FFCP PHASE1:Hg19::chr12:56694083..56694139,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2422 | |||
|TSSclassifier=strong | |||
|UniProt=B4DJV2,F8VVF6,F8VR34,F8VTT8,F8VVY4,F8VRI6,F8VZK9,F8VPA1,F8VX07,F8W642,F8VU34,F8W0J2,F8W1S4 | |||
|association_with_transcript=0bp_to_ENST00000542324,ENST00000546554,ENST00000546930,ENST00000548041,ENST00000549143,ENST00000549221,ENST00000550159,ENST00000550700,ENST00000550734,ENST00000551137,ENST00000551430,ENST00000551441,ENST00000551968,ENST00000552222,ENST00000552688_5end | |||
|description=CAGE_peak_1_at_CS_5end | |||
|id=chr12:56694083..56694139,- | |||
|ontology_enrichment_celltype=CL:0000066!1.56e-11!254;CL:0000115!2.53e-10!35;CL:0002139!7.56e-10!24;CL:0002078!4.94e-09!44;CL:1000449!4.61e-08!16;CL:0000071!5.66e-08!18;CL:0002546!5.66e-08!18;CL:0002321!2.41e-07!248;CL:1000497!4.39e-07!18;CL:0002518!4.39e-07!18;CL:0000220!4.49e-07!246;CL:0000213!6.75e-07!57;CL:0000215!6.75e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.44e-10;24!CL:0000115;2.73e-09;36!CL:1000449;1.73e-08;15!CL:0000071;5.57e-08;18!CL:1000497;2.08e-07;17!CL:0002518;2.08e-07;17!CL:0002681;7.71e-07;12!CL:0002584;7.71e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.47e-11,253;CL:0000115,7.60e-11,36;CL:0002139,7.56e-10,24;CL:0002078,1.66e-09,45;CL:1000449,1.73e-08,15;CL:0000071,5.66e-08,18;CL:0002546,5.66e-08,18;CL:0002321,1.38e-07,250;CL:1000497,2.10e-07,17;CL:0002518,2.10e-07,17;CL:0000213,2.74e-07,58;CL:0000215,2.74e-07,58;CL:0002681,7.76e-07,12;CL:0002584,7.76e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;5.57e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004211!4.61e-08!16;UBERON:0001285!4.61e-08!16;UBERON:0007684!4.61e-08!16;UBERON:0003220!4.61e-08!16;UBERON:0004208!4.61e-08!16;UBERON:0001986!5.66e-08!18;UBERON:0004638!5.66e-08!18;UBERON:0004852!5.66e-08!18;UBERON:0000119!6.87e-08!312;UBERON:0000483!3.54e-07!309;UBERON:0000487!4.82e-07!22;UBERON:0003103!6.26e-07!69;UBERON:0006555!6.35e-07!17;UBERON:0005103!6.35e-07!17;UBERON:0000083!6.35e-07!17;UBERON:0009201!6.35e-07!17;UBERON:0004819!6.35e-07!17;UBERON:0006553!6.35e-07!17;UBERON:0003074!6.35e-07!17;UBERON:0003060!6.35e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.73e-08;15!UBERON:0004819;1.73e-08;15!UBERON:0001285;1.73e-08;15!UBERON:0007684;1.73e-08;15!UBERON:0004638;5.57e-08;18!UBERON:0001986;5.57e-08;18!UBERON:0004852;5.57e-08;18!UBERON:0002113;5.81e-08;24!UBERON:0011143;5.81e-08;24!UBERON:0006554;9.24e-08;30!UBERON:0001008;9.24e-08;30!UBERON:0000490;3.21e-07;33!UBERON:0000487;4.79e-07;22!UBERON:0001225;7.71e-07;12!UBERON:0008987;7.71e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.73e-08,15;UBERON:0009773,1.73e-08,15;UBERON:0001231,1.73e-08,15;UBERON:0001285,1.73e-08,15;UBERON:0007684,1.73e-08,15;UBERON:0004208,1.73e-08,15;UBERON:0004638,5.66e-08,18;UBERON:0001986,5.66e-08,18;UBERON:0004852,5.66e-08,18;UBERON:0000119,1.61e-07,309;UBERON:0006555,2.96e-07,16;UBERON:0004819,2.96e-07,16;UBERON:0000487,4.82e-07,22;UBERON:0003103,5.27e-07,68;UBERON:0001225,7.76e-07,12;UBERON:0008987,7.76e-07,12;UBERON:0000483,7.96e-07,306 | |||
|phase1_expression=89.749119359655,297.599728208467,164.211880771806,89.0652355342861,196.215920453579,60.1913581629254,238.101885478212,133.924613166488,579.048537719042,139.085408059854,265.862244997495,134.123002487926,113.683567616463,122.652455783406,114.332094626131,76.6450666955024,86.7880120354527,77.4128695810616,85.3882397883387,179.75674479211,172.992586175127,136.352803842968,100.18259549587,128.251336293292,122.278530965338,112.480533260984,118.799552934071,101.536907894646,75.5259411549896,82.5233205909007,77.8725100279862,110.330546937471,190.362140667854,207.801753713735,214.816547209176,215.812894915906,91.3097366331375,73.6813893347397,96.4618792331382,90.0595113470785,57.5462768796606,54.7380295572075,51.2575379592031,74.4438982551371,88.8008467668702,78.1120677024768,91.8094695777454,100.736132565347,74.9489417566151,88.033872050578,92.7301757635344,77.3296891735674,79.2915065694223,95.5317331704063,97.5070703479261,87.156203208226,83.5092819177008,53.4841892979301,88.4582448951908,86.0089792563931,72.8844323410907,84.4419328477993,104.718420251357,78.4253540980157,95.7690487474327,80.0013166814507,79.098425622438,76.3795942380499,91.7809936419554,72.3238852868038,103.523314950306,86.5452444570777,78.7991344727802,75.8406477859871,101.199646783361,63.5265695890379,79.7533281140115,90.7068432762698,61.0757229448905,62.1327781355922,88.1200879991969,63.9324538176219,42.2390986707174,52.9754452924268,56.9285922472675,61.0224218270105,66.8661298350141,53.4519769157669,59.4940385506376,51.5189027449097,85.9511583355267,96.306899056834,98.2442196281838,76.659370575835,91.9234043289719,88.760436569201,75.7332614938257,75.0650556850905,64.9700736838449,59.1840193683,45.3031950620691,57.2871844939027,58.4480185223734,66.6234532173338,48.0207629183985,51.8389313325673,50.3695186602929,72.6277782844578,62.8186648714212,69.3927957427513,64.9422541796744,84.0428948631652,63.1700759070377,60.7317679763649,60.6306038068865,56.2014339779928,44.0703567642209,52.918626604325,55.6643322442906,39.8206767905121,35.1585065082466,34.2162736001415,46.8288620331873,59.3857875756501,42.4764470277976,49.7232229292435,36.9507598614471,60.280416224195,75.9530156025161,58.5090591686508,82.894334546747,101.946530674953,88.2251676720359,151.804444001518,100.768920037814,109.503968334383,60.4417319758835,51.0966613817768,115.899685843147,110.864698731282,110.056986473487,73.2827927409702,146.446705893602,113.83082393482,89.2505332550379,98.5574313113852,100.915092033819,84.9026622527017,80.0792875092179,69.4625527486286,166.165372558565,155.702461714209,136.079076630177,162.808687274115,164.024279558073,166.721533415681,187.677479950056,134.376714768051,140.527673761251,150.289555131337,185.704315187317,149.013332720828,149.36597921948,208.097303475762,143.395124775071,167.526290260934,119.674155609749,134.683330658053,142.584472843271,195.548725871035,141.798149802135,48.7587544513434,50.4114343392823,153.505106354172,83.4912878848135,107.256043379899,73.6195045321497,88.0588425698858,72.3523499684648,107.089421627181,114.221425430784,83.6202989134172,100.832375469524,116.928863356489,122.432965431981,153.930503914895,124.45399968768,163.322037988156,100.827704816194,127.785688025957,85.634093956182,132.231245472879,153.455551260989,154.91723979258,103.710318997486,122.588648677144,99.0894241475591,72.4681742942053,66.7620709052104,261.216310876214,132.944356236004,120.360321477157,151.143172005333,131.882518970471,75.0651731706233,73.5570709917647,64.3018892120234,111.844132595781,121.44678336136,67.6976922554859,69.0897997780172,112.834252127735,79.0412899258826,78.8380052539625,76.8662616649466,100.253141351312,79.4111592063769,92.8956289218341,78.1503639473121,80.4997362957683,96.5626091645191,89.2663590296893,102.584158347845,94.1180354905256,112.371401683424,80.5920913043101,144.172920645182,120.337029635909,159.30189567411,141.29001798595,162.494627963905,78.4701322013034,73.5312801950135,85.5510447796537,116.033333936084,94.2666893904917,103.228765878751,138.300649246578,116.492020843968,112.79316198547,137.646877970028,126.587957017688,120.533474508437,141.033548335532,137.355025587742,97.7257778643832,172.728376382168,196.338483324824,125.118499444746,120.547143336144,38.0265104465493,44.2272247504932,69.1224190817243,59.5975184209778,128.645906716097,111.347508883743,157.930660703012,125.889963648534,69.5660489088485,143.604678440879,113.381290247993,188.228196135604,125.568267561988,117.205639429803,73.4978425916244,164.144651104341,175.008523753959,135.841464695503,85.3420749796017,90.9995331820565,64.0164215827233,122.150226402682,80.1121964736245,58.1149770718017,78.2796717406685,94.5639898606718,95.5589437239391,96.7811015251493,96.9958178287984,107.893249099212,81.3567530282209,44.3682167257252,34.0123090064029,44.184851699233,111.692796059925,144.391624861029,152.382681373061,186.468966164749,102.210527747104,92.8060048737705,107.184912236467,252.967726283134,163.920985881313,218.328076888968,82.60462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| |||
|short_description=p1@CS | |||
}} |
Revision as of 14:01, 11 January 2014
Short description: | p1@CS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000542324, ENST00000546554, ENST00000546930, ENST00000548041, ENST00000549143, ENST00000549221, ENST00000550159, ENST00000550700, ENST00000550734, ENST00000551137, ENST00000551430, ENST00000551441, ENST00000551968, ENST00000552222, ENST00000552688_5end |
EntrezGene: | CS |
HGNC: | 2422 |
UniProt: | B4DJV2F8VVF6F8VR34F8VTT8F8VVY4F8VRI6F8VZK9F8VPA1F8VX07F8W642F8VU34F8W0J2F8W1S4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.47e-11 | 253 |
endothelial cell | 7.60e-11 | 36 |
endothelial cell of vascular tree | 7.56e-10 | 24 |
meso-epithelial cell | 1.66e-09 | 45 |
epithelial cell of nephron | 1.73e-08 | 15 |
blood vessel endothelial cell | 5.66e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.66e-08 | 18 |
embryonic cell | 1.38e-07 | 250 |
kidney cell | 2.10e-07 | 17 |
kidney epithelial cell | 2.10e-07 | 17 |
lining cell | 2.74e-07 | 58 |
barrier cell | 2.74e-07 | 58 |
kidney cortical cell | 7.76e-07 | 12 |
renal cortical epithelial cell | 7.76e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.73e-08 | 15 |
renal tubule | 1.73e-08 | 15 |
nephron tubule | 1.73e-08 | 15 |
nephron | 1.73e-08 | 15 |
uriniferous tubule | 1.73e-08 | 15 |
nephrogenic mesenchyme | 1.73e-08 | 15 |
blood vessel endothelium | 5.66e-08 | 18 |
endothelium | 5.66e-08 | 18 |
cardiovascular system endothelium | 5.66e-08 | 18 |
cell layer | 1.61e-07 | 309 |
excretory tube | 2.96e-07 | 16 |
kidney epithelium | 2.96e-07 | 16 |
simple squamous epithelium | 4.82e-07 | 22 |
compound organ | 5.27e-07 | 68 |
cortex of kidney | 7.76e-07 | 12 |
renal parenchyma | 7.76e-07 | 12 |
epithelium | 7.96e-07 | 306 |