FFCP PHASE1:Hg19::chr1:28415078..28415165,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2140 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3521 | |||
|TSSclassifier=strong | |||
|UniProt=B4DIR7,B4DNZ7,Q99504,Q8IVX7 | |||
|association_with_transcript=0bp_to_ENST00000436342,ENST00000471498,ENST00000540618,ENST00000545175,NM_001990,uc001bpi.1,uc001bpj.2,uc001bpk.1,uc010ofs.1,uc010oft.1,uc010ofu.1_5end | |||
|description=CAGE_peak_1_at_EYA3_5end | |||
|id=chr1:28415078..28415165,- | |||
|ontology_enrichment_celltype=CL:0000763!2.69e-18!112;CL:0000049!2.69e-18!112;CL:0002032!2.20e-12!165;CL:0000837!2.20e-12!165;CL:0000860!9.27e-12!45;CL:0000839!3.43e-11!70;CL:0000557!5.00e-11!71;CL:0002057!8.26e-11!42;CL:0000037!9.31e-11!172;CL:0000566!9.31e-11!172;CL:0002009!2.22e-10!65;CL:0000766!3.31e-10!76;CL:0002194!6.38e-10!63;CL:0000576!6.38e-10!63;CL:0000040!6.38e-10!63;CL:0000559!6.38e-10!63;CL:0000988!8.91e-10!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.61e-15;33!CL:0002057;2.61e-15;33!CL:0000473;6.27e-11;39!CL:0000234;6.27e-11;39!CL:0000576;1.12e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.04e-17,108;CL:0000049,2.04e-17,108;CL:0002032,1.23e-11,161;CL:0000837,1.23e-11,161;CL:0000860,8.26e-11,42;CL:0002057,8.26e-11,42;CL:0000839,2.18e-10,66;CL:0000557,3.15e-10,67;CL:0000037,4.66e-10,168;CL:0002009,1.38e-09,61;CL:0000473,1.94e-09,48;CL:0000234,1.94e-09,48;CL:0000766,1.99e-09,72;CL:0000988,2.61e-09,177;CL:0002194,3.93e-09,59;CL:0000576,3.93e-09,59;CL:0000040,3.93e-09,59;CL:0000559,3.93e-09,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.07e-08;42 | |||
|ontology_enrichment_disease=DOID:2531!3.03e-09!51;DOID:0060083!3.03e-09!51;DOID:1240!2.34e-08!39;DOID:8692!1.17e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.73e-07;31!DOID:1240;3.43e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.03e-09,51;DOID:0060083,3.03e-09,51;DOID:1240,2.34e-08,39;DOID:8692,1.17e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-13!115;UBERON:0001474!1.77e-09!86;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0002193!3.50e-09!112;UBERON:0002371!3.60e-08!80;UBERON:0001049!1.73e-07!57;UBERON:0005068!1.73e-07!57;UBERON:0006241!1.73e-07!57;UBERON:0007135!1.73e-07!57;UBERON:0004765!4.30e-07!101;UBERON:0001434!4.30e-07!101;UBERON:0003080!8.48e-07!42;UBERON:0002780!8.55e-07!41;UBERON:0001890!8.55e-07!41;UBERON:0006240!8.55e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.15e-13,114;UBERON:0002390,9.78e-09,98;UBERON:0003061,9.78e-09,98;UBERON:0001474,9.90e-09,82;UBERON:0002193,1.77e-08,108;UBERON:0002405,1.96e-08,93;UBERON:0001049,1.79e-07,56;UBERON:0005068,1.79e-07,56;UBERON:0006241,1.79e-07,56;UBERON:0007135,1.79e-07,56;UBERON:0002371,1.89e-07,76;UBERON:0000073,3.41e-07,53;UBERON:0002616,3.41e-07,53;UBERON:0002780,8.55e-07,41;UBERON:0001890,8.55e-07,41;UBERON:0003080,8.55e-07,41;UBERON:0006240,8.55e-07,41 | |||
|phase1_expression=16.3510541343501,11.9896293378951,17.7602549160924,5.00366491765652,11.1740273606822,8.72338524100369,7.59899634504932,10.1075179748293,13.3204670381918,11.0580271425679,6.97801167972428,15.2908960491121,11.605747042052,14.2331305904054,6.95934489028623,24.2037052722639,15.6700577286234,10.9546513558106,16.1017823600867,17.975674479211,7.95602695852587,8.14982275843028,27.4786547645814,20.5311637609326,18.9569385788152,56.7751604707278,53.6937855002645,59.1905075478868,9.8341069212226,13.0501995353052,16.1008768248719,14.7107395916628,14.457884101356,9.61360426433648,40.2829443017568,68.0990623614749,15.2672228454121,13.8498852132969,11.2304890583279,16.7098370451206,22.3915474239924,33.6849412659739,24.7272544928819,42.4562857236329,58.5707712717655,47.7890600539998,38.350791089438,43.5837961303135,50.4821384559019,50.6338610486985,77.3605333717884,71.8905978861299,26.200671735983,41.3110197493649,36.5651513804723,36.5190138712653,60.0393530127261,54.6078067201556,35.5057315150247,57.7672248736968,49.8682958123252,49.8075463281941,71.4079894285442,63.5074878293714,45.5628504646877,95.3207177481115,102.142848835274,44.7222624157003,56.3201551893818,65.8082199456503,33.2969726448353,84.7038562771399,95.5716410071471,15.4216359007718,22.9612643962247,15.3050811221114,19.3205245571972,27.1820176043126,22.9837588976825,15.6757009057687,18.3003343023163,15.7091172237585,12.3197371122926,23.4839602842717,17.7901850772711,17.9226693477933,16.4162354684765,21.8405927182704,15.8650769468367,19.0810750907073,10.8150464130795,15.2681669236444,16.8200220375101,11.8954195721123,11.7706798226123,15.5396610017295,12.1960057470577,10.6112905942274,5.96244347098577,45.4747267462644,19.2294137313818,17.5175688121851,19.4826728407911,29.8580024452265,17.6763544484902,19.0519149341914,15.7066240983709,29.589094856631,33.8154303655683,20.5547380754595,18.7918012094377,24.9230653732145,17.9426741426093,20.6006437629079,16.7256838087963,33.9928028092699,15.3288197440768,12.7142154828573,18.7234572094432,14.6540090589084,11.0684187155591,12.3558765778289,20.3276410754993,22.01369711856,18.7396089828519,18.2318484073893,13.1380479507367,10.8867641341356,12.0348088102578,9.84805946403033,7.31420598941885,14.0847180537764,15.9828202304413,14.8190052477672,18.048164782892,9.70471677037519,50.1030146642193,11.6792368872633,25.7134702686265,13.747222642679,16.1616005675352,41.1929192440306,9.83597278389864,11.1235332835329,31.1565497908496,37.0896340447439,20.8743998014618,10.7320780937404,12.0118931263827,9.28643753323912,35.1809461039068,17.2046919021225,24.9941161157468,23.1776256188844,26.4284644812241,28.0620402778869,26.5423607501749,26.1000926761022,33.086262429864,44.1831208849365,20.9471244896756,19.7670747486813,9.03029612928227,32.7220141507823,12.9622711661082,41.6136733803812,27.8416422056451,21.9592386942478,18.397996495906,28.4779697870439,13.923332538711,28.9916918359339,23.2668158488995,15.6993858771312,14.9091585508596,22.9201226112889,28.7327922364685,34.9940677313553,19.1520926387113,14.5776176037,14.9448594021587,12.0867098724408,34.2332138939743,13.6057778790385,22.7212045327708,25.1253329890586,12.67587033856,16.4025002283658,12.7985631500431,20.5369855756002,9.41526687476347,20.7859062599464,19.4247533241758,27.9497105337474,29.6023548319595,19.1621535006358,16.9454281128255,28.5120685747693,11.8688126053707,11.8320977051943,5.03032699271367,26.9337782326506,30.5289188487593,35.7412708974596,20.6319481813994,12.2595118319608,11.8688066536211,14.8596159939628,37.8512131303499,18.5794928272154,24.7960324356687,35.1106582418751,24.0112393125563,29.3710215652017,16.7505170698431,41.3502013991102,24.6515623057833,39.3796687820819,26.7865205049091,23.4386782387277,36.5659880292113,22.8707262976743,24.4167252927102,24.737389204902,22.6379280090393,32.1221146835684,24.8826360504375,31.8071443971565,24.7493098312074,17.3113961875669,14.8869302016621,16.0590037993365,15.6449532329816,10.935095949279,9.66944449467364,17.6459812652152,13.7157101517221,13.1320548044227,16.0155455574197,11.3275184045237,16.1029200189295,14.5979227541912,12.1008015746659,13.7527934323368,19.4259250474093,11.5424147083917,11.8104872739944,12.6217596423101,13.1703683626048,11.7606969108434,22.8159062679296,14.7424082501644,17.1329072937607,21.6316918713179,9.59309820636286,20.245001615226,31.3885816268669,16.8602629886429,14.3756430548632,26.4802953153395,13.6839488230336,4.15973914111831,15.8764476227801,21.9108465402895,17.3764867469016,26.2746934925154,17.1304639653346,18.8351610712252,15.0138835612262,14.5942647556128,29.2998237244003,33.2286056497718,19.4706822598234,9.3733833986777,23.0135515632438,21.266264586358,14.8667147686728,15.6942326797539,9.20118429996507,61.090241499097,33.1942596229862,25.0867019804334,24.2121521740495,25.248486685276,24.0657019367321,26.3572013635212,17.582617081507,8.55362230113526,16.5552263252351,12.9147514872885,17.7212388230958,30.2753927732474,22.2339635104973,27.5018571828563,26.2421582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| |||
|short_description=p1@EYA3 | |||
}} |
Revision as of 17:23, 10 January 2014
Short description: | p1@EYA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EYA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000436342, ENST00000471498, ENST00000540618, ENST00000545175, NM_001990, uc001bpi.1, uc001bpj.2, uc001bpk.1, uc010ofs.1, uc010oft.1, uc010ofu.1_5end |
EntrezGene: | EYA3 |
HGNC: | 3521 |
UniProt: | B4DIR7B4DNZ7Q99504Q8IVX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.04e-17 | 108 |
common myeloid progenitor | 2.04e-17 | 108 |
hematopoietic oligopotent progenitor cell | 1.23e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.23e-11 | 161 |
classical monocyte | 8.26e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.26e-11 | 42 |
myeloid lineage restricted progenitor cell | 2.18e-10 | 66 |
granulocyte monocyte progenitor cell | 3.15e-10 | 67 |
hematopoietic stem cell | 4.66e-10 | 168 |
macrophage dendritic cell progenitor | 1.38e-09 | 61 |
defensive cell | 1.94e-09 | 48 |
phagocyte | 1.94e-09 | 48 |
myeloid leukocyte | 1.99e-09 | 72 |
hematopoietic cell | 2.61e-09 | 177 |
monopoietic cell | 3.93e-09 | 59 |
monocyte | 3.93e-09 | 59 |
monoblast | 3.93e-09 | 59 |
promonocyte | 3.93e-09 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.15e-13 | 114 |
hematopoietic system | 9.78e-09 | 98 |
blood island | 9.78e-09 | 98 |
bone element | 9.90e-09 | 82 |
hemolymphoid system | 1.77e-08 | 108 |
immune system | 1.96e-08 | 93 |
neural tube | 1.79e-07 | 56 |
neural rod | 1.79e-07 | 56 |
future spinal cord | 1.79e-07 | 56 |
neural keel | 1.79e-07 | 56 |
bone marrow | 1.89e-07 | 76 |
regional part of nervous system | 3.41e-07 | 53 |
regional part of brain | 3.41e-07 | 53 |
regional part of forebrain | 8.55e-07 | 41 |
forebrain | 8.55e-07 | 41 |
anterior neural tube | 8.55e-07 | 41 |
future forebrain | 8.55e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.03e-09 | 51 |
immune system cancer | 3.03e-09 | 51 |
leukemia | 2.34e-08 | 39 |
myeloid leukemia | 1.17e-07 | 31 |