FFCP PHASE1:Hg19::chr12:51663502..51663523,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57228 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=26918 | |||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |||
|association_with_transcript=209bp_to_uc001ryc.1_5end | |||
|description=CAGE_peak_7_at_SMAGP_5end | |||
|id=chr12:51663502..51663523,- | |||
|ontology_enrichment_celltype=CL:0000066!3.35e-11!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.64e-23;7!CL:0000586;2.64e-23;7!CL:0000346;2.90e-19;3!CL:1000428;2.90e-19;3!CL:0002559;8.77e-12;5!CL:0002550;1.48e-07;1!CL:0002591;1.48e-07;1!CL:0000083;2.24e-07;4!CL:1000449;6.76e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.83e-23,7;CL:0000586,4.83e-23,7;CL:0000346,1.29e-19,3;CL:1000428,1.29e-19,3;CL:0002559,5.42e-12,5;CL:0002550,1.07e-07,1;CL:0000083,1.64e-07,4;CL:0002591,1.80e-07,1;CL:1000449,6.06e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4929;1.97e-13;2!DOID:1799;4.87e-08;1!DOID:10165;4.87e-08;1!DOID:1798;4.87e-08;1!DOID:3119;2.09e-07;14!DOID:1793;2.24e-07;4!DOID:3095;2.96e-07;22!DOID:2994;2.96e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,9.83e-14,2;DOID:1799,4.57e-08,1;DOID:10165,4.57e-08,1;DOID:1798,4.57e-08,1;DOID:1793,1.64e-07,4;DOID:3119,2.21e-07,14;DOID:3095,3.54e-07,22;DOID:2994,3.54e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.85e-11!169;UBERON:0000925!1.85e-11!169;UBERON:0006595!1.85e-11!169;UBERON:0001007!7.39e-09!155;UBERON:0001555!7.39e-09!155;UBERON:0007026!7.39e-09!155;UBERON:0000464!1.02e-08!104;UBERON:0006554!1.49e-08!44;UBERON:0001008!3.44e-08!45;UBERON:0004921!6.41e-08!129;UBERON:0004185!6.41e-08!129;UBERON:0000466!1.28e-07!126;UBERON:0003102!1.39e-07!95;UBERON:0005409!6.24e-07!35;UBERON:0003104!6.36e-07!238;UBERON:0009142!6.36e-07!238;UBERON:0005177!9.93e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;2.90e-19;3!UBERON:0001992;2.90e-19;3!UBERON:0002073;8.77e-12;5!UBERON:0004913;1.48e-07;1!UBERON:0003703;1.48e-07;1!UBERON:0001174;1.48e-07;1!UBERON:0004914;1.48e-07;1!UBERON:0001052;3.82e-07;4!UBERON:0002394;3.82e-07;4!UBERON:0003928;3.82e-07;4!UBERON:0006555;6.76e-07;15!UBERON:0004819;6.76e-07;15!UBERON:0001285;6.76e-07;15!UBERON:0007684;6.76e-07;15!UBERON:0001003;8.42e-07;15!UBERON:0007376;8.42e-07;15!UBERON:0002067;9.43e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.29e-19,3;UBERON:0001992,1.29e-19,3;UBERON:0002073,5.42e-12,5;UBERON:0005086,5.42e-12,5;UBERON:0004913,1.30e-07,1;UBERON:0003703,1.30e-07,1;UBERON:0001174,1.30e-07,1;UBERON:0004914,1.30e-07,1;UBERON:0001052,4.47e-07,4;UBERON:0001003,5.78e-07,15;UBERON:0007376,5.78e-07,15;UBERON:0007383,5.78e-07,15;UBERON:0004211,6.06e-07,15;UBERON:0009773,6.06e-07,15;UBERON:0001231,6.06e-07,15;UBERON:0001285,6.06e-07,15;UBERON:0007684,6.06e-07,15;UBERON:0004208,6.06e-07,15;UBERON:0002067,7.28e-07,9;UBERON:0004016,7.28e-07,9;UBERON:0010083,7.28e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,2.79120467188971,0,0,0.37129905888014,0,0,0,0,0,0.246242116153576,0,0,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.087834785693126,0,1.09288586487763,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0.550236083880135,0.208994966536811,0,0,0,0,0,0,1.83831540172934,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0.872188104285069,0,0.25326102332916,0,0,0.354668382198357,0,0,0,0,0,0,0,0,1.40592859100278,0,0,0.298897361103602,0.469737994575059,0.971237666208789,0.561803226808994,0.204154171254893,0.61417158655884,0.103325781175765,0,0.247266929278557,0,0.718618141816238,0.841680569770331,0.750711119231785,0,0,0,0,0.113432183160021,0.179389635688862,0.427114777637135,0,0,0,0,0,0,0.0974370051611986,0,0.0920498986422993,0.323292113637624,0,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0,0.348581828608555,0,0.504641701751257,0,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0.219500570817251,0,0.502644862058154,0,0.325808305310325,0,0,0.463721619900307,0,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0,0.141775097242386,0.716468181622786,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0.315404830067869,0,0.601892199455438,0,1.03473071292505,0,0.184369168541703,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.164254312027618,0,0.232420756919918,0.241718899183244,0,0.552485933615378,0,0,0.131124414959424,1.35359883872224,0.231046011313244,0,1.46139224653261,0,1.13733384070897,0.340187410553031,0,0,0.270946437543853,0,0.764628819135115,0,0.895499018888713,0,0,0,0.328014645699706,0,0.206082023295445,0,0,1.72279661398852,0,0,0.290012154876366,0,0,0.275673144969061,0.322260734604821,0.145016693914229,0.0852266274161009,0,0.330569830721956,0,0,0.2023155617111,0,0,0,0,0.532306030317022,0,0,0.286249773483982,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0.282810863907425,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,1.08890984861323,0.0941438007767792,0.43050537267123,1.68471475667626,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,1.12284324244932,0,0.121360521749513,0,0.568272293612826,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,1.07842021376792,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0.341380344856499,0.254253650292766,0.709163045303809,0,0,0.173624994933292,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,8.30030055797016,2.06442582142476,3.15077378573823,0.31900115973192,0,0,0,0,0,0.451191321234361,0.19606253431774,0.335643173951685,0,0,0,0,1.27217764290547,0,0.995261931078505,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0.485560759068186,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0,0.277349346026277,0,0.587954384486266,0.870592065804026,0,0,0,0,0,0.484945082442097,0.0882561266915003,0,0.274083849293502,0.19871461170299,0,0,0,0.640358984218058,0,0.144090417154106,0.916292769327325,0.514784993585894,0,0.621262677827163,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0.315222829196793,0.157363764404994,0.105600336519406,0,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0.171086837884329,0.704815022316672,0.533937062838473,0,0,0,0,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0.573409195690071,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0.233713309847224,0,0,0.754703705257725,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0.406870733204662,0.181848659202559,0.214821114084977,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.11796972334774,0,0.346576998451015,0,0,0,0,0,0,3.40478702825849,0,1.33070477595341,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.443511850813194,0,0,0.0679697329768317,0,0.472775363535873,0.333694205676207,0.078493092850514,0,1.12108865325516,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,1.06498800657509,0.766920642832419,0.423387050190929,0,0,0,0,3.23895770930302,0.609589624911347,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| |||
|short_description=p7@SMAGP | |||
}} |
Revision as of 13:28, 11 January 2014
Short description: | p7@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SMAGP_5end |
Coexpression cluster: | NA |
Association with transcript: | 209bp_to_uc001ryc.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.83e-23 | 7 |
germ cell | 4.83e-23 | 7 |
hair follicle dermal papilla cell | 1.29e-19 | 3 |
stem cell of epidermis | 1.29e-19 | 3 |
hair follicle cell | 5.42e-12 | 5 |
fibroblast of the conjuctiva | 1.07e-07 | 1 |
epithelial cell of pancreas | 1.64e-07 | 4 |
smooth muscle cell of the pulmonary artery | 1.80e-07 | 1 |
epithelial cell of nephron | 6.06e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.29e-19 | 3 |
papillary layer of dermis | 1.29e-19 | 3 |
hair follicle | 5.42e-12 | 5 |
hair follicle placode | 5.42e-12 | 5 |
hepatopancreatic ampulla | 1.30e-07 | 1 |
extrahepatic bile duct | 1.30e-07 | 1 |
common bile duct | 1.30e-07 | 1 |
duodenal papilla | 1.30e-07 | 1 |
rectum | 4.47e-07 | 4 |
skin epidermis | 5.78e-07 | 15 |
outer epithelium | 5.78e-07 | 15 |
enveloping layer of ectoderm | 5.78e-07 | 15 |
nephron epithelium | 6.06e-07 | 15 |
renal tubule | 6.06e-07 | 15 |
nephron tubule | 6.06e-07 | 15 |
nephron | 6.06e-07 | 15 |
uriniferous tubule | 6.06e-07 | 15 |
nephrogenic mesenchyme | 6.06e-07 | 15 |
dermis | 7.28e-07 | 9 |
dermatome | 7.28e-07 | 9 |
future dermis | 7.28e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 9.83e-14 | 2 |
islet cell tumor | 4.57e-08 | 1 |
endocrine pancreas cancer | 4.57e-08 | 1 |
pancreatic endocrine carcinoma | 4.57e-08 | 1 |
pancreatic cancer | 1.64e-07 | 4 |
gastrointestinal system cancer | 2.21e-07 | 14 |
germ cell and embryonal cancer | 3.54e-07 | 22 |
germ cell cancer | 3.54e-07 | 22 |