29.9024179962273,15.6239221364307,6.75785866328,3.27690336850791,16.4369249496485,18.3475965689274,11.1280474455284,18.7953865200844,29.646768801594,36.6480233975585,49.6688933470984,8.99067171270977,7.95263714913285,6.79023442876848,21.5159524082207,13.7021512657222,10.7091913546964,31.6784997130945,35.3290292843442,46.5127890933166,37.9070556619986,36.845580789287,36.4844965356238,38.0565495937495,35.6986122155041,12.065582795733,9.22597181376855,15.8481681015439,32.0625297923915,31.2521133273966,32.2587582894543,5.4409111995798,4.6880120671428,1.57057123192139,1.17646297606203,1.36609096991689,4.36959317728038,28.9562681343828,24.7359712175616,34.3232426542344,32.0780451182696,16.3518867285335,29.4379484864192,20.9984291000226,27.4373386385711,12.9377307928474,5.70460860596304,13.7818806982155,10.4189077734164,20.5807548828758,31.5186783932632,21.1425557833751,23.0640765379941,19.5726662330652,22.1840991227163,29.4794742900145,35.5717918444456,19.7977937801908,14.8329954385046,14.209602298922,26.664409836138,23.0530983192933,22.9154043201736,26.3261579746797,23.135745748652,42.5619966761667,47.7076048455485,22.1708346579067,22.4278402182673,16.5459381589804,20.9220173898839,51.713371924501,43.7778619780294,30.597618753405,31.5632370428313,31.2548022334056,40.2023518561989,14.069065250792,31.9348337853533,33.8822873294718,37.301380369365,33.1791013569035,50.5093709532338,57.5099572412638,20.5803786978191,11.185510400758,44.1981366910038,8.09554787456726,12.9955283489534,13.8888335000174,19.3813299781818,22.4968025803036,24.4198844326697,24.3804306412135,20.4222958676187,6.41632387071589,5.09610479413291,7.11066703153331,12.3399893376392,11.9079136773296,9.60496445528088,22.2658565452167,14.7594593678888,27.6102378660574,23.7674897669606,27.7063585264048,33.2086316048724,38.4342733409188,30.8082412695547,32.4219805630563,30.1577860635936,17.7857209011491,12.3845477272982,23.7797269422691,22.3049933644997,25.6983884161668,33.550517019262,60.8984057784018,49.8483162216023,39.5958435573317,24.2026551501959,6.59893004092748,16.7732699736445,39.5447288028732,29.2800385803921,21.4868942112998,63.4458768701809,83.3632390896878,49.6613426497349,45.9142774481754,15.8869407606493,20.7759640918855,8.08712826987759,6.94458124425364,18.3469824577412,22.5304062344803,22.147641966058,22.3043130396858,25.5817236808993,25.62274405697,23.4254311399322,13.7112786491678,28.670543060068,27.7985937846694,28.5040821145597,25.4267049615987,23.9120634334014,23.3328951569852,22.6360350048738,17.3159812132089,7.72434506044558,6.69104558498259,10.2298859782413,10.9776659443816,7.97388603935727,7.74266864282364,11.8372367792605,10.8220327461072,11.415766353666,7.44108623201305,13.1453966685813,13.6615450569588,15.4686258918672,19.5359282254123,19.7807895291888,16.9591985413385,17.344459107993,13.6890547135579,58.2503157522632,30.768479101406,64.1012438988568,33.056320832943,17.4896365438892,15.3276203427889,19.0723842756698,18.7565677899709,23.5720726475563,22.446623881282,44.6057317851841,21.5755630688454,21.3634927480229,32.4299049427076,36.8482124655137,33.2563181202062,43.0114719250641,42.6162324764346,23.139483916276,16.4517858158009,15.7790829942313,16.4957575554705,17.0678188707511,19.2172146499473,24.4725398670876,21.8463019009811,18.839847340965,18.6329717521919,10.3758419480502,29.5315837117486,39.704917012867,33.2795926329584,45.0349469482476,41.0001171579109,26.9903402888305,21.28951417136,27.562988551756,22.5140358814227,21.5652309791032,20.8398930694362,17.4741096944154,18.9434158460334,18.6573310062789,10.1313139486307,33.4403274201554,14.2118558827864,19.8817271259272,21.3878808076737,23.4690248288502,22.7808510120869,22.6141458841713,30.4408490658166,47.9210838082821,49.6080904813256,49.5904330524785,37.6885623846197,39.1994908835583,30.0870041849544,15.0791283939272,13.5976420954677,10.8188140064188,17.6599517635029,36.7660851072044,40.6724552474945,17.7049741006809,9.08895337935743,14.8288863125641,14.8366722832723,14.2179442503647,18.6395662402991,26.9586395639697,22.9291989938954,14.1683745586213,13.151513606009,16.9973744517005,47.2342335140056,18.5941511622832,15.6697731227185,13.6825045857004,13.1976098378028,13.2745138339963,18.2085477116236,21.1626489875326,21.5009790921724,23.328849537581,22.7502009478506,25.8428293168221,22.5390912276053,26.7373033788541,22.7546465713787,23.1920938864997,24.7525303795648,17.0219802876894,19.4465981553815,20.1799546701097,20.1476812929697,23.0542303734956,21.9393645650547,25.0114511315224,17.3545020995322,19.2430800612242,25.6316805745222,11.467476698858,24.403165435339,20.6674466170759,24.1854828961905,23.2776070806116,28.7246574553857,46.3454530241463,43.2040953684488,27.1684700468586,18.9875918526165,23.7048995033231,60.4662746985058,39.2312433559342,40.722514830761,25.836721359066,23.9316983473455,21.1445959920768,51.5522133728161,13.7606157207794,14.2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| |||
|short_description=p3@Tpm1 | |||
}} |
Revision as of 18:35, 14 September 2013
Short description: | p3@Tpm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tpm1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000113696, NM_001164252, NM_001164253, NM_001164254, NM_001164256, uc012gvr.1, uc012gvs.1, uc012gvv.1, uc012gvx.1_5end |
EntrezGene: | Tpm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.59e-11 | 54 |
neural tube | 1.30e-10 | 52 |
neural rod | 1.30e-10 | 52 |
future spinal cord | 1.30e-10 | 52 |
neural keel | 1.30e-10 | 52 |
gray matter | 2.12e-09 | 34 |
organ system subdivision | 2.71e-09 | 194 |
nervous system | 2.77e-09 | 75 |
brain | 8.50e-09 | 47 |
future brain | 8.50e-09 | 47 |
central nervous system | 2.05e-08 | 73 |
regional part of brain | 2.33e-08 | 46 |
occipital lobe | 7.04e-08 | 10 |
visual cortex | 7.04e-08 | 10 |
neocortex | 7.04e-08 | 10 |
neurectoderm | 1.20e-07 | 64 |
neural plate | 1.20e-07 | 64 |
presumptive neural plate | 1.20e-07 | 64 |
organ component layer | 1.43e-07 | 24 |
ectoderm-derived structure | 1.53e-07 | 95 |
ectoderm | 1.53e-07 | 95 |
presumptive ectoderm | 1.53e-07 | 95 |
brain grey matter | 1.61e-07 | 29 |
regional part of telencephalon | 1.61e-07 | 29 |
telencephalon | 1.61e-07 | 29 |
ecto-epithelium | 3.17e-07 | 73 |
intestine | 4.09e-07 | 31 |
cerebral cortex | 6.24e-07 | 21 |
cerebral hemisphere | 6.24e-07 | 21 |
pallium | 6.24e-07 | 21 |
mucosa | 6.28e-07 | 15 |
anterior neural tube | 6.72e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.