FFCP PHASE1:Hg19::chr19:52299474..52299504,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C847|description=CAGE_peak_at_chr19:52299474..52299504,-|id=chr19:52299474..52299504,-|ontology_enrichment_celltype=CL:0000839!5.87e-76!70;CL:0000557!2.27e-75!71;CL:0002009!2.18e-71!65;CL:0000763!4.82e-69!112;CL:0000049!4.82e-69!112;CL:0002194!1.19e-67!63;CL:0000576!1.19e-67!63;CL:0000040!1.19e-67!63;CL:0000559!1.19e-67!63;CL:0000766!6.16e-66!76;CL:0002057!5.03e-58!42;CL:0000860!2.75e-53!45;CL:0000037!9.23e-45!172;CL:0000566!9.23e-45!172;CL:0002032!6.33e-43!165;CL:0000837!6.33e-43!165;CL:0000738!2.20e-42!140;CL:0002031!8.61e-42!124;CL:0000988!4.25e-41!182;CL:0002087!1.42e-35!119;CL:0000990!5.44e-16!8;CL:0000134!5.40e-13!358;CL:0000451!1.08e-12!10;CL:0002320!2.36e-12!365;CL:0000840!5.82e-12!5;CL:0001029!5.82e-12!5;CL:0000219!4.03e-10!390;CL:0000453!2.22e-09!5;CL:0002393!2.61e-09!9;CL:0002397!2.61e-09!9;CL:0000048!5.44e-08!430;CL:0000723!1.28e-07!436;CL:0000034!1.32e-07!444;CL:0000235!5.15e-07!10|ontology_enrichment_celltype_v019=CL:0000473;4.27e-78;39!CL:0000234;4.27e-78;39!CL:0000860;7.76e-73;33!CL:0002057;7.76e-73;33!CL:0000576;5.88e-53;48!CL:0000766;1.43e-40;69!CL:0000763;1.58e-24;100!CL:0000235;2.09e-23;6!CL:0000840;2.75e-16;5!CL:0000738;5.73e-16;136!CL:0002087;8.58e-13;104!CL:0002619;1.94e-11;3!CL:0000990;9.33e-11;8!CL:0000988;1.04e-09;177!CL:0001014;3.36e-09;2!CL:0001016;3.36e-09;2!CL:0000451;9.68e-09;10!CL:0000097;1.49e-07;5|ontology_enrichment_celltype_v019_2=CL:0000557,1.55e-116,67;CL:0002009,7.61e-112,61;CL:0000839,1.39e-107,66;CL:0002194,1.25e-104,59;CL:0000576,1.25e-104,59;CL:0000040,1.25e-104,59;CL:0000559,1.25e-104,59;CL:0000766,6.04e-98,72;CL:0000473,1.27e-96,48;CL:0000234,1.27e-96,48;CL:0000763,3.64e-79,108;CL:0000049,3.64e-79,108;CL:0000860,1.48e-75,42;CL:0002057,1.48e-75,42;CL:0002031,3.58e-61,120;CL:0000738,2.21e-55,136;CL:0002087,3.62e-52,115;CL:0002032,5.70e-50,161;CL:0000837,5.70e-50,161;CL:0000037,1.14e-49,168;CL:0000988,1.21e-46,177;CL:0000235,1.72e-23,6;CL:0000134,3.06e-18,354;CL:0002320,1.10e-17,361;CL:0000840,2.24e-16,5;CL:0001029,2.24e-16,5;CL:0000219,9.95e-16,386;CL:0000034,1.99e-13,441;CL:0000048,2.47e-13,427;CL:0000723,5.29e-13,433;CL:0002619,1.37e-11,3;CL:0000990,8.17e-11,8;CL:0001014,3.43e-09,2;CL:0001016,3.43e-09,2;CL:0000451,8.70e-09,10;CL:0000097,1.51e-07,5;CL:0002028,1.51e-07,5|ontology_enrichment_development_v019=CL:0002057;4.29e-56;42!CL:0000049;8.71e-24;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!6.46e-65!80;UBERON:0001474!3.72e-59!86;UBERON:0002390!1.17e-58!102;UBERON:0003061!1.17e-58!102;UBERON:0002193!1.51e-53!112;UBERON:0004765!9.51e-48!101;UBERON:0001434!9.51e-48!101;UBERON:0002405!4.96e-46!115;UBERON:0002204!5.03e-23!167;UBERON:0003081!1.47e-20!216;UBERON:0002384!5.02e-12!375;UBERON:0000926!6.28e-07!448;UBERON:0004120!6.28e-07!448;UBERON:0006603!6.28e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.05e-102,76;UBERON:0001474,1.06e-93,82;UBERON:0004765,1.34e-84,90;UBERON:0002405,1.38e-81,93;UBERON:0002390,1.83e-80,98;UBERON:0003061,1.83e-80,98;UBERON:0001434,3.02e-75,100;UBERON:0002193,3.59e-72,108;UBERON:0002204,2.86e-41,167;UBERON:0003081,6.89e-34,203;UBERON:0000926,2.06e-19,315;UBERON:0004120,2.06e-19,315;UBERON:0006603,2.06e-19,315;UBERON:0002384,6.29e-17,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,3.32397245119126,0.802177789880567,0.868043482863407,1.56740831967947,1.94336199611388,1.80302897343931,10.1778767145695,9.06902264853143,8.00527401919793,6.50801303335917,4.93401465626191,2.16794459626573,2.3015391385772,3.58624989140741,1.6553756092201,1.03423704220986,1.93645405075148,0,11.4827827120989,7.36846605156184,6.74170453335254,4.59125838556354,6.73950956859797,2.55734850319616,2.63881040149373,3.59034583718937,1.70489900213078,2.32167390902867,1.13477044938228,0.622822248995575,2.76373531782418,1.5644487552606,1.95469960234605,1.81619850790011,0.736555271975129,1.89877432464531,2.5350634357433,1.27562579979026,0.838634582033504,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,2.92092654289215,4.00498395788315,1.86141144726411,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,2.80805118167085,1.18904929830983,0,0,0,0,0,0,0,0.088048434013226,3.93923419527467,5.90891809009542,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C847 | |||
|description=CAGE_peak_at_chr19:52299474..52299504,- | |||
|id=chr19:52299474..52299504,- | |||
|ontology_enrichment_celltype=CL:0000839!5.87e-76!70;CL:0000557!2.27e-75!71;CL:0002009!2.18e-71!65;CL:0000763!4.82e-69!112;CL:0000049!4.82e-69!112;CL:0002194!1.19e-67!63;CL:0000576!1.19e-67!63;CL:0000040!1.19e-67!63;CL:0000559!1.19e-67!63;CL:0000766!6.16e-66!76;CL:0002057!5.03e-58!42;CL:0000860!2.75e-53!45;CL:0000037!9.23e-45!172;CL:0000566!9.23e-45!172;CL:0002032!6.33e-43!165;CL:0000837!6.33e-43!165;CL:0000738!2.20e-42!140;CL:0002031!8.61e-42!124;CL:0000988!4.25e-41!182;CL:0002087!1.42e-35!119;CL:0000990!5.44e-16!8;CL:0000134!5.40e-13!358;CL:0000451!1.08e-12!10;CL:0002320!2.36e-12!365;CL:0000840!5.82e-12!5;CL:0001029!5.82e-12!5;CL:0000219!4.03e-10!390;CL:0000453!2.22e-09!5;CL:0002393!2.61e-09!9;CL:0002397!2.61e-09!9;CL:0000048!5.44e-08!430;CL:0000723!1.28e-07!436;CL:0000034!1.32e-07!444;CL:0000235!5.15e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.27e-78;39!CL:0000234;4.27e-78;39!CL:0000860;7.76e-73;33!CL:0002057;7.76e-73;33!CL:0000576;5.88e-53;48!CL:0000766;1.43e-40;69!CL:0000763;1.58e-24;100!CL:0000235;2.09e-23;6!CL:0000840;2.75e-16;5!CL:0000738;5.73e-16;136!CL:0002087;8.58e-13;104!CL:0002619;1.94e-11;3!CL:0000990;9.33e-11;8!CL:0000988;1.04e-09;177!CL:0001014;3.36e-09;2!CL:0001016;3.36e-09;2!CL:0000451;9.68e-09;10!CL:0000097;1.49e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.55e-116,67;CL:0002009,7.61e-112,61;CL:0000839,1.39e-107,66;CL:0002194,1.25e-104,59;CL:0000576,1.25e-104,59;CL:0000040,1.25e-104,59;CL:0000559,1.25e-104,59;CL:0000766,6.04e-98,72;CL:0000473,1.27e-96,48;CL:0000234,1.27e-96,48;CL:0000763,3.64e-79,108;CL:0000049,3.64e-79,108;CL:0000860,1.48e-75,42;CL:0002057,1.48e-75,42;CL:0002031,3.58e-61,120;CL:0000738,2.21e-55,136;CL:0002087,3.62e-52,115;CL:0002032,5.70e-50,161;CL:0000837,5.70e-50,161;CL:0000037,1.14e-49,168;CL:0000988,1.21e-46,177;CL:0000235,1.72e-23,6;CL:0000134,3.06e-18,354;CL:0002320,1.10e-17,361;CL:0000840,2.24e-16,5;CL:0001029,2.24e-16,5;CL:0000219,9.95e-16,386;CL:0000034,1.99e-13,441;CL:0000048,2.47e-13,427;CL:0000723,5.29e-13,433;CL:0002619,1.37e-11,3;CL:0000990,8.17e-11,8;CL:0001014,3.43e-09,2;CL:0001016,3.43e-09,2;CL:0000451,8.70e-09,10;CL:0000097,1.51e-07,5;CL:0002028,1.51e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;4.29e-56;42!CL:0000049;8.71e-24;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.46e-65!80;UBERON:0001474!3.72e-59!86;UBERON:0002390!1.17e-58!102;UBERON:0003061!1.17e-58!102;UBERON:0002193!1.51e-53!112;UBERON:0004765!9.51e-48!101;UBERON:0001434!9.51e-48!101;UBERON:0002405!4.96e-46!115;UBERON:0002204!5.03e-23!167;UBERON:0003081!1.47e-20!216;UBERON:0002384!5.02e-12!375;UBERON:0000926!6.28e-07!448;UBERON:0004120!6.28e-07!448;UBERON:0006603!6.28e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.05e-102,76;UBERON:0001474,1.06e-93,82;UBERON:0004765,1.34e-84,90;UBERON:0002405,1.38e-81,93;UBERON:0002390,1.83e-80,98;UBERON:0003061,1.83e-80,98;UBERON:0001434,3.02e-75,100;UBERON:0002193,3.59e-72,108;UBERON:0002204,2.86e-41,167;UBERON:0003081,6.89e-34,203;UBERON:0000926,2.06e-19,315;UBERON:0004120,2.06e-19,315;UBERON:0006603,2.06e-19,315;UBERON:0002384,6.29e-17,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,3.32397245119126,0.802177789880567,0.868043482863407,1.56740831967947,1.94336199611388,1.80302897343931,10.1778767145695,9.06902264853143,8.00527401919793,6.50801303335917,4.93401465626191,2.16794459626573,2.3015391385772,3.58624989140741,1.6553756092201,1.03423704220986,1.93645405075148,0,11.4827827120989,7.36846605156184,6.74170453335254,4.59125838556354,6.73950956859797,2.55734850319616,2.63881040149373,3.59034583718937,1.70489900213078,2.32167390902867,1.13477044938228,0.622822248995575,2.76373531782418,1.5644487552606,1.95469960234605,1.81619850790011,0.736555271975129,1.89877432464531,2.5350634357433,1.27562579979026,0.838634582033504,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,2.92092654289215,4.00498395788315,1.86141144726411,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,2.80805118167085,1.18904929830983,0,0,0,0,0,0,0,0.088048434013226,3.93923419527467,5.90891809009542,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.162378064119,12.054170194371,10.5416969741516,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,1.2942852049117,0.853820462427555,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,4.22961015263549,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0.166211681900156,0.902382642468723,0.980312671588698,0.503464760927528,0,1.27149263184303,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,2.84339608328196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.29926896344201,4.6428117273477,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,3.03742326772554,0,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.156986185701028,0,0,0.913158720509496,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:52299474..52299504,- | |||
}} |
Revision as of 22:08, 11 September 2013
Short description: | p@chr19:52299474..52299504, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:52299474..52299504, - |
Coexpression cluster: | C847_Monocytederived_CD14_Macrophage_Dendritic_immature_adipose_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.05e-102 | 76 |
bone element | 1.06e-93 | 82 |
skeletal element | 1.34e-84 | 90 |
immune system | 1.38e-81 | 93 |
hematopoietic system | 1.83e-80 | 98 |
blood island | 1.83e-80 | 98 |
skeletal system | 3.02e-75 | 100 |
hemolymphoid system | 3.59e-72 | 108 |
musculoskeletal system | 2.86e-41 | 167 |
lateral plate mesoderm | 6.89e-34 | 203 |
mesoderm | 2.06e-19 | 315 |
mesoderm-derived structure | 2.06e-19 | 315 |
presumptive mesoderm | 2.06e-19 | 315 |
connective tissue | 6.29e-17 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.