FFCP PHASE1:Hg19::chr8:145086574..145086611,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375686 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30510 | |||
|TSSclassifier=strong | |||
|UniProt=Q76KD6,B4DWW9 | |||
|association_with_transcript=0bp_to_ENST00000377470,ENST00000447830,NM_001134374,NM_198572,uc011lkw.1,uc011lkx.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_SPATC1_5end | |||
|id=chr8:145086574..145086611,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.13e-36!76;CL:0000763!2.17e-36!112;CL:0000049!2.17e-36!112;CL:0000557!9.23e-34!71;CL:0000738!1.23e-32!140;CL:0000988!1.28e-32!182;CL:0000839!1.05e-31!70;CL:0002009!1.34e-29!65;CL:0000037!1.38e-29!172;CL:0000566!1.38e-29!172;CL:0002057!4.35e-29!42;CL:0002194!3.94e-28!63;CL:0000576!3.94e-28!63;CL:0000040!3.94e-28!63;CL:0000559!3.94e-28!63;CL:0000860!8.43e-27!45;CL:0002032!2.13e-26!165;CL:0000837!2.13e-26!165;CL:0002031!7.97e-21!124;CL:0002087!8.63e-19!119;CL:0000451!3.40e-15!10;CL:0000080!6.16e-15!6;CL:0000990!4.85e-14!8;CL:0000453!2.23e-12!5;CL:0000134!5.63e-09!358;CL:0000771!8.26e-09!2;CL:0002320!1.29e-08!365;CL:0000219!2.38e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000453;7.07e-26;5!CL:0000860;2.11e-20;33!CL:0002057;2.11e-20;33!CL:0000771;1.91e-17;2!CL:0000990;1.71e-14;8!CL:0000473;5.63e-14;39!CL:0000234;5.63e-14;39!CL:0000451;6.79e-12;10!CL:0000576;2.35e-10;48!CL:0000766;8.71e-08;69!CL:0000081;2.77e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,7.55e-26,5;CL:0000860,1.08e-20,42;CL:0002057,1.08e-20,42;CL:0000763,2.44e-20,108;CL:0000049,2.44e-20,108;CL:0000988,5.06e-18,177;CL:0000473,6.93e-18,48;CL:0000234,6.93e-18,48;CL:0000771,1.62e-17,2;CL:0002009,4.60e-16,61;CL:0000766,5.90e-16,72;CL:0000738,1.59e-15,136;CL:0000990,1.77e-14,8;CL:0000557,1.81e-14,67;CL:0002032,2.50e-14,161;CL:0000837,2.50e-14,161;CL:0002194,5.97e-14,59;CL:0000576,5.97e-14,59;CL:0000040,5.97e-14,59;CL:0000559,5.97e-14,59;CL:0000037,1.35e-13,168;CL:0000839,2.64e-12,66;CL:0000451,6.99e-12,10;CL:0002031,1.19e-08,120;CL:0002087,1.11e-07,115;CL:0000081,2.65e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;9.97e-13;42!CL:0000049;1.28e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.30e-37!102;UBERON:0003061!1.30e-37!102;UBERON:0002193!1.80e-33!112;UBERON:0002371!3.54e-29!80;UBERON:0001474!1.19e-26!86;UBERON:0002405!8.86e-23!115;UBERON:0004765!1.20e-21!101;UBERON:0001434!1.20e-21!101;UBERON:0003081!3.97e-14!216;UBERON:0002204!2.33e-10!167;UBERON:0002384!4.00e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;6.29e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.37e-15,98;UBERON:0003061,3.37e-15,98;UBERON:0002193,1.47e-13,108;UBERON:0002371,1.54e-12,76;UBERON:0001474,1.74e-11,82;UBERON:0004765,2.68e-10,90;UBERON:0002405,6.63e-10,93;UBERON:0001434,4.45e-09,100;UBERON:0002331,6.44e-08,10;UBERON:0000358,6.44e-08,10;UBERON:0000307,6.44e-08,10;UBERON:0000091,6.44e-08,10;UBERON:0000087,6.44e-08,10;UBERON:0007010,6.44e-08,10;UBERON:0007806,6.44e-08,10;UBERON:0008780,6.44e-08,10;UBERON:0005728,6.44e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40381113229099,0,0,0,0.257575567634187,0,0.377875943688809,0,0.464858073811369,0.411167888021826,0,0,0.256160706529101,0.236482229888585,0.689491361473237,0.645484683583826,0,1.12945403725563,1.09162460023138,2.02251136000576,1.22433556948361,1.92557416245656,1.91801137739712,0,0,1.27867425159808,1.16083695451434,1.13477044938228,3.11411124497787,0,0,0,0,0.368277635987565,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1332214173056,0,0,0,0,0.26591592103773,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,15.511210565933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.264145302039678,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.52346483097368,2.10058696209055,4.28129992972367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36598618851383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1248694577575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50748555910899,1.46151324344699,11.1224468093974,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8256591692567,29.2080901870235,0,0,0,0,0,0.248298857183432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SPATC1 | |||
}} |
Revision as of 00:24, 23 January 2014
Short description: | p1@SPATC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPATC1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000377470, ENST00000447830, NM_001134374, NM_198572, uc011lkw.1, uc011lkx.1_5end |
EntrezGene: | SPATC1 |
HGNC: | 30510 |
UniProt: | Q76KD6B4DWW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 7.55e-26 | 5 |
classical monocyte | 1.08e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.08e-20 | 42 |
myeloid cell | 2.44e-20 | 108 |
common myeloid progenitor | 2.44e-20 | 108 |
hematopoietic cell | 5.06e-18 | 177 |
defensive cell | 6.93e-18 | 48 |
phagocyte | 6.93e-18 | 48 |
eosinophil | 1.62e-17 | 2 |
macrophage dendritic cell progenitor | 4.60e-16 | 61 |
myeloid leukocyte | 5.90e-16 | 72 |
leukocyte | 1.59e-15 | 136 |
conventional dendritic cell | 1.77e-14 | 8 |
granulocyte monocyte progenitor cell | 1.81e-14 | 67 |
hematopoietic oligopotent progenitor cell | 2.50e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.50e-14 | 161 |
monopoietic cell | 5.97e-14 | 59 |
monocyte | 5.97e-14 | 59 |
monoblast | 5.97e-14 | 59 |
promonocyte | 5.97e-14 | 59 |
hematopoietic stem cell | 1.35e-13 | 168 |
myeloid lineage restricted progenitor cell | 2.64e-12 | 66 |
dendritic cell | 6.99e-12 | 10 |
hematopoietic lineage restricted progenitor cell | 1.19e-08 | 120 |
nongranular leukocyte | 1.11e-07 | 115 |
blood cell | 2.65e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.37e-15 | 98 |
blood island | 3.37e-15 | 98 |
hemolymphoid system | 1.47e-13 | 108 |
bone marrow | 1.54e-12 | 76 |
bone element | 1.74e-11 | 82 |
skeletal element | 2.68e-10 | 90 |
immune system | 6.63e-10 | 93 |
skeletal system | 4.45e-09 | 100 |
umbilical cord | 6.44e-08 | 10 |
blastocyst | 6.44e-08 | 10 |
blastula | 6.44e-08 | 10 |
bilaminar disc | 6.44e-08 | 10 |
inner cell mass | 6.44e-08 | 10 |
cleaving embryo | 6.44e-08 | 10 |
connecting stalk | 6.44e-08 | 10 |
inner cell mass derived epiblast | 6.44e-08 | 10 |
extraembryonic mesoderm | 6.44e-08 | 10 |