FFCP PHASE1:Hg19::chr12:66218378..66218401,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |||
|TSSclassifier=weak | |||
|UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | |||
|association_with_transcript=138bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_6_at_HMGA2_5end | |||
|id=chr12:66218378..66218401,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.20e-25!248;CL:0000220!1.82e-24!246;CL:0000055!1.02e-22!180;CL:0000012!2.53e-20!682;CL:0000548!8.58e-20!679;CL:0000004!8.58e-20!679;CL:0000255!8.58e-20!679;CL:0000066!3.17e-18!254;CL:0002371!6.99e-15!591;CL:0000144!1.73e-14!625;CL:0000393!9.73e-12!60;CL:0000211!9.73e-12!60;CL:0000680!1.97e-11!57;CL:0000056!1.97e-11!57;CL:0000355!1.97e-11!57;CL:0000183!4.39e-11!59;CL:0000003!1.03e-10!722;CL:0000222!2.10e-10!119;CL:0000187!2.17e-10!54;CL:0000223!5.73e-09!59;CL:0000057!2.03e-08!75;CL:0002076!2.59e-08!43;CL:0000192!1.62e-07!42;CL:0000514!1.62e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.70e-07;15!CL:1000497;2.11e-07;17!CL:0002518;2.11e-07;17!CL:0000187;3.31e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.82e-22,250;CL:0000066,2.63e-15,253;CL:0000680,9.24e-12,58;CL:0000056,9.24e-12,58;CL:0000355,9.24e-12,58;CL:0000393,1.76e-11,61;CL:0000211,1.76e-11,61;CL:0000187,1.24e-10,55;CL:0000222,9.80e-10,121;CL:0000192,8.36e-08,43;CL:0000514,8.36e-08,43;CL:0000223,1.32e-07,58;CL:1000449,2.33e-07,15;CL:1000497,2.42e-07,17;CL:0002518,2.42e-07,17;CL:0000057,2.62e-07,76;CL:0000359,7.26e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;3.60e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.38e-15!143;UBERON:0000486!2.46e-14!82;UBERON:0002100!2.36e-13!216;UBERON:0000914!3.16e-13!83;UBERON:0002329!3.16e-13!83;UBERON:0003077!3.16e-13!83;UBERON:0003059!3.16e-13!83;UBERON:0007282!3.16e-13!83;UBERON:0009618!3.16e-13!83;UBERON:0007285!3.16e-13!83;UBERON:0003914!1.59e-12!118;UBERON:0003104!3.75e-12!238;UBERON:0009142!3.75e-12!238;UBERON:0000490!1.07e-11!138;UBERON:0000119!3.49e-11!312;UBERON:0004290!3.95e-11!70;UBERON:0000481!1.36e-10!347;UBERON:0000483!1.87e-10!309;UBERON:0000475!2.78e-10!365;UBERON:0002049!2.14e-09!79;UBERON:0007798!2.14e-09!79;UBERON:0001134!2.41e-09!61;UBERON:0002036!2.41e-09!61;UBERON:0003082!2.41e-09!61;UBERON:0002385!1.07e-08!63;UBERON:0001015!1.07e-08!63;UBERON:0000383!1.07e-08!63;UBERON:0000468!1.09e-08!659;UBERON:0001444!1.97e-07!48;UBERON:0000922!3.11e-07!612;UBERON:0001981!3.67e-07!60;UBERON:0007500!3.67e-07!60;UBERON:0004537!3.67e-07!60;UBERON:0006965!3.67e-07!60;UBERON:0003102!5.27e-07!95;UBERON:0000019!6.96e-07!19;UBERON:0000047!6.96e-07!19;UBERON:0004088!6.96e-07!19;UBERON:0003072!6.96e-07!19;UBERON:0003071!6.96e-07!19;UBERON:0004128!6.96e-07!19;UBERON:0001637!7.14e-07!42;UBERON:0003509!7.14e-07!42;UBERON:0004572!7.14e-07!42;UBERON:0000467!7.46e-07!625;UBERON:0000055!7.53e-07!69;UBERON:0000466!9.75e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.70e-07;15!UBERON:0004819;1.70e-07;15!UBERON:0001285;1.70e-07;15!UBERON:0007684;1.70e-07;15!UBERON:0000019;5.03e-07;19!UBERON:0000047;5.03e-07;19!UBERON:0004088;5.03e-07;19!UBERON:0010230;5.03e-07;19!UBERON:0003914;5.72e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,6.56e-15,83;UBERON:0007503,5.81e-14,78;UBERON:0003914,3.01e-13,117;UBERON:0003104,3.68e-13,160;UBERON:0009142,3.68e-13,160;UBERON:0000490,1.33e-12,148;UBERON:0000119,1.48e-12,309;UBERON:0002329,4.75e-12,71;UBERON:0003059,4.75e-12,71;UBERON:0007282,4.75e-12,71;UBERON:0004290,4.75e-12,71;UBERON:0009618,4.75e-12,71;UBERON:0007524,8.38e-12,73;UBERON:0000483,9.80e-12,306;UBERON:0003077,1.31e-11,72;UBERON:0007285,1.31e-11,72;UBERON:0002100,9.37e-11,199;UBERON:0005256,1.77e-10,122;UBERON:0001134,6.59e-10,62;UBERON:0002036,6.59e-10,62;UBERON:0003082,6.59e-10,62;UBERON:0002049,2.20e-09,78;UBERON:0007798,2.20e-09,78;UBERON:0002385,4.30e-09,64;UBERON:0001015,4.30e-09,64;UBERON:0000383,4.30e-09,64;UBERON:0007500,1.26e-07,59;UBERON:0001981,1.26e-07,59;UBERON:0004537,1.26e-07,59;UBERON:0006965,1.26e-07,59;UBERON:0001444,1.57e-07,49;UBERON:0000922,1.65e-07,592;UBERON:0001637,1.80e-07,42;UBERON:0003509,1.80e-07,42;UBERON:0004572,1.80e-07,42;UBERON:0004211,2.33e-07,15;UBERON:0009773,2.33e-07,15;UBERON:0001231,2.33e-07,15;UBERON:0001285,2.33e-07,15;UBERON:0007684,2.33e-07,15;UBERON:0004208,2.33e-07,15;UBERON:0000033,2.59e-07,56;UBERON:0000055,3.79e-07,68;UBERON:0004872,4.72e-07,83;UBERON:0003102,6.25e-07,99 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,1.26343974685366,0,4.66894479352867,11.8626198555313,4.36882744260345,3.4289707169699,2.72285976512103,2.31978163009541,3.36162573225888,6.02694528023977,4.38186054232424,2.43966399395253,0.984968464614303,2.44800829493104,0,1.43117993565528,1.23186982565596,2.51085279189606,0.687720651731561,0.656804715599566,0.236132343941038,0,0,0,4.59710612239464,5.72291245678675,6.28581817283539,0,0,0.880801318004542,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29096936716765,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,1.12101712596307,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,1.02290049474824,1.0843174571537,0,0.579386075843295,0.795285947051099,3.40644409211845,3.97046232089085,5.76496433402666,5.35792192728069,0,5.10013403609559,2.96627554227544,0,0,0,0,0,0,2.78267370313387,0,2.08284300964557,2.26123176769604,3.77549492588915,3.85165258716094,4.17989933073621,3.10100111003195,3.20189636418039,1.00416183829401,0.402829317109147,0,0,5.51494620518803,2.43042584364528,4.37568668591991,4.4905874525234,9.79719880204903,3.06633274931766,5.69559395740877,3.11442964681692,0,0,3.48875241714027,1.49091585508596,1.13967460498122,6.3556406790345,4.30254931123221,1.41867352879343,1.68203280042692,4.2699598291882,3.20667812942308,2.17847724779836,3.63718814588158,6.04809041519797,1.96764655938411,0.576175924479999,2.34321431833797,6.55536161343673,6.27519003698894,8.36912611090086,8.80758739828237,11.8167249388736,17.4159000310788,2.24569588380383,9.70391106762967,2.89312187292143,0,2.96720315134268,1.82032272387605,0,8.58514181165738,13.3876816263002,5.54128230968366,2.63386572528503,1.5324389789951,2.70428506031874,4.19699077692078,5.91985797773244,0.640672166455702,1.48352330811693,8.70264178644767,1.54578793857658,0.257640540045629,0.558350568994769,8.60759294430458,1.85130309806277,4.29137416214995,1.74894807420369,0.646584227275248,2.4850671476163,1.81353776809752,2.54340888465731,3.09217365061275,6.81865301477087,4.87567812161307,9.75789649036763,10.4698516973973,12.3165579441689,5.07939169575315,12.1114008420302,4.74470566798579,4.69348596989448,0,0,0.464367928031979,3.60939740834793,0,0,0,0,0,0,0,0,0,2.95262181849859,11.2193419042757,0.4115740113314,0,0,0,0,3.97316789473185,1.8448265781467,5.31860211925429,5.1582634142054,2.24803506515239,6.13226731710948,20.276869489718,5.53874119027552,4.15973914111831,1.44331342025273,6.14431146367907,1.52631302506568,1.73239737313289,1.85194205030644,0.761016608938393,0,0,0,0,0,3.74935335947108,3.02367830757947,3.96970272278682,4.29880908973672,3.77824120068151,3.4504441124869,0,0,0,0,0,0.190493682876507,0,0,0,0.616964956219941,0.300343057843917,0,8.29770024155669,3.05172048183296,11.6607874455311,5.30014034606889,0,1.690605505112,1.32969058292435,2.08014873822732,11.8315392160585,12.766421882095,14.6532198458855,0.285955987316295,1.08524321078289,3.29296134712308,1.95441710576241,0.710783897485092,3.95975936466715,0.904318131178758,0,0.299918973546171,0,0,0,1.19812427745791,1.14861935834114,32.8064881593652,3.4747513600219,8.01357657946495,7.16243852959582,0,0,0,0,2.28685161800217,1.30139853857622,0.773288812777695,0.167516265334349,3.82763250991898,0,0,0,1.59498939234882,3.00102312635806,6.78162559249339,0.207970861530807,0.178428988797162,0.157702415033935,1.05427273493442,1.80567659836631,2.27407504055985,1.03473071292505,4.64957918974806,2.39679919104214,6.77692192851046,4.89502893656851,1.02943027143257,0,0,0,0,3.32870879020994,1.5119514666484,0.992431231275107,0,1.12264037773229,0.768834895534206,0.511707249066704,0.321707842287215,0,5.08891989548763,2.13074070375753,5.17401082886998,10.3850885836724,4.18357362455853,0.725156697549733,2.80709058424599,1.74953878978203,0.803701137152247,2.00300284807389,0.131124414959424,13.5359883872224,20.7171256810876,7.0591479225917,8.76835347919564,17.5215703962174,2.27466768141793,4.08224892663638,5.61381381865562,6.16909010761157,3.25135725052623,1.50506932156456,3.05851527654046,4.98645605357235,5.1491193586101,1.09629938322967,0.784306353074702,12.5660561307031,7.87235149679294,10.737487023922,0,1.00726411300178,0.742585499285292,6.89118645595407,3.25030123018261,0,5.22021878777459,8.93481979264937,3.99109554287937,11.9917818061542,3.11518710117994,3.62541734785571,9.1192491335228,0.445160178233687,5.12383237619032,4.61256161676255,14.1650110868988,1.4162089319777,6.507837690162,11.6480568327337,5.5762981612848,2.7723022215848,1.59691809095107,6.08953094452551,3.33583594387056,3.43499728180779,6.32669227911434,6.01120906965579,0.190630193923825,6.90924036540602,1.28381696410176,2.22742273548156,3.92474320099615,2.69808686374972,2.47083326762449,4.47687128913608,2.83055474202642,0,1.68503382495592,1.46290121726877,3.41198885483798,1.05650146756755,1.50149902548784,0.282810863907425,0,1.6540960306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| |||
|short_description=p6@HMGA2 | |||
}} |
Revision as of 14:27, 11 January 2014
Short description: | p6@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | 138bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.82e-22 | 250 |
epithelial cell | 2.63e-15 | 253 |
muscle precursor cell | 9.24e-12 | 58 |
myoblast | 9.24e-12 | 58 |
multi-potent skeletal muscle stem cell | 9.24e-12 | 58 |
electrically responsive cell | 1.76e-11 | 61 |
electrically active cell | 1.76e-11 | 61 |
muscle cell | 1.24e-10 | 55 |
mesodermal cell | 9.80e-10 | 121 |
smooth muscle cell | 8.36e-08 | 43 |
smooth muscle myoblast | 8.36e-08 | 43 |
endodermal cell | 1.32e-07 | 58 |
epithelial cell of nephron | 2.33e-07 | 15 |
kidney cell | 2.42e-07 | 17 |
kidney epithelial cell | 2.42e-07 | 17 |
fibroblast | 2.62e-07 | 76 |
vascular associated smooth muscle cell | 7.26e-07 | 32 |