FFCP PHASE1:Hg19::chr17:34069128..34069132,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:34069128..34069132,+|id=chr17:34069128..34069132,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000650;8.28e-07;2!CL:1000500;8.28e-07;2!CL:1000618;8.28e-07;2!CL:1001318;8.28e-07;2!CL:0002195;8.28e-07;2!CL:0002571;8.28e-07;2!CL:0002173;8.28e-07;2!CL:0002602;8.28e-07;2|ontology_enrichment_celltype_v019_2=CL:0002602,8.52e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3307;8.28e-07;2|ontology_enrichment_disease_v019_2=DOID:3307,6.42e-07,2|ontology_enrichment_uberon=UBERON:0007023!3.53e-19!115;UBERON:0003056!2.95e-18!61;UBERON:0002346!1.40e-17!90;UBERON:0003075!7.70e-17!86;UBERON:0007284!7.70e-17!86;UBERON:0002616!3.21e-16!59;UBERON:0000073!3.23e-16!94;UBERON:0001016!3.23e-16!94;UBERON:0005743!2.33e-15!86;UBERON:0000955!2.93e-15!69;UBERON:0006238!2.93e-15!69;UBERON:0001869!6.72e-14!32;UBERON:0001893!6.84e-14!34;UBERON:0001017!8.15e-14!82;UBERON:0001049!1.17e-13!57;UBERON:0005068!1.17e-13!57;UBERON:0006241!1.17e-13!57;UBERON:0007135!1.17e-13!57;UBERON:0003080!1.20e-13!42;UBERON:0002791!5.67e-13!33;UBERON:0002780!9.57e-13!41;UBERON:0001890!9.57e-13!41;UBERON:0006240!9.57e-13!41;UBERON:0000033!1.58e-12!123;UBERON:0002020!2.11e-12!34;UBERON:0003528!2.11e-12!34;UBERON:0000924!6.89e-12!173;UBERON:0006601!6.89e-12!173;UBERON:0002619!2.24e-11!22;UBERON:0000153!2.80e-11!129;UBERON:0007811!2.80e-11!129;UBERON:0004121!3.08e-11!169;UBERON:0000956!1.16e-10!25;UBERON:0000203!1.16e-10!25;UBERON:0000481!2.10e-10!347;UBERON:0001950!3.05e-09!20;UBERON:0000475!5.40e-09!365;UBERON:0000483!1.08e-08!309;UBERON:0000119!2.11e-08!312;UBERON:0000477!3.07e-07!286|ontology_enrichment_uberon_v019=UBERON:0001954;6.10e-23;2!UBERON:0003022;6.10e-23;2!UBERON:0002421;6.10e-23;2!UBERON:0002600;6.10e-23;2!UBERON:0001000;8.83e-13;1!UBERON:0005352;8.83e-13;1!UBERON:0002581;2.32e-12;1!UBERON:0002902;2.32e-12;1!UBERON:0001874;2.32e-12;1!UBERON:0009899;2.32e-12;1!UBERON:0000349;9.27e-10;5!UBERON:0002619;6.84e-08;22!UBERON:0002791;2.31e-07;32!UBERON:0001869;2.31e-07;32!UBERON:0003528;4.63e-07;34!UBERON:0002020;4.63e-07;34!UBERON:0000956;5.33e-07;25!UBERON:0000203;5.33e-07;25!UBERON:0003567;8.28e-07;2!UBERON:0003838;8.28e-07;2!UBERON:0003586;8.28e-07;2!UBERON:0006444;8.28e-07;2!UBERON:0005169;8.28e-07;2!UBERON:0001995;8.28e-07;2!UBERON:0002321;8.28e-07;2!UBERON:0004715;8.28e-07;2!UBERON:0005215;8.28e-07;2!UBERON:0002303;8.28e-07;2!UBERON:0002319;8.28e-07;2!UBERON:0001893;9.27e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0001954,3.91e-23,2;UBERON:0003022,3.91e-23,2;UBERON:0002421,3.91e-23,2;UBERON:0002600,3.91e-23,2;UBERON:0001000,8.85e-13,1;UBERON:0005352,8.85e-13,1;UBERON:0001874,2.75e-12,1;UBERON:0002581,3.08e-12,1;UBERON:0002902,3.45e-12,1;UBERON:0009899,3.45e-12,1;UBERON:0000349,7.77e-10,5;UBERON:0002791,3.10e-08,32;UBERON:0001869,3.10e-08,32;UBERON:0002619,7.10e-08,22;UBERON:0003528,9.31e-08,34;UBERON:0002020,9.31e-08,34;UBERON:0001893,9.31e-08,34;UBERON:0000956,5.51e-07,25;UBERON:0000203,5.51e-07,25;UBERON:0006444,8.52e-07,2;UBERON:0001995,8.52e-07,2;UBERON:0004715,8.52e-07,2|phase1_expression=0,0,0,0,0,0,2.53299878168311,0,0.522371256399677,0,0,0,0,0,1.32558950291166,0,0,0,0,0.246242116153576,0.408001382488506,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0,0,0,0.472674085820339,0.886917589850256,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184099797284599,0,0,0,0,0,0,0,0,0.265059536642971,0.464775771478074,0.414644220061482,0,0,0,0.643240938192885,0,0,0,0,0.505754070234305,0,0.220587945464788,0,0,0.404493924480493,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,0,0.231860809950154,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15312891703765,0,0,0,0,0,0,1.00084595560703,1.08524321078289,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0.300946099727719,0,2.0694614258501,0.664225598535437,0,0,0.783204629850962,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0.182091168006717,0.524497659837696,0,0.15403067420883,0.784349769176855,1.46139224653261,0,0,0.170093705276516,0,0,0.270946437543853,1.00337954770971,0,0,0,0,0,0.256450125116389,0.656029291399411,0,0,0,0.082509499920588,0,0,0,0.290012154876366,0.154048617114644,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:34069128..34069132,+ | |||
|id=chr17:34069128..34069132,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000650;8.28e-07;2!CL:1000500;8.28e-07;2!CL:1000618;8.28e-07;2!CL:1001318;8.28e-07;2!CL:0002195;8.28e-07;2!CL:0002571;8.28e-07;2!CL:0002173;8.28e-07;2!CL:0002602;8.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,8.52e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;8.28e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,6.42e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.53e-19!115;UBERON:0003056!2.95e-18!61;UBERON:0002346!1.40e-17!90;UBERON:0003075!7.70e-17!86;UBERON:0007284!7.70e-17!86;UBERON:0002616!3.21e-16!59;UBERON:0000073!3.23e-16!94;UBERON:0001016!3.23e-16!94;UBERON:0005743!2.33e-15!86;UBERON:0000955!2.93e-15!69;UBERON:0006238!2.93e-15!69;UBERON:0001869!6.72e-14!32;UBERON:0001893!6.84e-14!34;UBERON:0001017!8.15e-14!82;UBERON:0001049!1.17e-13!57;UBERON:0005068!1.17e-13!57;UBERON:0006241!1.17e-13!57;UBERON:0007135!1.17e-13!57;UBERON:0003080!1.20e-13!42;UBERON:0002791!5.67e-13!33;UBERON:0002780!9.57e-13!41;UBERON:0001890!9.57e-13!41;UBERON:0006240!9.57e-13!41;UBERON:0000033!1.58e-12!123;UBERON:0002020!2.11e-12!34;UBERON:0003528!2.11e-12!34;UBERON:0000924!6.89e-12!173;UBERON:0006601!6.89e-12!173;UBERON:0002619!2.24e-11!22;UBERON:0000153!2.80e-11!129;UBERON:0007811!2.80e-11!129;UBERON:0004121!3.08e-11!169;UBERON:0000956!1.16e-10!25;UBERON:0000203!1.16e-10!25;UBERON:0000481!2.10e-10!347;UBERON:0001950!3.05e-09!20;UBERON:0000475!5.40e-09!365;UBERON:0000483!1.08e-08!309;UBERON:0000119!2.11e-08!312;UBERON:0000477!3.07e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001954;6.10e-23;2!UBERON:0003022;6.10e-23;2!UBERON:0002421;6.10e-23;2!UBERON:0002600;6.10e-23;2!UBERON:0001000;8.83e-13;1!UBERON:0005352;8.83e-13;1!UBERON:0002581;2.32e-12;1!UBERON:0002902;2.32e-12;1!UBERON:0001874;2.32e-12;1!UBERON:0009899;2.32e-12;1!UBERON:0000349;9.27e-10;5!UBERON:0002619;6.84e-08;22!UBERON:0002791;2.31e-07;32!UBERON:0001869;2.31e-07;32!UBERON:0003528;4.63e-07;34!UBERON:0002020;4.63e-07;34!UBERON:0000956;5.33e-07;25!UBERON:0000203;5.33e-07;25!UBERON:0003567;8.28e-07;2!UBERON:0003838;8.28e-07;2!UBERON:0003586;8.28e-07;2!UBERON:0006444;8.28e-07;2!UBERON:0005169;8.28e-07;2!UBERON:0001995;8.28e-07;2!UBERON:0002321;8.28e-07;2!UBERON:0004715;8.28e-07;2!UBERON:0005215;8.28e-07;2!UBERON:0002303;8.28e-07;2!UBERON:0002319;8.28e-07;2!UBERON:0001893;9.27e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,3.91e-23,2;UBERON:0003022,3.91e-23,2;UBERON:0002421,3.91e-23,2;UBERON:0002600,3.91e-23,2;UBERON:0001000,8.85e-13,1;UBERON:0005352,8.85e-13,1;UBERON:0001874,2.75e-12,1;UBERON:0002581,3.08e-12,1;UBERON:0002902,3.45e-12,1;UBERON:0009899,3.45e-12,1;UBERON:0000349,7.77e-10,5;UBERON:0002791,3.10e-08,32;UBERON:0001869,3.10e-08,32;UBERON:0002619,7.10e-08,22;UBERON:0003528,9.31e-08,34;UBERON:0002020,9.31e-08,34;UBERON:0001893,9.31e-08,34;UBERON:0000956,5.51e-07,25;UBERON:0000203,5.51e-07,25;UBERON:0006444,8.52e-07,2;UBERON:0001995,8.52e-07,2;UBERON:0004715,8.52e-07,2 | |||
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|short_description=p@chr17:34069128..34069132,+ | |||
}} |
Revision as of 13:05, 11 September 2013
Short description: | p@chr17:34069128..34069132, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:34069128..34069132, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 8.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 3.91e-23 | 2 |
lobe parts of cerebral cortex | 3.91e-23 | 2 |
hippocampal formation | 3.91e-23 | 2 |
limbic lobe | 3.91e-23 | 2 |
vas deferens | 8.85e-13 | 1 |
spermatic cord | 8.85e-13 | 1 |
putamen | 2.75e-12 | 1 |
postcentral gyrus | 3.08e-12 | 1 |
occipital pole | 3.45e-12 | 1 |
pole of cerebral hemisphere | 3.45e-12 | 1 |
limbic system | 7.77e-10 | 5 |
regional part of telencephalon | 3.10e-08 | 32 |
cerebral hemisphere | 3.10e-08 | 32 |
regional part of cerebral cortex | 7.10e-08 | 22 |
brain grey matter | 9.31e-08 | 34 |
gray matter | 9.31e-08 | 34 |
telencephalon | 9.31e-08 | 34 |
cerebral cortex | 5.51e-07 | 25 |
pallium | 5.51e-07 | 25 |
annulus fibrosus | 8.52e-07 | 2 |
fibrocartilage | 8.52e-07 | 2 |
annulus fibrosus disci intervertebralis | 8.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
teratoma | 6.42e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.