FFCP PHASE1:Hg19::chr1:201915590..201915722,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25802 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6647 | |||
|TSSclassifier=weak | |||
|UniProt=P29536,F5H649 | |||
|association_with_transcript=0bp_to_ENST00000367288,ENST00000400965,ENST00000412469,NM_012134,uc001gxb.2,uc010ppu.1_5end | |||
|coexpression_cluster_id=C48 | |||
|description=CAGE_peak_1_at_LMOD1_5end | |||
|id=chr1:201915590..201915722,- | |||
|ontology_enrichment_celltype=CL:0000055!6.59e-15!180;CL:0000057!3.15e-10!75;CL:0000136!7.67e-08!15;CL:0000187!8.88e-08!54;CL:0000192!9.86e-08!42;CL:0000514!9.86e-08!42;CL:0000183!1.09e-07!59;CL:0000680!1.44e-07!57;CL:0000056!1.44e-07!57;CL:0000355!1.44e-07!57;CL:0000393!3.28e-07!60;CL:0000211!3.28e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000136;9.85e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.76e-08,15;CL:0000057,1.93e-08,76;CL:0000192,1.07e-07,43;CL:0000514,1.07e-07,43;CL:0000187,1.99e-07,55;CL:0000680,9.97e-07,58;CL:0000056,9.97e-07,58;CL:0000355,9.97e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.26e-36!115;UBERON:0000475!1.02e-19!365;UBERON:0000481!2.10e-15!347;UBERON:0000468!1.05e-12!659;UBERON:0000914!9.16e-11!83;UBERON:0002329!9.16e-11!83;UBERON:0003077!9.16e-11!83;UBERON:0003059!9.16e-11!83;UBERON:0007282!9.16e-11!83;UBERON:0009618!9.16e-11!83;UBERON:0007285!9.16e-11!83;UBERON:0001049!1.47e-10!57;UBERON:0005068!1.47e-10!57;UBERON:0006241!1.47e-10!57;UBERON:0007135!1.47e-10!57;UBERON:0003075!3.42e-10!86;UBERON:0007284!3.42e-10!86;UBERON:0002385!4.72e-10!63;UBERON:0001015!4.72e-10!63;UBERON:0000383!4.72e-10!63;UBERON:0002616!9.03e-10!59;UBERON:0004290!9.51e-10!70;UBERON:0005743!1.99e-09!86;UBERON:0002346!3.61e-09!90;UBERON:0001134!4.40e-09!61;UBERON:0002036!4.40e-09!61;UBERON:0003082!4.40e-09!61;UBERON:0001017!5.60e-09!82;UBERON:0000955!6.07e-09!69;UBERON:0006238!6.07e-09!69;UBERON:0000477!9.46e-09!286;UBERON:0000153!1.18e-08!129;UBERON:0007811!1.18e-08!129;UBERON:0000033!1.20e-08!123;UBERON:0003080!1.86e-08!42;UBERON:0000483!2.67e-08!309;UBERON:0000467!2.67e-08!625;UBERON:0000073!2.71e-08!94;UBERON:0001016!2.71e-08!94;UBERON:0000119!3.12e-08!312;UBERON:0004111!3.22e-08!241;UBERON:0000480!3.96e-08!626;UBERON:0002780!5.73e-08!41;UBERON:0001890!5.73e-08!41;UBERON:0006240!5.73e-08!41;UBERON:0004121!2.03e-07!169;UBERON:0003056!2.19e-07!61;UBERON:0003102!2.81e-07!95;UBERON:0005256!4.43e-07!143;UBERON:0000486!5.38e-07!82;UBERON:0000924!7.06e-07!173;UBERON:0006601!7.06e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.58e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.20e-37,114;UBERON:0010314,2.62e-11,132;UBERON:0003075,1.15e-10,82;UBERON:0007284,1.15e-10,82;UBERON:0001049,2.43e-10,56;UBERON:0005068,2.43e-10,56;UBERON:0006241,2.43e-10,56;UBERON:0007135,2.43e-10,56;UBERON:0000073,1.16e-09,53;UBERON:0002616,1.16e-09,53;UBERON:0002346,2.92e-09,86;UBERON:0002385,3.04e-09,64;UBERON:0001015,3.04e-09,64;UBERON:0000383,3.04e-09,64;UBERON:0007524,7.79e-09,73;UBERON:0000479,9.48e-09,773;UBERON:0003077,1.61e-08,72;UBERON:0007285,1.61e-08,72;UBERON:0002780,2.77e-08,41;UBERON:0001890,2.77e-08,41;UBERON:0003080,2.77e-08,41;UBERON:0006240,2.77e-08,41;UBERON:0001134,2.93e-08,62;UBERON:0002036,2.93e-08,62;UBERON:0003082,2.93e-08,62;UBERON:0002329,3.04e-08,71;UBERON:0003059,3.04e-08,71;UBERON:0007282,3.04e-08,71;UBERON:0004290,3.04e-08,71;UBERON:0009618,3.04e-08,71;UBERON:0010371,4.66e-08,104;UBERON:0000955,5.06e-08,68;UBERON:0006238,5.06e-08,68;UBERON:0004111,6.79e-08,240;UBERON:0011216,7.58e-08,223;UBERON:0003104,8.90e-08,160;UBERON:0009142,8.90e-08,160;UBERON:0001017,1.42e-07,81;UBERON:0003056,4.90e-07,61;UBERON:0007503,8.60e-07,78 | |||
|phase1_expression=57.0470110909548,59.7340461655843,135.316227932132,128.093821892007,201.579453586707,126.489085994553,164.644920809402,12.6343974685366,36.8271735761772,8.10921990454979,0,0,0.791300934685361,12.1291025900846,18.5582530407633,18.1527789541979,22.9023920649111,19.7183724404591,23.4207743419443,1.84681587115182,0.204000691244253,2.5076377718247,2.57612388417951,1.77936752594749,4.5195350254129,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,12.7133895553007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.199441925932,0,7.28816602508123,10.843174571537,82.2194173442859,13.0361867064741,0,6.8128881842369,1.98523116044542,3.1042115644759,2.19586964232815,114.279243371754,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,43.2365597974927,15.069030888085,30.7189299486668,5.16305917347865,3.19201543978521,48.7789512123807,52.3070079075554,21.4600767122929,5.29058760179603,0.942974704487816,0.490385709340376,0.605429710579726,0,1.17160715916898,1.87296046098192,2.2818872861778,1.49448680551801,0.23486899728753,0.809364721840658,0.421352420106746,2.04154171254893,1.10550885580591,3.09977343527296,26.1360628602052,59.0967960975751,19.1133886006986,8.62341770179486,1.0100166837244,0.750711119231785,2.49357703935765,43.458784467203,78.7673635203481,54.2359392652814,1.92834711372036,50.2290979928813,86.9178572491569,58.0693409177199,16.5050102846421,28.2363930113323,72.6546322928674,66.257600854046,33.7552664482532,63.3340533547791,68.1571190459109,70.7863720559282,53.3431987502079,139.163760266513,91.583657288925,79.3543572013082,0,0,0,1.21973706129595,0.927708378250397,1.16193942869518,1.55491582523056,0.504641701751257,1.45990943630332,57.8863269620319,71.3997441394103,19.3388889893473,87.3011704700121,76.5192250569761,0,0,0,0,0,0,0.269662616320329,0,0,0.738155454624648,5.60967095213783,20.1671265552386,33.8120036186747,0,0.982827216677626,7.68026878685825,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0.651616610620649,0,0,0.811512834825538,30.0566257243703,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,3.4214489204541,0.205654985406647,0,0,0.224262168690721,0.87192013766656,0.1466765716419,18.4858553533622,125.179756048159,0,177.646661878693,106.087585649593,4.37252536245642,1.41849132023278,1.8649552531127,20.1598971057988,10.8524321078289,7.40916303102692,1.62868092146868,17.7695974371273,0.791951872933429,9.94749944296634,29.63213759241,22.0940310512346,0,0,0,70.4497075145253,153.914994017713,2.85273810081437,1.59259437334337,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0.773288812777695,0.502548796003046,0,0,0,0,33.1267027641678,22.5076734476855,1.35632511849868,241.246199375736,117.58470361733,89.417269324241,168.449354759522,39.7248851640589,13.6444502433591,5.17365356462525,16.6056399633859,18.8056551912537,20.7651838578718,16.8388995417957,3.0882908142977,0,0,0,0,0,1.20956117331872,21.8334870880524,110.799544713981,43.2216545426933,21.7836553734692,125.879983270409,56.2988724002626,50.4621425912969,0.771048469013278,5.14929003408069,3.94210348866284,0.519254429183621,5.11325665223821,0.120859449591622,0.40101294060657,0,11.0221870238022,15.6598404485777,59.7927332214974,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,3.79325012561394,1.50506932156456,0,0,0,1.09629938322967,0.522870902049801,2.05160100093111,1.64007322849853,1.30151357865721,55.1269412315314,0.27470839445503,0.165018999841176,5.16838984196555,0.650060246036521,41.7778217594815,0.096670718292122,2.46477787383431,1.84204409671355,1.37836572484531,10.9568649765639,7.68588477745411,0.596586391912706,3.02708921198907,0,0,0,0,3.253918845081,8.49993336442728,1.3940745403212,0.308033580176089,4.7907542728532,1.73986598415015,18.9030703485998,15.3143628813931,0.744316738719335,24.0448362786232,21.3505817194684,16.6333564352367,31.6674851145101,0.636406495851874,7.06453776179307,11.3319648277488,4.94166653524899,3.29874726567922,6.06547444719948,3.17020642346017,2.10629228119491,14.6290121726877,2.92456187557541,4.22600587027022,44.9084708532273,7.63589332550049,2.26016233240486,2.2054613741845,23.2203641334427,28.9377584267483,24.8873479734676,13.7737897929793,71.8302734447972,21.067997870783,5.91560765317707,10.3256173586917,28.5904709348183,71.6908813477313,8.15950447362375,4.01104507065562,25.6850016508723,1.13841952129715,1.39973888097993,0,0.670302275535787,0,58.2750126808263,0,0,0,0.229723400206959,2.02979043692868,2.29391162142713,1.13929437434833,0.714695326373367,2.05681136543097,0.648473311192717,0.540031437238115,1.58625035258854,2.13648142254946,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,161.012489019812,0,3.00897137549192,0,0,0,0,6.95903353436409,13.0822557261777,0.111308705022906,0,2.11125408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| |||
|short_description=p1@LMOD1 | |||
}} |
Revision as of 23:21, 10 January 2014
Short description: | p1@LMOD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMOD1_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 0bp_to_ENST00000367288, ENST00000400965, ENST00000412469, NM_012134, uc001gxb.2, uc010ppu.1_5end |
EntrezGene: | LMOD1 |
HGNC: | 6647 |
UniProt: | P29536F5H649 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.76e-08 | 15 |
fibroblast | 1.93e-08 | 76 |
smooth muscle cell | 1.07e-07 | 43 |
smooth muscle myoblast | 1.07e-07 | 43 |
muscle cell | 1.99e-07 | 55 |
muscle precursor cell | 9.97e-07 | 58 |
myoblast | 9.97e-07 | 58 |
multi-potent skeletal muscle stem cell | 9.97e-07 | 58 |