FF:10442-106F1: Difference between revisions

Revision as of 16:40, 27 November 2014

Name:	schwannoma cell line:HS-PSS
Species:	Human (Homo sapiens)
Library ID:	CNhs11245
Sample type:	cell lines
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	peripheral nervous system
dev stage	NA
sex	male
age	unknown
cell type	schwann cell
cell line	HS-PSS
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005495

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11245		CAGE		DRX007996		DRR008868
CAGE		DRX007997		DRR008869

Accession ID Hg19

Library id		BAM		CTSS
CNhs11245		DRZ000293		DRZ001678
DRZ000294		DRZ001679

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. dataNo results for this sample

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.178
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0213
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.002
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00725
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.129
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0355
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.216
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.27
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.125
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0301
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0633
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0355
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0989
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0243
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0989
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0355
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: "CNhs11245This sample isn't target for the analysis
library id: CNhs11183

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0989
MA0003.1	MA0003.1	0.343
MA0004.1	MA0004.1	1.63753e-4
MA0006.1	MA0006.1	0.258
MA0007.1	MA0007.1	0.186
MA0009.1	MA0009.1	0.956
MA0014.1	MA0014.1	0.407
MA0017.1	MA0017.1	0.369
MA0018.2	MA0018.2	0.157
MA0019.1	MA0019.1	0.118
MA0024.1	MA0024.1	0.157
MA0025.1	MA0025.1	0.148
MA0027.1	MA0027.1	0.833
MA0028.1	MA0028.1	7.1965e-6
MA0029.1	MA0029.1	0.379
MA0030.1	MA0030.1	0.115
MA0031.1	MA0031.1	0.319
MA0035.2	MA0035.2	0.00419
MA0038.1	MA0038.1	0.689
MA0039.2	MA0039.2	0.0933
MA0040.1	MA0040.1	0.786
MA0041.1	MA0041.1	0.235
MA0042.1	MA0042.1	0.258
MA0043.1	MA0043.1	0.772
MA0046.1	MA0046.1	0.141
MA0047.2	MA0047.2	0.37
MA0048.1	MA0048.1	0.0327
MA0050.1	MA0050.1	0.00754
MA0051.1	MA0051.1	0.0354
MA0052.1	MA0052.1	0.0411
MA0055.1	MA0055.1	0.00685
MA0057.1	MA0057.1	0.177
MA0058.1	MA0058.1	1.75281e-9
MA0059.1	MA0059.1	0.00585
MA0060.1	MA0060.1	0.565
MA0061.1	MA0061.1	0.0168
MA0062.2	MA0062.2	4.82185e-6
MA0065.2	MA0065.2	0.842
MA0066.1	MA0066.1	0.308
MA0067.1	MA0067.1	0.0995
MA0068.1	MA0068.1	0.625
MA0069.1	MA0069.1	0.593
MA0070.1	MA0070.1	0.239
MA0071.1	MA0071.1	0.413
MA0072.1	MA0072.1	0.759
MA0073.1	MA0073.1	0.693
MA0074.1	MA0074.1	0.746
MA0076.1	MA0076.1	1.86872e-5
MA0077.1	MA0077.1	0.187
MA0078.1	MA0078.1	0.0957
MA0079.2	MA0079.2	0.00789
MA0080.2	MA0080.2	0.00154
MA0081.1	MA0081.1	0.848
MA0083.1	MA0083.1	0.533
MA0084.1	MA0084.1	0.668
MA0087.1	MA0087.1	0.957
MA0088.1	MA0088.1	0.0224
MA0090.1	MA0090.1	0.0658
MA0091.1	MA0091.1	0.0754
MA0092.1	MA0092.1	0.0617
MA0093.1	MA0093.1	1.00656e-5
MA0099.2	MA0099.2	2.68707e-13
MA0100.1	MA0100.1	0.11
MA0101.1	MA0101.1	0.374
MA0102.2	MA0102.2	0.838
MA0103.1	MA0103.1	0.011
MA0104.2	MA0104.2	4.10449e-4
MA0105.1	MA0105.1	0.31
MA0106.1	MA0106.1	0.0679
MA0107.1	MA0107.1	0.0731
MA0108.2	MA0108.2	1.31147e-4
MA0111.1	MA0111.1	0.74
MA0112.2	MA0112.2	0.0051
MA0113.1	MA0113.1	0.0801
MA0114.1	MA0114.1	0.803
MA0115.1	MA0115.1	0.724
MA0116.1	MA0116.1	0.0364
MA0117.1	MA0117.1	0.597
MA0119.1	MA0119.1	0.226
MA0122.1	MA0122.1	0.649
MA0124.1	MA0124.1	0.482
MA0125.1	MA0125.1	0.396
MA0131.1	MA0131.1	0.435
MA0135.1	MA0135.1	0.367
MA0136.1	MA0136.1	0.854
MA0137.2	MA0137.2	0.539
MA0138.2	MA0138.2	0.0575
MA0139.1	MA0139.1	0.769
MA0140.1	MA0140.1	0.178
MA0141.1	MA0141.1	0.301
MA0142.1	MA0142.1	0.0463
MA0143.1	MA0143.1	0.574
MA0144.1	MA0144.1	0.248
MA0145.1	MA0145.1	0.108
MA0146.1	MA0146.1	0.316
MA0147.1	MA0147.1	0.00541
MA0148.1	MA0148.1	0.581
MA0149.1	MA0149.1	0.137
MA0150.1	MA0150.1	0.0724
MA0152.1	MA0152.1	0.826
MA0153.1	MA0153.1	0.883
MA0154.1	MA0154.1	0.0328
MA0155.1	MA0155.1	0.154
MA0156.1	MA0156.1	0.0138
MA0157.1	MA0157.1	0.224
MA0159.1	MA0159.1	0.731
MA0160.1	MA0160.1	0.292
MA0162.1	MA0162.1	0.799
MA0163.1	MA0163.1	0.172
MA0164.1	MA0164.1	0.154
MA0258.1	MA0258.1	0.0059
MA0259.1	MA0259.1	0.0668

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: "CNhs11245This sample isn't target for the analysis
library id: CNhs11183

Novel motif	Logo	P-value
1	1	0.896
10	10	0.0761
100	100	0.529
101	101	0.72
102	102	0.748
103	103	0.703
104	104	0.725
105	105	0.744
106	106	8.98319e-4
107	107	0.367
108	108	0.376
109	109	0.693
11	11	0.703
110	110	0.55
111	111	0.16
112	112	0.203
113	113	0.0401
114	114	0.722
115	115	0.0956
116	116	0.212
117	117	0.457
118	118	0.87
119	119	0.0392
12	12	0.522
120	120	0.468
121	121	0.436
122	122	0.733
123	123	0.656
124	124	0.954
125	125	0.387
126	126	0.199
127	127	0.489
128	128	0.0105
129	129	0.396
13	13	0.525
130	130	0.245
131	131	0.307
132	132	0.801
133	133	0.272
134	134	0.197
135	135	0.537
136	136	0.942
137	137	0.837
138	138	0.946
139	139	0.284
14	14	0.407
140	140	0.33
141	141	0.425
142	142	0.018
143	143	0.417
144	144	0.838
145	145	0.439
146	146	0.492
147	147	0.565
148	148	0.201
149	149	0.0725
15	15	0.916
150	150	0.794
151	151	0.427
152	152	0.0409
153	153	0.421
154	154	0.994
155	155	0.018
156	156	0.457
157	157	0.626
158	158	0.492
159	159	0.184
16	16	0.408
160	160	0.248
161	161	0.509
162	162	0.71
163	163	0.696
164	164	0.139
165	165	0.379
166	166	0.877
167	167	0.676
168	168	0.241
169	169	0.117
17	17	0.476
18	18	0.175
19	19	0.16
2	2	0.0921
20	20	0.18
21	21	0.347
22	22	0.136
23	23	0.263
24	24	0.217
25	25	0.258
26	26	0.502
27	27	0.134
28	28	0.929
29	29	0.366
3	3	0.871
30	30	0.243
31	31	0.214
32	32	0.00246
33	33	0.344
34	34	0.373
35	35	0.872
36	36	0.0635
37	37	0.868
38	38	0.544
39	39	0.566
4	4	0.0335
40	40	0.728
41	41	0.917
42	42	0.697
43	43	0.349
44	44	0.196
45	45	0.131
46	46	0.397
47	47	0.934
48	48	0.961
49	49	0.267
5	5	0.125
50	50	0.916
51	51	0.41
52	52	0.0549
53	53	0.758
54	54	0.324
55	55	0.354
56	56	0.898
57	57	0.533
58	58	0.071
59	59	0.103
6	6	0.539
60	60	0.0512
61	61	0.785
62	62	0.0411
63	63	0.538
64	64	0.52
65	65	0.308
66	66	0.219
67	67	0.873
68	68	0.546
69	69	0.447
7	7	0.276
70	70	0.112
71	71	0.874
72	72	0.486
73	73	0.588
74	74	0.304
75	75	0.925
76	76	0.0918
77	77	0.301
78	78	0.386
79	79	0.417
8	8	0.174
80	80	0.727
81	81	0.827
82	82	0.0726
83	83	0.413
84	84	0.538
85	85	0.105
86	86	0.951
87	87	0.569
88	88	0.804
89	89	0.0176
9	9	0.502
90	90	0.0919
91	91	0.529
92	92	0.216
93	93	0.469
94	94	0.652
95	95	0.234
96	96	0.705
97	97	0.99
98	98	0.494
99	99	0.423

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: "CNhs11245
library id: CNhs11183

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103225 neurilemoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103225 (neurilemoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

@@ Line 10: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.13!201.10!IFI16;;chr12:66218598..66218645,+!p2@HMGA2!1.81!282.31!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!1.60!38.52!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!1.57!321.60!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.50!30.93!RFX8;;chr1:158985469..158985489,+!p7@IFI16!1.45!31.96!IFI16;;chr17:46688334..46688385,-!p1@HOXB7!1.38!33.32!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.26!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.31!28.38!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.73!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!1.29!27.27!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.49!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.58!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.62!HOXA3;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.68!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.24!16.53!HOXA7;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.05!PRDM8;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.79!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.13!19.00!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.53!HOXA9;;chr12:66218904..66218913,+!p11@HMGA2!1.13!12.44!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.44!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!1.11!11.84!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.76!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!1.10!35.96!IFI16;;chr1:170632439..170632465,+!p11@PRRX1!1.10!11.50!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!1.09!11.16!HOXA9;;chr3:181429741..181429767,+!p2@SOX2!1.09!11.16!SOX2;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.55!TBX18;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.67!HHEX;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.65!HOXC9;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.48!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.38!TCF12;;chr6:45296048..45296082,+!p1@RUNX2!1.05!11.76!RUNX2;;chr1:158985457..158985468,+!p12@IFI16!1.05!10.14!IFI16;;chr3:181429704..181429722,+!p1@SOX2!1.05!10.14!SOX2;;chr1:170632723..170632739,+!p8@PRRX1!1.04!10.06!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.03!29.14!MSX1;;chr2:223163706..223163730,-!p1@PAX3!1.03!9.71!PAX3;;chr7:35293685..35293718,-!p1@TBX20!1.03!9.63!TBX20;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.82!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!1.02!9.54!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.01!43.20!FOXD1;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.20!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!240.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.00!48.49!ETV1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.40!BNC1;;chr17:46622440..46622477,-!p5@HOXB2!1.00!10.06!HOXB2;;chr1:170632115..170632136,+!p9@PRRX1!1.00!8.95!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.32!FOXD1;;chr12:66218443..66218461,+!p8@HMGA2!0.98!10.99!HMGA2;;chr1:158985553..158985574,+!p14@IFI16!0.98!8.52!IFI16;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.44!LHX2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.33!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.94!12.95!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.75!HOXA11;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.75!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!28.21!BHLHE41;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.37!HOXC4;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.35!PRRX1;;chr2:74741569..74741620,+!p1@TLX2!0.91!7.16!TLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.91!7.07!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.01!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.19!TWIST2;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.32!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.75!ZNF90;;chr13:79177674..79177701,-!p1@POU4F1!0.89!6.82!POU4F1;;chr6:34204672..34204692,+!p1@HMGA1!0.88!789.42!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.11!HMGA1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.04!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.88!8.10!ZBTB38;;chr2:102091590..102091601,-!p5@RFX8!0.88!6.65!RFX8;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!28.46!LRRFIP2;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.90!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.87!6.48!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.31!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.97!FOSL1;;chr1:158985536..158985545,+!p18@IFI16!0.85!6.05!IFI16;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.54!SNAI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.83!13.46!BHLHB9;;chr2:200322654..200322707,-!p2@SATB2!0.83!8.69!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.82!5.62!ZIC1;;chr1:170632137..170632172,+!p10@PRRX1!0.82!5.62!PRRX1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.68!HHEX;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.37!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.80!5.37!ZBTB38;;chr2:102091478..102091490,-!p3@RFX8!0.80!5.28!RFX8;;chr3:185826764..185826803,-!p2@ETV5!0.79!20.79!ETV5;;chr17:46655704..46655718,-!p2@HOXB4!0.79!8.10!HOXB4;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.96!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.79!5.20!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.20!POU4F1;;chr9:16705069..16705086,-!p3@BNC2!0.79!5.11!BNC2;;chr10:31288398..31288455,-!p2@ZNF438!0.78!5.88!ZNF438;;chr11:31832658..31832681,-!p1@PAX6!0.77!4.94!PAX6;;chr7:27196217..27196246,-!p2@HOXA7!0.77!4.94!HOXA7;;chr3:147111198..147111225,+!p4@ZIC1!0.77!4.94!ZIC1;;chr12:66218469..66218477,+!p16@HMGA2!0.77!4.86!HMGA2;;chr2:101436564..101436647,+!p1@NPAS2!0.76!106.60!NPAS2;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.16!IFI16;;chr9:132427972..132428056,+!p1@PRRX2!0.76!6.48!PRRX2;;chr19:22235279..22235301,+!p1@ZNF257!0.75!9.20!ZNF257;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.69!HOXC8;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.69!ZFY;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.52!ZFP106;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.52!FOXL2;;chr5:178368186..178368238,+!p1@ZNF454!0.73!8.35!ZNF454;;chr12:26277929..26277955,-!p3@BHLHE41!0.73!6.56!BHLHE41;;chr3:168865194..168865245,-!p3@MECOM!0.73!5.79!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr16:67198633..67198671,+!p1@HSF4!0.73!4.35!HSF4;;chr17:46692457..46692484,-!p2@HOXB8!0.72!4.26!HOXB8;;chr2:102091514..102091528,-!p6@RFX8!0.72!4.26!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.26!DLX1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.71!9.63!SOHLH2;;chr15:96875657..96875760,+!p14@NR2F2!0.71!7.16!NR2F2;;chr16:67198683..67198698,+!p2@HSF4!0.71!4.18!HSF4;;chr17:46691732..46691766,-!p4@HOXB8!0.71!4.18!HOXB8;;chr7:63505799..63505904,+!p1@ZNF727!0.71!4.09!ZNF727;;chr12:57914286..57914304,-!p1@DDIT3!0.70!166.17!DDIT3;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.84!DLX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.69!3.92!HOXC5;;chr17:46688310..46688323,-!p4@HOXB7!0.69!3.92!HOXB7;;chr3:141150883..141150961,+!p6@ZBTB38!0.68!3.83!ZBTB38;;chr7:27195867..27195893,-!p3@HOXA7!0.68!3.75!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.75!HOXA10;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.75!TBX15;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.75!CSDA;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.85!SIX1;;chr2:113993052..113993097,-!p2@PAX8!0.67!9.20!PAX8;;chr3:185826814..185826825,-!p3@ETV5!0.67!7.24!ETV5;;chr14:29236269..29236285,+!p3@FOXG1!0.67!3.66!FOXG1;;chr8:23564065..23564087,-!p1@NKX2-6!0.67!3.66!NKX2-6;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.66!HOXB13;;chr6:45390025..45390076,+!p2@RUNX2!0.66!9.46!RUNX2;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.75!ZNF334;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.58!PAX9;;chr3:147111231..147111281,+!p3@ZIC1!0.66!3.58!ZIC1;;chr4:26323870..26323885,+!p13@RBPJ!0.66!3.58!RBPJ;;chr9:132427883..132427951,+!p2@PRRX2!0.66!3.58!PRRX2;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.58!HOXB6;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.62!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.65!3.49!HOXB9;;chr10:35484804..35484902,+!p2@CREM!0.64!14.74!CREM;;chr7:113726357..113726443,+!p1@FOXP2!0.64!6.22!FOXP2;;chr17:46622229..46622257,-!p6@HOXB2!0.64!4.09!HOXB2;;chr3:25470156..25470227,+!p2@RARB!0.64!3.41!RARB;;chr3:147110055..147110129,-!p1@ZIC4!0.64!3.32!ZIC4;;chr15:83953373..83953386,-!p2@BNC1!0.64!3.32!BNC1;;chr7:27205175..27205184,-!p3@HOXA9!0.64!3.32!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.63!80.27!SNAI2;;chr2:208394817..208394834,+!p3@CREB1!0.63!15.17!CREB1;;chr19:16435625..16435682,+!p1@KLF2!0.62!121.68!KLF2;;chrX:101975619..101975641,+!p2@BHLHB9!0.62!6.22!BHLHB9;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.15!HOXA5;;chr6:34205372..34205412,+!p5@HMGA1!0.60!17.89!HMGA1;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.48!CSDA;;chr12:80085255..80085284,-!p9@PAWR!0.60!4.60!PAWR;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.58!HOXB2;;chr7:14028488..14028516,-!p2@ETV1!0.60!3.41!ETV1;;chr5:137801160..137801176,+!p1@EGR1!0.59!353.38!EGR1;;chr12:50478977..50479040,+!p1@SMARCD1!0.59!77.89!SMARCD1;;chr4:26322267..26322334,+!p3@RBPJ!0.59!7.92!RBPJ;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.26!HOXB7;;chr12:26277817..26277863,-!p2@BHLHE41!0.59!4.18!BHLHE41;;chr12:77459306..77459365,-!p1@E2F7!0.58!43.03!E2F7;;chr5:137804484..137804498,+!p2@EGR1!0.58!13.29!EGR1;;chr1:43148792..43148849,+!p2@YBX1!0.58!12.70!YBX1;;chr16:4323015..4323067,-!p2@TFAP4!0.58!8.95!TFAP4;;chr19:38042240..38042309,+!p2@ZNF540!0.58!4.69!ZNF540;;chr1:170633058..170633084,+!p5@PRRX1!0.58!2.81!PRRX1;;chr17:35767301..35767344,+!p2@TADA2A!0.57!7.58!TADA2A;;chr4:206390..206444,+!p1@ZNF876P!0.57!5.37!ZNF876P;;chr2:100721328..100721348,-!p4@AFF3!0.57!2.73!AFF3;;chr2:172950227..172950249,+!p2@DLX1!0.57!2.73!DLX1;;chr17:46703942..46703964,-!p4@HOXB9!0.57!2.73!HOXB9;;chr3:37217756..37217844,-!p1@LRRFIP2!0.56!211.84!LRRFIP2;;chr7:4815238..4815327,+!p1@KIAA0415!0.56!73.03!AP5Z1;;chr17:46655730..46655791,-!p1@HOXB4!0.56!7.58!HOXB4;;chr5:132299572..132299623,-!p6@AFF4!0.56!5.28!AFF4;;chr4:81104895..81104920,+!p2@PRDM8!0.56!4.35!PRDM8;;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@@ Line 45: / Line 45: @@
 |is_a=EFO:0002091;;FF:0000210;;FF:0103225
 |is_obsolete=
-|library_id=CNhs11245!CNhs11183
+|library_id=CNhs11245
-|library_id_phase_based=1:CNhs11183,CNhs11245
+|library_id_phase_based=2:CNhs11245
 |name=schwannoma cell line:HS-PSS
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=NCig10058,,,
-|profile_hcage=CNhs11245 & CNhs11183,LSID757,release008,COMPLETED
+|profile_hcage="CNhs11245 & CNhs11183,LSID757,release008,COMPLETED"
-|profile_rnaseq=,,,
+|profile_rnaseq=
-|profile_srnaseq=,,,
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FF:10442-106F1: Difference between revisions

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Revision as of 16:40, 27 November 2014

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0