FFCP PHASE1:Hg19::chr11:74699913..74699940,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10825|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7760|TSSclassifier=S|UniProt=A8K327|association_with_transcript=-9bp_to_NM_006656,uc001ovw.2,uc010rrl.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_6_at_NEU3_5end|id=chr11:74699913..74699940,+|ontology_enrichment_celltype=CL:0002194!4.64e-21!63;CL:0000576!4.64e-21!63;CL:0000040!4.64e-21!63;CL:0000559!4.64e-21!63;CL:0002009!4.79e-21!65;CL:0000557!5.74e-21!71;CL:0000763!8.60e-21!112;CL:0000049!8.60e-21!112;CL:0000839!2.60e-20!70;CL:0000766!7.34e-18!76;CL:0000860!2.91e-16!45;CL:0002057!6.45e-16!42;CL:0000988!3.36e-14!182;CL:0002032!9.48e-14!165;CL:0000837!9.48e-14!165;CL:0000037!1.05e-13!172;CL:0000566!1.05e-13!172;CL:0002031!1.27e-11!124;CL:0000738!4.63e-11!140;CL:0002087!7.87e-11!119;CL:0000219!5.14e-07!390|ontology_enrichment_celltype_v019=CL:0000860;4.87e-47;33!CL:0002057;4.87e-47;33!CL:0000473;2.36e-44;39!CL:0000234;2.36e-44;39!CL:0000576;6.49e-29;48!CL:0000766;1.13e-21;69!CL:0000840;1.90e-11;5!CL:0000763;5.49e-10;100!CL:0000738;2.81e-09;136!CL:0000990;1.18e-07;8!CL:0002087;1.78e-07;104!CL:0000235;3.60e-07;6|ontology_enrichment_celltype_v019_2=CL:0002009,8.17e-59,61;CL:0002194,5.63e-57,59;CL:0000576,5.63e-57,59;CL:0000040,5.63e-57,59;CL:0000559,5.63e-57,59;CL:0000557,5.60e-53,67;CL:0000839,2.83e-50,66;CL:0000473,4.35e-46,48;CL:0000234,4.35e-46,48;CL:0000766,1.49e-45,72;CL:0000860,2.88e-40,42;CL:0002057,2.88e-40,42;CL:0000763,5.85e-35,108;CL:0000049,5.85e-35,108;CL:0002031,1.45e-26,120;CL:0002087,5.08e-26,115;CL:0000738,1.30e-22,136;CL:0002032,5.09e-21,161;CL:0000837,5.09e-21,161;CL:0000037,7.81e-20,168;CL:0000988,1.90e-18,177;CL:0000840,3.08e-11,5;CL:0001029,3.08e-11,5;CL:0000134,7.64e-09,354;CL:0002320,1.63e-08,361;CL:0000990,1.62e-07,8;CL:0000219,2.36e-07,386;CL:0000235,4.36e-07,6|ontology_enrichment_development_v019=CL:0002057;4.35e-30;42!CL:0000049;1.15e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.33e-20!80;UBERON:0001474!3.88e-20!86;UBERON:0004765!4.49e-16!101;UBERON:0001434!4.49e-16!101;UBERON:0002405!3.51e-15!115;UBERON:0002390!8.50e-15!102;UBERON:0003061!8.50e-15!102;UBERON:0002193!2.07e-12!112;UBERON:0002204!2.04e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.48e-49,76;UBERON:0001474,4.36e-45,82;UBERON:0004765,1.83e-40,90;UBERON:0002405,6.21e-39,93;UBERON:0002390,1.38e-36,98;UBERON:0003061,1.38e-36,98;UBERON:0001434,1.03e-35,100;UBERON:0002193,1.52e-32,108;UBERON:0002204,5.28e-20,167;UBERON:0003081,1.41e-17,203;UBERON:0000926,3.79e-11,315;UBERON:0004120,3.79e-11,315;UBERON:0006603,3.79e-11,315;UBERON:0002384,4.60e-08,371|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,2.01697543935533,0,0,0,0.369363174230364,0.408001382488506,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0.387336002901508,0.142169232487422,0.293600439334847,0.553995408531877,0.401088894940283,0,1.11957737119962,0.32389366601898,1.28787783817093,1.45398238779565,1.88937971844405,0.242584061187816,1.85943229524548,2.05583944010913,1.85823822537062,0.863077176966451,1.5369642391746,0.709446689665756,1.37898272294647,1.93645405075148,1.35426486594342,1.50593871634084,3.82068610080984,1.57306439111559,1.53041946185451,3.20929027076094,0,0,0.797854630486527,0.426224750532694,2.90209238628584,2.26954089876456,1.86846674698672,2.26123798731069,0.521482918420201,2.6062661364614,0.605399502633369,1.84138817993782,1.58231193720442,0.211255286311942,0,0.209658645508376,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0.950452044448374,0,0.127986611154418,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0.087834785693126,2.29213382120997,0,0,1.29818957461873,2.43781632218974,1.19662164466979,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0.560677600142307,1.06748995729705,0,0,0,0.163461903113459,0.454072282934794,0,0,0.312160076830321,0,0,0,0.323745888736263,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0.300476117813194,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0,0,0,0.675105328965065,0,0.757301322732344,0,0,1.06502877754984,0.10075209822764,0.169560592310488,0,0,0.573609190778008,0,0.397589304964456,0.116193942869518,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0,0.196221465125346,0,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0.882926198829301,0.122988438543114,0,0.439001141634502,0,0.100528972411631,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0,0,0,0,0,0.738651018262192,0.2340042651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,0,0.213233981900981,0.23806443146374,0.193766729508018,0.186224142887574,0.112131862580613,0.318235791390825,0,0,0.342233301085281,0.134704106029175,0,0,0,0.320182037633146,0,0,0,0.122241444182866,0.406896178315738,0,0,0|short_description=p6@NEU3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=10825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7760 | |||
|TSSclassifier=S | |||
|UniProt=A8K327 | |||
|association_with_transcript=-9bp_to_NM_006656,uc001ovw.2,uc010rrl.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_NEU3_5end | |||
|id=chr11:74699913..74699940,+ | |||
|ontology_enrichment_celltype=CL:0002194!4.64e-21!63;CL:0000576!4.64e-21!63;CL:0000040!4.64e-21!63;CL:0000559!4.64e-21!63;CL:0002009!4.79e-21!65;CL:0000557!5.74e-21!71;CL:0000763!8.60e-21!112;CL:0000049!8.60e-21!112;CL:0000839!2.60e-20!70;CL:0000766!7.34e-18!76;CL:0000860!2.91e-16!45;CL:0002057!6.45e-16!42;CL:0000988!3.36e-14!182;CL:0002032!9.48e-14!165;CL:0000837!9.48e-14!165;CL:0000037!1.05e-13!172;CL:0000566!1.05e-13!172;CL:0002031!1.27e-11!124;CL:0000738!4.63e-11!140;CL:0002087!7.87e-11!119;CL:0000219!5.14e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.87e-47;33!CL:0002057;4.87e-47;33!CL:0000473;2.36e-44;39!CL:0000234;2.36e-44;39!CL:0000576;6.49e-29;48!CL:0000766;1.13e-21;69!CL:0000840;1.90e-11;5!CL:0000763;5.49e-10;100!CL:0000738;2.81e-09;136!CL:0000990;1.18e-07;8!CL:0002087;1.78e-07;104!CL:0000235;3.60e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,8.17e-59,61;CL:0002194,5.63e-57,59;CL:0000576,5.63e-57,59;CL:0000040,5.63e-57,59;CL:0000559,5.63e-57,59;CL:0000557,5.60e-53,67;CL:0000839,2.83e-50,66;CL:0000473,4.35e-46,48;CL:0000234,4.35e-46,48;CL:0000766,1.49e-45,72;CL:0000860,2.88e-40,42;CL:0002057,2.88e-40,42;CL:0000763,5.85e-35,108;CL:0000049,5.85e-35,108;CL:0002031,1.45e-26,120;CL:0002087,5.08e-26,115;CL:0000738,1.30e-22,136;CL:0002032,5.09e-21,161;CL:0000837,5.09e-21,161;CL:0000037,7.81e-20,168;CL:0000988,1.90e-18,177;CL:0000840,3.08e-11,5;CL:0001029,3.08e-11,5;CL:0000134,7.64e-09,354;CL:0002320,1.63e-08,361;CL:0000990,1.62e-07,8;CL:0000219,2.36e-07,386;CL:0000235,4.36e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;4.35e-30;42!CL:0000049;1.15e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.33e-20!80;UBERON:0001474!3.88e-20!86;UBERON:0004765!4.49e-16!101;UBERON:0001434!4.49e-16!101;UBERON:0002405!3.51e-15!115;UBERON:0002390!8.50e-15!102;UBERON:0003061!8.50e-15!102;UBERON:0002193!2.07e-12!112;UBERON:0002204!2.04e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.48e-49,76;UBERON:0001474,4.36e-45,82;UBERON:0004765,1.83e-40,90;UBERON:0002405,6.21e-39,93;UBERON:0002390,1.38e-36,98;UBERON:0003061,1.38e-36,98;UBERON:0001434,1.03e-35,100;UBERON:0002193,1.52e-32,108;UBERON:0002204,5.28e-20,167;UBERON:0003081,1.41e-17,203;UBERON:0000926,3.79e-11,315;UBERON:0004120,3.79e-11,315;UBERON:0006603,3.79e-11,315;UBERON:0002384,4.60e-08,371 | |||
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| |||
|short_description=p6@NEU3 | |||
}} |
Revision as of 19:40, 10 September 2013
Short description: | p6@NEU3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_NEU3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -9bp_to_NM_006656, uc001ovw.2, uc010rrl.1_5end |
EntrezGene: | NEU3 |
HGNC: | 7760 |
UniProt: | A8K327 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 8.17e-59 | 61 |
monopoietic cell | 5.63e-57 | 59 |
monocyte | 5.63e-57 | 59 |
monoblast | 5.63e-57 | 59 |
promonocyte | 5.63e-57 | 59 |
granulocyte monocyte progenitor cell | 5.60e-53 | 67 |
myeloid lineage restricted progenitor cell | 2.83e-50 | 66 |
defensive cell | 4.35e-46 | 48 |
phagocyte | 4.35e-46 | 48 |
myeloid leukocyte | 1.49e-45 | 72 |
classical monocyte | 2.88e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.88e-40 | 42 |
myeloid cell | 5.85e-35 | 108 |
common myeloid progenitor | 5.85e-35 | 108 |
hematopoietic lineage restricted progenitor cell | 1.45e-26 | 120 |
nongranular leukocyte | 5.08e-26 | 115 |
leukocyte | 1.30e-22 | 136 |
hematopoietic oligopotent progenitor cell | 5.09e-21 | 161 |
hematopoietic multipotent progenitor cell | 5.09e-21 | 161 |
hematopoietic stem cell | 7.81e-20 | 168 |
hematopoietic cell | 1.90e-18 | 177 |
immature conventional dendritic cell | 3.08e-11 | 5 |
common dendritic progenitor | 3.08e-11 | 5 |
mesenchymal cell | 7.64e-09 | 354 |
connective tissue cell | 1.63e-08 | 361 |
conventional dendritic cell | 1.62e-07 | 8 |
motile cell | 2.36e-07 | 386 |
macrophage | 4.36e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.48e-49 | 76 |
bone element | 4.36e-45 | 82 |
skeletal element | 1.83e-40 | 90 |
immune system | 6.21e-39 | 93 |
hematopoietic system | 1.38e-36 | 98 |
blood island | 1.38e-36 | 98 |
skeletal system | 1.03e-35 | 100 |
hemolymphoid system | 1.52e-32 | 108 |
musculoskeletal system | 5.28e-20 | 167 |
lateral plate mesoderm | 1.41e-17 | 203 |
mesoderm | 3.79e-11 | 315 |
mesoderm-derived structure | 3.79e-11 | 315 |
presumptive mesoderm | 3.79e-11 | 315 |
connective tissue | 4.60e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.