FFCP PHASE1:Hg19::chr2:32490833..32490846,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16412 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NPP4 | |||
|association_with_transcript=-21bp_to_NM_021209_5end | |||
|coexpression_cluster_id=C3806 | |||
|description=CAGE_peak_3_at_NLRC4_5end | |||
|id=chr2:32490833..32490846,- | |||
|ontology_enrichment_celltype=CL:0002057!5.83e-57!42;CL:0000766!5.37e-56!76;CL:0000860!2.60e-52!45;CL:0002194!4.48e-51!63;CL:0000576!4.48e-51!63;CL:0000040!4.48e-51!63;CL:0000559!4.48e-51!63;CL:0002009!4.48e-49!65;CL:0000839!1.43e-44!70;CL:0000557!9.52e-44!71;CL:0000763!7.76e-36!112;CL:0000049!7.76e-36!112;CL:0000738!1.56e-34!140;CL:0002087!4.02e-32!119;CL:0000037!5.94e-27!172;CL:0000566!5.94e-27!172;CL:0002031!3.56e-26!124;CL:0002032!2.29e-25!165;CL:0000837!2.29e-25!165;CL:0000988!1.75e-24!182;CL:0000094!4.37e-11!8;CL:0002393!5.70e-08!9;CL:0002397!5.70e-08!9;CL:0000081!1.04e-07!11;CL:0000875!3.72e-07!3;CL:0002396!3.72e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.97e-60;33!CL:0002057;8.97e-60;33!CL:0000473;2.84e-53;39!CL:0000234;2.84e-53;39!CL:0000576;1.76e-42;48!CL:0000766;2.09e-31;69!CL:0000763;1.07e-14;100!CL:0000875;1.03e-13;3!CL:0002396;1.03e-13;3!CL:0000738;1.07e-10;136!CL:0000771;9.19e-10;2!CL:0002087;9.40e-10;104!CL:0000094;6.04e-09;8!CL:0000235;6.48e-07;6!CL:0002393;6.48e-07;6!CL:0002397;6.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.00e-85,48;CL:0000234,3.00e-85,48;CL:0000860,2.21e-80,42;CL:0002057,2.21e-80,42;CL:0000766,3.06e-69,72;CL:0002194,1.00e-66,59;CL:0000576,1.00e-66,59;CL:0000040,1.00e-66,59;CL:0000559,1.00e-66,59;CL:0002009,2.47e-64,61;CL:0000839,5.55e-59,66;CL:0000557,5.25e-58,67;CL:0000763,9.66e-44,108;CL:0000049,9.66e-44,108;CL:0000738,3.64e-33,136;CL:0002087,6.12e-31,115;CL:0002031,2.35e-29,120;CL:0002032,8.24e-27,161;CL:0000837,8.24e-27,161;CL:0000037,2.28e-25,168;CL:0000988,1.11e-23,177;CL:0002393,4.48e-17,9;CL:0002397,4.48e-17,9;CL:0000875,4.91e-14,3;CL:0002396,4.91e-14,3;CL:0000771,1.01e-09,2;CL:0000094,6.06e-09,8;CL:0000134,6.49e-08,354;CL:0002320,1.30e-07,361;CL:0000235,7.73e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;3.74e-55;42!CL:0000049;2.15e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.98e-51!102;UBERON:0003061!4.98e-51!102;UBERON:0002193!5.98e-47!112;UBERON:0002371!2.95e-37!80;UBERON:0001474!1.09e-33!86;UBERON:0002405!8.71e-32!115;UBERON:0004765!1.22e-26!101;UBERON:0001434!1.22e-26!101;UBERON:0003081!9.92e-22!216;UBERON:0007023!1.90e-13!115;UBERON:0002204!4.79e-11!167;UBERON:0000178!9.01e-11!15;UBERON:0000179!9.01e-11!15;UBERON:0000463!9.01e-11!15;UBERON:0000926!5.84e-07!448;UBERON:0004120!5.84e-07!448;UBERON:0006603!5.84e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.93e-07;3!UBERON:0000178;8.27e-07;15!UBERON:0000179;8.27e-07;15!UBERON:0000463;8.27e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.72e-58,98;UBERON:0003061,2.72e-58,98;UBERON:0002193,2.19e-55,108;UBERON:0002371,2.32e-50,76;UBERON:0002405,5.30e-49,93;UBERON:0001474,3.47e-46,82;UBERON:0004765,1.79e-41,90;UBERON:0001434,1.24e-36,100;UBERON:0003081,5.45e-24,203;UBERON:0002204,4.43e-19,167;UBERON:0000926,1.68e-12,315;UBERON:0004120,1.68e-12,315;UBERON:0006603,1.68e-12,315;UBERON:0002384,3.37e-07,371;UBERON:0002106,7.15e-07,3;UBERON:0004854,7.15e-07,3;UBERON:0009034,7.15e-07,3;UBERON:0002095,7.15e-07,3;UBERON:0004782,7.15e-07,3;UBERON:0003281,7.15e-07,3;UBERON:0009664,7.15e-07,3;UBERON:0002296,7.15e-07,3;UBERON:0005602,7.15e-07,3;UBERON:0001179,7.15e-07,3;UBERON:0006293,7.15e-07,3;UBERON:0000178,8.24e-07,15;UBERON:0000179,8.24e-07,15;UBERON:0000463,8.24e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.53531759238885,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,6.97911546141911,3.02300754951048,5.82201746850759,3.0215774797739,0.822335776043652,1.54853185447552,0.575384784644301,0.768482119587302,1.18241114944293,1.03423704220986,2.5819387343353,0,7.71793592124679,1.36453075028923,2.02251136000576,3.06083892370903,4.17207735198922,3.19668562899521,3.29851300186716,1.59570926097305,1.70489900213078,0.870627715885752,1.13477044938228,0.622822248995575,1.25624332628372,0.521482918420201,1.73751075764093,0.605399502633369,0,0.316462387440884,2.11255286311942,1.91343869968539,1.67726916406701,1.01095768031846,1.65194582125657,1.92870704036496,1.99508920618874,2.58591680358817,2.55729815270488,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0.468008530278475,1.48631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50677127429638,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,3.72973962092432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.862856803274467,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0.764637207142375,1.70894156152249,1.19115887728894,0.411362273086194,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0,0.223171457441873,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,2.65013777824443,0.129282956361551,0,0,0,0.533937062838473,0.471612915298998,1.65695622138878,4.96166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44358186747619,2.19156819110162,0,0,0,0,0,0,0.573358332605805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27940389140589,0,0.258355639344024,0.620747142958579,0,0.0636471582781649,0,0,0.342233301085281,0,0.502055437748735,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p3@NLRC4 | |||
}} |
Revision as of 02:30, 21 January 2014
Short description: | p3@NLRC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NLRC4_5end |
Coexpression cluster: | C3806_CD14_Eosinophils_CD14CD16_Neutrophils_Whole_lymph_Basophils |
Association with transcript: | -21bp_to_NM_021209_5end |
EntrezGene: | NLRC4 |
HGNC: | 16412 |
UniProt: | Q9NPP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.72e-58 | 98 |
blood island | 2.72e-58 | 98 |
hemolymphoid system | 2.19e-55 | 108 |
bone marrow | 2.32e-50 | 76 |
immune system | 5.30e-49 | 93 |
bone element | 3.47e-46 | 82 |
skeletal element | 1.79e-41 | 90 |
skeletal system | 1.24e-36 | 100 |
lateral plate mesoderm | 5.45e-24 | 203 |
musculoskeletal system | 4.43e-19 | 167 |
mesoderm | 1.68e-12 | 315 |
mesoderm-derived structure | 1.68e-12 | 315 |
presumptive mesoderm | 1.68e-12 | 315 |
connective tissue | 3.37e-07 | 371 |
spleen | 7.15e-07 | 3 |
gastrointestinal system mesentery | 7.15e-07 | 3 |
stomach region | 7.15e-07 | 3 |
mesentery | 7.15e-07 | 3 |
gastrointestinal system serosa | 7.15e-07 | 3 |
mesentery of stomach | 7.15e-07 | 3 |
gut mesentery | 7.15e-07 | 3 |
dorsal mesentery | 7.15e-07 | 3 |
dorsal mesogastrium | 7.15e-07 | 3 |
peritoneal cavity | 7.15e-07 | 3 |
spleen primordium | 7.15e-07 | 3 |
blood | 8.24e-07 | 15 |
haemolymphatic fluid | 8.24e-07 | 15 |
organism substance | 8.24e-07 | 15 |