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{{MCL_coexpression_mm9
{
|coexpression_dpi_cluster_scores_mean=-0.

Latest revision as of 14:44, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:128184776..128184800,-p@chr10:128184776..128184800
-
Mm9::chr10:128258801..128258829,+p2@Sarnp
Mm9::chr10:19987074..19987116,+p@chr10:19987074..19987116
+
Mm9::chr10:20881210..20881226,-p8@Myb
Mm9::chr10:41472017..41472073,-p@chr10:41472017..41472073
-
Mm9::chr10:41990727..41990747,-p@chr10:41990727..41990747
-
Mm9::chr10:79613557..79613570,+p10@Midn
Mm9::chr11:106249380..106249419,-p2@Icam2
Mm9::chr11:106249420..106249431,-p3@Icam2
Mm9::chr11:106611786..106611800,-p4@Pecam1
Mm9::chr11:115324117..115324139,-p@chr11:115324117..115324139
-
Mm9::chr11:49016787..49016800,+p3@Zfp62
Mm9::chr11:62272010..62272050,-p2@Ncor1
Mm9::chr11:62387979..62388024,+p2@Trpv2
Mm9::chr11:62388025..62388054,+p5@Trpv2
Mm9::chr11:62388075..62388086,+p7@Trpv2
Mm9::chr11:6488230..6488234,+p@chr11:6488230..6488234
+
Mm9::chr11:82880750..82880793,-p@chr11:82880750..82880793
-
Mm9::chr11:98407142..98407159,-p5@Ikzf3
Mm9::chr11:98407164..98407177,-p8@Ikzf3
Mm9::chr11:98407210..98407221,-p7@Ikzf3
Mm9::chr12:114664203..114664241,-p@chr12:114664203..114664241
-
Mm9::chr12:70576554..70576575,-p2@5830428M24Rik
Mm9::chr12:80081745..80081804,-p2@Tmem229b
Mm9::chr13:20277272..20277279,+p17@Elmo1
Mm9::chr13:24508497..24508537,+p5@Cmah
Mm9::chr13:24509523..24509546,+p@chr13:24509523..24509546
+
Mm9::chr13:35281129..35281136,+p@chr13:35281129..35281136
+
Mm9::chr14:79915425..79915501,+p1@Elf1
Mm9::chr15:59451643..59451659,+p@chr15:59451643..59451659
+
Mm9::chr15:80402967..80402990,+p2@Grap2
Mm9::chr15:80541722..80541770,+p1@Tnrc6b
Mm9::chr15:8394164..8394209,-p3@Nipbl
Mm9::chr17:71824625..71824680,-p1@Smchd1
Mm9::chr17:84580073..84580090,-p@chr17:84580073..84580090
-
Mm9::chr17:84586009..84586031,-p@chr17:84586009..84586031
-
Mm9::chr18:24364108..24364133,+p11@Galnt1
Mm9::chr18:34381287..34381313,-p1@Gm10548
Mm9::chr18:34937244..34937300,+p@chr18:34937244..34937300
+
Mm9::chr18:78338818..78338829,-p3@Slc14a1
Mm9::chr18:78338876..78338893,-p2@Slc14a1
Mm9::chr18:78338906..78338915,-p4@Slc14a1
Mm9::chr19:25127044..25127101,+p1@Dock8
Mm9::chr19:8894247..8894280,-p5@Ttc9c
Mm9::chr1:133904862..133904893,+p6@Elk4
Mm9::chr1:133904901..133904934,+p3@Elk4
Mm9::chr1:135586667..135586674,-p6@Lax1
Mm9::chr1:157883011..157883020,-p11@Tor1aip1
Mm9::chr1:173847569..173847603,+p2@Slamf6
Mm9::chr1:38721779..38721790,-p6@Aff3
Mm9::chr1:38721792..38721845,-p1@Aff3
Mm9::chr1:46951476..46951503,+p@chr1:46951476..46951503
+
Mm9::chr1:88256128..88256165,+p1@C130036L24Rik
Mm9::chr2:121332451..121332469,+p2@Wdr76
Mm9::chr2:44166131..44166132,+p@chr2:44166131..44166132
+
Mm9::chr2:6642696..6642730,-p6@Celf2
Mm9::chr3:103190802..103190814,+p@chr3:103190802..103190814
+
Mm9::chr3:130814435..130814449,+p@chr3:130814435..130814449
+
Mm9::chr3:146444315..146444395,-p1@Prkacb
Mm9::chr3:152591853..152591864,+p@chr3:152591853..152591864
+
Mm9::chr3:152593008..152593012,+p@chr3:152593008..152593012
+
Mm9::chr3:60276744..60276759,+p7@Mbnl1
Mm9::chr4:102792072..102792091,+p5@Mier1
Mm9::chr4:123250215..123250231,-p@chr4:123250215..123250231
-
Mm9::chr4:129236052..129236065,-p10@Lck
Mm9::chr4:137439830..137439880,-p1@ENSMUST00000155349
p1@ENSMUST00000156022
Mm9::chr5:105924474..105924494,+p@chr5:105924474..105924494
+
Mm9::chr5:117959951..117959963,+p@chr5:117959951..117959963
+
Mm9::chr5:141476588..141476603,-p2@Card11
Mm9::chr5:37438659..37438696,+p2@Jakmip1
Mm9::chr5:66254802..66254889,+p1@Rhoh
Mm9::chr5:77695390..77695414,+p2@Rest
Mm9::chr5:96593138..96593161,-p5@Cnot6l
Mm9::chr5:96593166..96593220,-p2@Cnot6l
Mm9::chr6:117850421..117850435,+p15@Hnrnpf
Mm9::chr6:47586869..47586882,-p@chr6:47586869..47586882
-
Mm9::chr6:48689458..48689462,-p@chr6:48689458..48689462
-
Mm9::chr6:57531054..57531109,+p1@Herc6
Mm9::chr6:57531119..57531132,+p4@Herc6
Mm9::chr6:87482995..87483032,-p4@Arhgap25
Mm9::chr7:142843956..142843985,-p1@5830432E09Rik
Mm9::chr7:148282731..148282745,-p@chr7:148282731..148282745
-
Mm9::chr7:150813953..150813968,+p1@uc009kpq.1
p1@uc009kpr.1
Mm9::chr7:17428319..17428365,+p2@Prkd2
Mm9::chr7:52156943..52156963,-p5@Ap2a1
Mm9::chr7:52997400..52997421,+p@chr7:52997400..52997421
+
Mm9::chr7:71144109..71144114,-p@chr7:71144109..71144114
-
Mm9::chr7:75420856..75420911,+p1@ENSMUST00000153805
Mm9::chr7:87171047..87171078,+p1@Zfp710
Mm9::chr8:108583550..108583595,+p2@Nfatc3
Mm9::chr8:74126069..74126107,+p2@Fam129c
Mm9::chr8:74247186..74247197,-p4@Fcho1
Mm9::chr9:21156409..21156413,+p@chr9:21156409..21156413
+
Mm9::chr9:21936079..21936109,-p@chr9:21936079..21936109
-
Mm9::chr9:32503590..32503680,+p1@Ets1
Mm9::chr9:53344724..53344798,-p1@Atm
Mm9::chrX:130697516..130697537,-p@chrX:130697516..130697537
-
Mm9::chrX:98469445..98469487,+p2@Med12


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs