FFCP PHASE1:Mm9::chr17:36005563..36005592,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=374|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:36005563..36005592,+|id=chr17:36005563..36005592,+|ontology_enrichment_celltype=CL:0000988!4.48e-09!32;CL:0002032!4.48e-09!32;CL:0000037!4.48e-09!32;CL:0000566!4.48e-09!32;CL:0000837!4.48e-09!32;CL:0000034!2.86e-08!97;CL:0000838!4.75e-08!12;CL:0000084!2.12e-07!11;CL:0000827!2.12e-07!11;CL:0002031!3.44e-07!25;CL:0000542!3.82e-07!13;CL:0000051!3.82e-07!13;CL:0000219!4.30e-07!54;CL:0000738!8.06e-07!17;CL:0002087!8.06e-07!17;CL:0002320!8.18e-07!46;CL:0000134!8.18e-07!46|ontology_enrichment_celltype_v019_2=CL:0000988,2.85e-15,32;CL:0002032,2.85e-15,32;CL:0000037,2.85e-15,32;CL:0000837,2.85e-15,32;CL:0000034,6.59e-13,97;CL:0002320,2.49e-12,46;CL:0000134,2.49e-12,46;CL:0002031,3.44e-12,25;CL:0000219,5.99e-12,54;CL:0000838,1.30e-11,12;CL:0000738,1.28e-10,17;CL:0002087,1.28e-10,17;CL:0000084,1.30e-10,11;CL:0000827,1.30e-10,11;CL:0000542,2.18e-10,13;CL:0000051,2.18e-10,13;CL:0000723,9.55e-10,91;CL:0000048,9.55e-10,91;CL:0000791,5.46e-09,9;CL:0000789,5.46e-09,9;CL:0002420,5.46e-09,9;CL:0002419,5.46e-09,9;CL:0000790,5.46e-09,9;CL:0000624,4.05e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!4.49e-16!48;UBERON:0002390!1.64e-14!45;UBERON:0003061!1.64e-14!45;UBERON:0003081!1.01e-12!88;UBERON:0004177!2.26e-10!29;UBERON:0003408!2.45e-08!24;UBERON:0002370!4.00e-08!23;UBERON:0000974!4.00e-08!23;UBERON:0004807!4.00e-08!23;UBERON:0005058!4.00e-08!23;UBERON:0003351!4.00e-08!23;UBERON:0009113!4.00e-08!23;UBERON:0003295!4.00e-08!23;UBERON:0009722!4.00e-08!23;UBERON:0005562!4.00e-08!23;UBERON:0007690!4.00e-08!23;UBERON:0002405!8.06e-08!70;UBERON:0002204!1.76e-07!32;UBERON:0006562!3.36e-07!24;UBERON:0001557!3.36e-07!24;UBERON:0001042!3.36e-07!24;UBERON:0008814!3.36e-07!24;UBERON:0009145!3.36e-07!24;UBERON:0002384!8.18e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.86e-22,48;UBERON:0002405,2.86e-22,48;UBERON:0002390,6.78e-20,45;UBERON:0003061,6.78e-20,45;UBERON:0004177,2.05e-15,29;UBERON:0005057,2.05e-15,29;UBERON:0000077,2.13e-13,35;UBERON:0003408,3.42e-13,24;UBERON:0002370,7.21e-13,23;UBERON:0000974,7.21e-13,23;UBERON:0004807,7.21e-13,23;UBERON:0005058,7.21e-13,23;UBERON:0003351,7.21e-13,23;UBERON:0009113,7.21e-13,23;UBERON:0003295,7.21e-13,23;UBERON:0009722,7.21e-13,23;UBERON:0005562,7.21e-13,23;UBERON:0007690,7.21e-13,23;UBERON:0002384,2.49e-12,46;UBERON:0006562,4.88e-12,24;UBERON:0001557,4.88e-12,24;UBERON:0001042,4.88e-12,24;UBERON:0008814,4.88e-12,24;UBERON:0009145,4.88e-12,24;UBERON:0003081,1.01e-11,87;UBERON:0000072,6.15e-10,27;UBERON:0002204,9.42e-09,32;UBERON:0001004,6.10e-08,42;UBERON:0000065,1.25e-07,41;UBERON:0000926,1.59e-07,120;UBERON:0004120,1.59e-07,120;UBERON:0006603,1.59e-07,120|phase1_expression=0,0,0,0,0,0,0,10.2007425518845,21.2590970449017,45.1744535801447,1.36974374580404,3.43020283679947,9.41604014621631,8.74204024189974,3.99731714178795,2.63217847606774,0.699561878128147,12.4607555316504,15.219702130237,12.7316895539409,0.255129870453209,5.85816612085223,4.4403964153619,3.67982572424835,5.50582274561208,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,20.0895182753716,11.720030167857,10.470474879476,15.2940186888064,12.9778642142105,12.1377588257788,0.377690453926732,0.912392380975631,3.12029478674859,1.56478268869608,0.218025156380447,1.09843091367236,0.777719596297134,0.839918529752175,0,13.2548258785612,7.25362142011344,6.38578218370682,2.82985379639542,1.43266719969378,1.03134418455488,0.404632921719196,0.528990979272033,0.633831403506179,2.37191172448392,2.66788438833342,2.2497492932035,0.988866362566974,0.7104801149461,1.79760066311043,1.92109152660777,0.311068836925433,0.135005938331691,0,1.42825492201902,1.54607978666129,0.122490799214954,0.575072826109418,0.919218786610021,0,0.127687338085188,0.153606533256243,0.263772575460388,0.0914876436024097,0.52091337055676,0.279182999001381,0,0.916789486660861,0.589257170947335,0.569486723196412,0.186399445825301,1.59025005999687,1.058001841495,1.44932244350839,0,0,0,0,0,0.421333260395256,1.36344258062446,0.259786004602869,0.35333957451034,0.14084341977668,2.56652954828636,0,0,0.432982082022428,0.760079596425296,0,0.5709193985953,3.88406825470758,0.445326417194474,0.346970653532272,1.21786191324856,0.230615497256059,0.452167921657868,0.352766121407114,0.125666591329675,0.247194967734374,0.722996784599558,2.65383165584962,1.13236794963186,1.76673214768315,1.45462575940567,0,0.292780797011547,0,0.510914110417183,11.6220670770743,5.99902730993408,10.6738990741374,0.149790639404823,0,0.879580464790051,0.173824320192276,0.255715457330331,0.20778804455956,0,0.611036183101898,2.23932547098167,1.51633655060205,0.420883711772948,0.520481771850815,0.459804208866946,0.180062129805349,0.30140963567143,0.204109497453984,0,0.187403449119458,0,0.215567992932842,0.378212160335639,0.527853372491847,0,0.278047249225598,0.348252166522167,0.411564272815887,0.398068533636986,2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=374 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:36005563..36005592,+ | |||
|description=CAGE_peak_at_chr17:36005563..36005592,+ | |||
|id=chr17:36005563..36005592,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.48e-09!32;CL:0002032!4.48e-09!32;CL:0000037!4.48e-09!32;CL:0000566!4.48e-09!32;CL:0000837!4.48e-09!32;CL:0000034!2.86e-08!97;CL:0000838!4.75e-08!12;CL:0000084!2.12e-07!11;CL:0000827!2.12e-07!11;CL:0002031!3.44e-07!25;CL:0000542!3.82e-07!13;CL:0000051!3.82e-07!13;CL:0000219!4.30e-07!54;CL:0000738!8.06e-07!17;CL:0002087!8.06e-07!17;CL:0002320!8.18e-07!46;CL:0000134!8.18e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.85e-15,32;CL:0002032,2.85e-15,32;CL:0000037,2.85e-15,32;CL:0000837,2.85e-15,32;CL:0000034,6.59e-13,97;CL:0002320,2.49e-12,46;CL:0000134,2.49e-12,46;CL:0002031,3.44e-12,25;CL:0000219,5.99e-12,54;CL:0000838,1.30e-11,12;CL:0000738,1.28e-10,17;CL:0002087,1.28e-10,17;CL:0000084,1.30e-10,11;CL:0000827,1.30e-10,11;CL:0000542,2.18e-10,13;CL:0000051,2.18e-10,13;CL:0000723,9.55e-10,91;CL:0000048,9.55e-10,91;CL:0000791,5.46e-09,9;CL:0000789,5.46e-09,9;CL:0002420,5.46e-09,9;CL:0002419,5.46e-09,9;CL:0000790,5.46e-09,9;CL:0000624,4.05e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.49e-16!48;UBERON:0002390!1.64e-14!45;UBERON:0003061!1.64e-14!45;UBERON:0003081!1.01e-12!88;UBERON:0004177!2.26e-10!29;UBERON:0003408!2.45e-08!24;UBERON:0002370!4.00e-08!23;UBERON:0000974!4.00e-08!23;UBERON:0004807!4.00e-08!23;UBERON:0005058!4.00e-08!23;UBERON:0003351!4.00e-08!23;UBERON:0009113!4.00e-08!23;UBERON:0003295!4.00e-08!23;UBERON:0009722!4.00e-08!23;UBERON:0005562!4.00e-08!23;UBERON:0007690!4.00e-08!23;UBERON:0002405!8.06e-08!70;UBERON:0002204!1.76e-07!32;UBERON:0006562!3.36e-07!24;UBERON:0001557!3.36e-07!24;UBERON:0001042!3.36e-07!24;UBERON:0008814!3.36e-07!24;UBERON:0009145!3.36e-07!24;UBERON:0002384!8.18e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.86e-22,48;UBERON:0002405,2.86e-22,48;UBERON:0002390,6.78e-20,45;UBERON:0003061,6.78e-20,45;UBERON:0004177,2.05e-15,29;UBERON:0005057,2.05e-15,29;UBERON:0000077,2.13e-13,35;UBERON:0003408,3.42e-13,24;UBERON:0002370,7.21e-13,23;UBERON:0000974,7.21e-13,23;UBERON:0004807,7.21e-13,23;UBERON:0005058,7.21e-13,23;UBERON:0003351,7.21e-13,23;UBERON:0009113,7.21e-13,23;UBERON:0003295,7.21e-13,23;UBERON:0009722,7.21e-13,23;UBERON:0005562,7.21e-13,23;UBERON:0007690,7.21e-13,23;UBERON:0002384,2.49e-12,46;UBERON:0006562,4.88e-12,24;UBERON:0001557,4.88e-12,24;UBERON:0001042,4.88e-12,24;UBERON:0008814,4.88e-12,24;UBERON:0009145,4.88e-12,24;UBERON:0003081,1.01e-11,87;UBERON:0000072,6.15e-10,27;UBERON:0002204,9.42e-09,32;UBERON:0001004,6.10e-08,42;UBERON:0000065,1.25e-07,41;UBERON:0000926,1.59e-07,120;UBERON:0004120,1.59e-07,120;UBERON:0006603,1.59e-07,120 | |||
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| |||
|short_description=p@chr17:36005563..36005592,+ | |||
}} |
Latest revision as of 20:17, 4 August 2015
Short description: | p@chr17:36005563..36005592, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:36005563..36005592, + |
Coexpression cluster: | MCL_coexpression_mm9:374 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.85e-15 | 32 |
hematopoietic oligopotent progenitor cell | 2.85e-15 | 32 |
hematopoietic stem cell | 2.85e-15 | 32 |
hematopoietic multipotent progenitor cell | 2.85e-15 | 32 |
stem cell | 6.59e-13 | 97 |
connective tissue cell | 2.49e-12 | 46 |
mesenchymal cell | 2.49e-12 | 46 |
hematopoietic lineage restricted progenitor cell | 3.44e-12 | 25 |
motile cell | 5.99e-12 | 54 |
lymphoid lineage restricted progenitor cell | 1.30e-11 | 12 |
leukocyte | 1.28e-10 | 17 |
nongranular leukocyte | 1.28e-10 | 17 |
T cell | 1.30e-10 | 11 |
pro-T cell | 1.30e-10 | 11 |
lymphocyte | 2.18e-10 | 13 |
common lymphoid progenitor | 2.18e-10 | 13 |
somatic stem cell | 9.55e-10 | 91 |
multi fate stem cell | 9.55e-10 | 91 |
mature alpha-beta T cell | 5.46e-09 | 9 |
alpha-beta T cell | 5.46e-09 | 9 |
immature T cell | 5.46e-09 | 9 |
mature T cell | 5.46e-09 | 9 |
immature alpha-beta T cell | 5.46e-09 | 9 |
CD4-positive, alpha-beta T cell | 4.05e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.86e-22 | 48 |
immune system | 2.86e-22 | 48 |
hematopoietic system | 6.78e-20 | 45 |
blood island | 6.78e-20 | 45 |
hemopoietic organ | 2.05e-15 | 29 |
immune organ | 2.05e-15 | 29 |
mixed endoderm/mesoderm-derived structure | 2.13e-13 | 35 |
gland of gut | 3.42e-13 | 24 |
thymus | 7.21e-13 | 23 |
neck | 7.21e-13 | 23 |
respiratory system epithelium | 7.21e-13 | 23 |
hemolymphoid system gland | 7.21e-13 | 23 |
pharyngeal epithelium | 7.21e-13 | 23 |
thymic region | 7.21e-13 | 23 |
pharyngeal gland | 7.21e-13 | 23 |
entire pharyngeal arch endoderm | 7.21e-13 | 23 |
thymus primordium | 7.21e-13 | 23 |
early pharyngeal endoderm | 7.21e-13 | 23 |
connective tissue | 2.49e-12 | 46 |
pharynx | 4.88e-12 | 24 |
upper respiratory tract | 4.88e-12 | 24 |
chordate pharynx | 4.88e-12 | 24 |
pharyngeal arch system | 4.88e-12 | 24 |
pharyngeal region of foregut | 4.88e-12 | 24 |
lateral plate mesoderm | 1.01e-11 | 87 |
segment of respiratory tract | 6.15e-10 | 27 |
musculoskeletal system | 9.42e-09 | 32 |
respiratory system | 6.10e-08 | 42 |
respiratory tract | 1.25e-07 | 41 |
mesoderm | 1.59e-07 | 120 |
mesoderm-derived structure | 1.59e-07 | 120 |
presumptive mesoderm | 1.59e-07 | 120 |