FFCP PHASE1:Hg19::chr12:20522789..20522814,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5139|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8778|TSSclassifier=W|UniProt=|association_with_transcript=-244bp_to_ENST00000542675_5end|coexpression_cluster_id=C1012|description=CAGE_peak_2_at_PDE3A_5end|id=chr12:20522789..20522814,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0008947;2.48e-07;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.77e-33!115;UBERON:0000477!6.96e-19!286;UBERON:0000468!2.19e-16!659;UBERON:0000025!1.80e-15!194;UBERON:0000481!2.09e-13!347;UBERON:0002616!4.41e-13!59;UBERON:0001049!7.95e-13!57;UBERON:0005068!7.95e-13!57;UBERON:0006241!7.95e-13!57;UBERON:0007135!7.95e-13!57;UBERON:0000922!9.98e-13!612;UBERON:0004111!1.37e-12!241;UBERON:0000467!1.68e-11!625;UBERON:0000480!2.49e-11!626;UBERON:0002050!2.60e-11!605;UBERON:0005423!2.60e-11!605;UBERON:0003075!2.90e-11!86;UBERON:0007284!2.90e-11!86;UBERON:0002346!3.27e-11!90;UBERON:0000119!3.82e-11!312;UBERON:0000923!6.09e-11!604;UBERON:0005291!6.09e-11!604;UBERON:0006598!6.09e-11!604;UBERON:0002532!6.09e-11!604;UBERON:0001017!1.03e-10!82;UBERON:0005743!2.11e-10!86;UBERON:0000483!2.54e-10!309;UBERON:0000073!1.12e-09!94;UBERON:0001016!1.12e-09!94;UBERON:0000955!8.93e-09!69;UBERON:0006238!8.93e-09!69;UBERON:0001009!9.47e-09!113;UBERON:0000064!1.47e-08!219;UBERON:0004872!2.72e-08!84;UBERON:0003080!3.19e-08!42;UBERON:0002780!5.66e-08!41;UBERON:0001890!5.66e-08!41;UBERON:0006240!5.66e-08!41;UBERON:0004535!1.54e-07!110;UBERON:0001737!1.59e-07!9;UBERON:0002020!3.11e-07!34;UBERON:0003528!3.11e-07!34|ontology_enrichment_uberon_v019=UBERON:0001737;1.20e-09;9!UBERON:0001557;1.20e-09;9!UBERON:0007023;2.24e-08;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-29,114;UBERON:0011216,1.94e-12,223;UBERON:0000025,8.31e-10,192;UBERON:0001737,1.38e-09,9;UBERON:0002050,1.12e-08,564;UBERON:0004111,1.26e-08,240;UBERON:0000923,1.28e-08,560;UBERON:0010316,1.28e-08,560;UBERON:0005291,1.28e-08,560;UBERON:0006598,1.28e-08,560;UBERON:0010317,1.28e-08,560;UBERON:0002532,1.28e-08,560;UBERON:0000922,3.00e-08,592;UBERON:0005423,3.43e-08,581;UBERON:0003075,2.36e-07,82;UBERON:0007284,2.36e-07,82;UBERON:0007100,2.56e-07,27;UBERON:0002346,4.81e-07,86;UBERON:0010314,7.12e-07,132;UBERON:0001557,7.22e-07,19;UBERON:0004921,7.38e-07,118;UBERON:0000119,7.95e-07,309|phase1_expression=2.36181893051724,0.642301571672949,0.986680828671798,0,1.34088328328186,0.872338524100369,2.53299878168311,0,0.261185628199839,0.737201809504527,0,1.74753097704138,2.11013582582763,1.98026164736075,2.98257638155124,0,0.602694528023977,0,0,0.738726348460727,0.612002073732759,0.940364164434263,0.572471974262113,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,1.44575660953827,10.5280961233537,2.02785126545153,0,2.91980922181582,1.22895262313288,0.221729397462564,1.75669571386252,1.96468613246569,0,0,0,0,0,0,0,0,2.78267370313387,0,2.42998351125316,3.95715559346807,1.67799774483962,3.57653454522088,0.417989933073621,0,0,1.00416183829401,0.402829317109147,1.52054421143703,0,0.735326160691737,0,0.803697554556718,0.673588117878509,2.25222960966644,0,0.949265659568129,2.19842092716489,0,0,0,1.49091585508596,1.77282716330412,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,2.48968828319813,2.02066008104532,2.45192854670188,2.11900398702904,1.15235184896,0.468642863667593,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,1.23633464639278,1.82032272387605,1.43723628363248,0,0.125118519871964,0,0,1.83892677479412,2.40380894250555,1.36118619792025,0.358779271377724,0.640672166455702,0.211931901159562,0,0,1.54584324027377,0.930584281657949,0,0,0,0,2.26304479546337,0,0.10075209822764,0.508681776931463,0,0,0,0.365921118388786,0.530119073285941,0.580969714347592,0.621966330092223,1.26160425437814,2.55484151353081,0,2.57296375277154,0,0.464367928031979,0.721879481669586,7.21671480243048,10.1150814046861,9.3994301654558,7.05881425487321,10.0224544282507,9.25355414533277,9.57302287937167,6.27908688401107,7.31019598198142,0,2.80483547606892,0,1.47008711385542,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0,0,0,0,1.15930404975077,0.234817388471643,0,0,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,10.8385912337108,17.8738321046849,29.4405924067896,26.6621913821379,29.5407294217729,0,0,0,1.71072446022705,0,0,0,3.58819469905154,2.61576041299968,3.9602674343313,0,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,8.57867961948885,0,0,0.65147236858747,6.04166312862328,0,0,0,0,0,0,0,4.0736225433569,6.89171615004683,1.42636905040718,1.158250453340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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5139 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-244bp_to_ENST00000542675_5end | |||
|coexpression_cluster_id=C1012 | |||
|description=CAGE_peak_2_at_PDE3A_5end | |||
|id=chr12:20522789..20522814,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.48e-07;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.77e-33!115;UBERON:0000477!6.96e-19!286;UBERON:0000468!2.19e-16!659;UBERON:0000025!1.80e-15!194;UBERON:0000481!2.09e-13!347;UBERON:0002616!4.41e-13!59;UBERON:0001049!7.95e-13!57;UBERON:0005068!7.95e-13!57;UBERON:0006241!7.95e-13!57;UBERON:0007135!7.95e-13!57;UBERON:0000922!9.98e-13!612;UBERON:0004111!1.37e-12!241;UBERON:0000467!1.68e-11!625;UBERON:0000480!2.49e-11!626;UBERON:0002050!2.60e-11!605;UBERON:0005423!2.60e-11!605;UBERON:0003075!2.90e-11!86;UBERON:0007284!2.90e-11!86;UBERON:0002346!3.27e-11!90;UBERON:0000119!3.82e-11!312;UBERON:0000923!6.09e-11!604;UBERON:0005291!6.09e-11!604;UBERON:0006598!6.09e-11!604;UBERON:0002532!6.09e-11!604;UBERON:0001017!1.03e-10!82;UBERON:0005743!2.11e-10!86;UBERON:0000483!2.54e-10!309;UBERON:0000073!1.12e-09!94;UBERON:0001016!1.12e-09!94;UBERON:0000955!8.93e-09!69;UBERON:0006238!8.93e-09!69;UBERON:0001009!9.47e-09!113;UBERON:0000064!1.47e-08!219;UBERON:0004872!2.72e-08!84;UBERON:0003080!3.19e-08!42;UBERON:0002780!5.66e-08!41;UBERON:0001890!5.66e-08!41;UBERON:0006240!5.66e-08!41;UBERON:0004535!1.54e-07!110;UBERON:0001737!1.59e-07!9;UBERON:0002020!3.11e-07!34;UBERON:0003528!3.11e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.20e-09;9!UBERON:0001557;1.20e-09;9!UBERON:0007023;2.24e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-29,114;UBERON:0011216,1.94e-12,223;UBERON:0000025,8.31e-10,192;UBERON:0001737,1.38e-09,9;UBERON:0002050,1.12e-08,564;UBERON:0004111,1.26e-08,240;UBERON:0000923,1.28e-08,560;UBERON:0010316,1.28e-08,560;UBERON:0005291,1.28e-08,560;UBERON:0006598,1.28e-08,560;UBERON:0010317,1.28e-08,560;UBERON:0002532,1.28e-08,560;UBERON:0000922,3.00e-08,592;UBERON:0005423,3.43e-08,581;UBERON:0003075,2.36e-07,82;UBERON:0007284,2.36e-07,82;UBERON:0007100,2.56e-07,27;UBERON:0002346,4.81e-07,86;UBERON:0010314,7.12e-07,132;UBERON:0001557,7.22e-07,19;UBERON:0004921,7.38e-07,118;UBERON:0000119,7.95e-07,309 | |||
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| |||
|short_description=p2@PDE3A | |||
}} |
Revision as of 22:05, 10 September 2013
Short description: | p2@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | -244bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.27e-29 | 114 |
organ system subdivision | 1.94e-12 | 223 |
tube | 8.31e-10 | 192 |
larynx | 1.38e-09 | 9 |
embryonic structure | 1.12e-08 | 564 |
anatomical conduit | 1.26e-08 | 240 |
germ layer | 1.28e-08 | 560 |
germ layer / neural crest | 1.28e-08 | 560 |
embryonic tissue | 1.28e-08 | 560 |
presumptive structure | 1.28e-08 | 560 |
germ layer / neural crest derived structure | 1.28e-08 | 560 |
epiblast (generic) | 1.28e-08 | 560 |
embryo | 3.00e-08 | 592 |
developing anatomical structure | 3.43e-08 | 581 |
neural plate | 2.36e-07 | 82 |
presumptive neural plate | 2.36e-07 | 82 |
primary circulatory organ | 2.56e-07 | 27 |
neurectoderm | 4.81e-07 | 86 |
structure with developmental contribution from neural crest | 7.12e-07 | 132 |
upper respiratory tract | 7.22e-07 | 19 |
subdivision of digestive tract | 7.38e-07 | 118 |
cell layer | 7.95e-07 | 309 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.