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FF:457-17C6

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Name:heart, embryo E16
Species:Mouse (Mus musculus)
Library ID:CNhs11021
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueheart
dev stage16 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005268
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11021 CAGE DRX008976 DRR009850
Accession ID Mm9

Library idBAMCTSS
CNhs11021 DRZ001275 DRZ002658
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

CNhs11021

00
10
100.248
1000
10000.304
10010.297
10020.412
10030.0211
10040
1005-0.151
10060.279
10070.0272
10080
10090.104
101-0.0179
10100
1011-0.0231
10120.117
1013-0.207
10140.563
10150.0448
10160.109
10170
10180
10190
1020
10200
10210
10220.455
10230
10240.158
10250.048
10260
10270
10280.0623
10290.186
1030.201
10300
10310.255
10320.0264
1033-0.00419
10340
10350.611
1036-0.0614
10370
10380.0704
10390.172
1040
10400.102
10410



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11021

Jaspar motifP-value
MA0002.20.0159
MA0003.10.283
MA0004.10.233
MA0006.10.942
MA0007.10.397
MA0009.10.932
MA0014.10.54
MA0017.10.00392
MA0018.20.0119
MA0019.10.298
MA0024.10.0196
MA0025.10.081
MA0027.10.183
MA0028.10.365
MA0029.10.484
MA0030.10.0421
MA0031.10.0389
MA0035.20.377
MA0038.10.8
MA0039.20.0151
MA0040.10.0532
MA0041.10.148
MA0042.10.284
MA0043.10.0578
MA0046.16.52461e-18
MA0047.20.0173
MA0048.10.00235
MA0050.12.84269e-4
MA0051.10.00541
MA0052.15.30868e-22
MA0055.16.61484e-4
MA0057.10.938
MA0058.10.305
MA0059.10.943
MA0060.10.243
MA0061.10.485
MA0062.21.33677e-5
MA0065.20.279
MA0066.10.959
MA0067.10.343
MA0068.10.333
MA0069.10.156
MA0070.10.566
MA0071.10.658
MA0072.10.127
MA0073.10.853
MA0074.10.582
MA0076.10.0149
MA0077.10.647
MA0078.10.49
MA0079.20.228
MA0080.20.00221
MA0081.10.726
MA0083.11.50926e-14
MA0084.10.947
MA0087.10.64
MA0088.10.54
MA0090.10.00296
MA0091.10.472
MA0092.10.76
MA0093.10.234
MA0099.21.38797e-7
MA0100.10.562
MA0101.10.116
MA0102.20.0106
MA0103.11.45106e-5
MA0104.20.668
MA0105.10.0726
MA0106.10.638
MA0107.10.109
MA0108.20.892
MA0111.10.525
MA0112.20.0268
MA0113.10.471
MA0114.13.71219e-4
MA0115.10.499
MA0116.10.857
MA0117.10.562
MA0119.10.0305
MA0122.10.998
MA0124.10.319
MA0125.10.596
MA0131.10.396
MA0135.10.0393
MA0136.15.40156e-4
MA0137.20.00984
MA0138.20.481
MA0139.10.52
MA0140.10.154
MA0141.18.13072e-6
MA0142.10.269
MA0143.10.905
MA0144.10.21
MA0145.10.217
MA0146.10.894
MA0147.10.618
MA0148.10.0636
MA0149.10.151
MA0150.10.00162
MA0152.10.624
MA0153.12.47191e-11
MA0154.10.249
MA0155.10.239
MA0156.11.90176e-7
MA0157.10.163
MA0159.10.0374
MA0160.10.127
MA0162.10.119
MA0163.10.0805
MA0164.10.421
MA0258.10.478
MA0259.10.256



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11021

Novel motifP-value
10.515
100.615
1000.839
1010.914
1020.695
1030.835
1040.988
1050.677
1060.793
1070.692
1080.964
1090.501
110.704
1100.0544
1110.476
1120.361
1130.416
1140.958
1150.963
1160.521
1170.326
1180.389
1190.639
120.514
1200.247
1210.449
1220.133
1230.09
1240.728
1250.748
1260.905
1270.201
1280.309
1290.879
131.60022e-4
1300.288
1310.357
1320.834
1330.244
1340.661
1350.792
1360.0247
1370.576
1380.14
1390.88
140.89
1400.337
1410.732
1420.698
1430.559
1440.0774
1450.135
1460.383
1470.748
1480.858
1490.506
150.352
1500.178
1510.185
1520.491
1530.89
1540.831
1550.343
1560.00799
1570.705
1580.498
1590.0329
1600.0725
1610.561
1620.603
1630.804
1640.598
1650.163
1660.454
1670.925
1680.49
1690.00661
170.928
180.201
190.157
20.281
200.177
210.954
220.347
230.214
240.41
250.553
260.00838
270.21
280.22
290.482
30.683
300.0291
310.779
320.708
330.141
340.937
350.558
360.124
370.108
380.407
390.941
40.452
400.00322
410.789
420.779
430.57
440.788
450.038
460.744
470.986
480.954
490.379
50.47
500.31
510.85
520.922
530.446
540.665
550.152
560.882
570.186
580.653
590.232
60.137
600.96
610.629
620.497
630.539
640.731
650.344
660.434
670.625
680.455
690.47
70.232
700.101
710.0083
720.0883
730.644
740.395
750.796
760.501
770.728
780.379
790.591
80.699
800.0186
810.726
820.792
830.848
840.835
850.631
860.69
874.92412e-6
880.377
890.344
90.615
900.647
910.0974
920.883
930.331
940.152
950.658
960.352
970.161
980.549
990.712



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11021


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000299 (mouse embryonic day 16 sample)
0011356 (mouse heart- embryo E16 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

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