FFCP PHASE1:Mm9::chr11:83037941..83037993,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1288|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:83037941..83037993,+|id=chr11:83037941..83037993,+|ontology_enrichment_celltype=CL:0000988!8.27e-15!32;CL:0002032!8.27e-15!32;CL:0000037!8.27e-15!32;CL:0000566!8.27e-15!32;CL:0000837!8.27e-15!32;CL:0002031!1.53e-11!25;CL:0000049!7.47e-10!19;CL:0002320!2.72e-08!46;CL:0000134!2.72e-08!46;CL:0000763!6.21e-08!16;CL:0000838!7.40e-07!12|ontology_enrichment_celltype_v019_2=CL:0000988,3.03e-15,32;CL:0002032,3.03e-15,32;CL:0000037,3.03e-15,32;CL:0000837,3.03e-15,32;CL:0002031,7.20e-12,25;CL:0000049,3.99e-10,19;CL:0002320,2.35e-09,46;CL:0000134,2.35e-09,46;CL:0000763,3.83e-08,16;CL:0000838,4.94e-07,12;CL:0000738,6.98e-07,17;CL:0002087,6.98e-07,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!1.26e-19!70;UBERON:0002193!3.70e-18!48;UBERON:0002390!6.29e-17!45;UBERON:0003061!6.29e-17!45;UBERON:0005057!1.50e-11!51;UBERON:0004177!3.33e-10!29;UBERON:0000926!4.28e-10!193;UBERON:0004120!4.28e-10!193;UBERON:0006603!4.28e-10!193;UBERON:0003081!1.15e-09!88;UBERON:0002384!2.72e-08!46;UBERON:0001041!4.81e-08!92;UBERON:0000077!5.48e-08!97;UBERON:0002371!1.21e-07!16;UBERON:0001474!1.57e-07!22;UBERON:0004765!1.57e-07!22;UBERON:0001434!1.57e-07!22;UBERON:0003408!3.90e-07!24;UBERON:0003104!3.99e-07!131;UBERON:0009142!3.99e-07!131;UBERON:0002370!4.31e-07!23;UBERON:0000974!4.31e-07!23;UBERON:0004807!4.31e-07!23;UBERON:0005058!4.31e-07!23;UBERON:0003351!4.31e-07!23;UBERON:0009113!4.31e-07!23;UBERON:0003295!4.31e-07!23;UBERON:0009722!4.31e-07!23;UBERON:0005562!4.31e-07!23;UBERON:0007690!4.31e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.56e-19,48;UBERON:0002405,3.56e-19,48;UBERON:0002390,6.70e-18,45;UBERON:0003061,6.70e-18,45;UBERON:0004177,6.42e-11,29;UBERON:0005057,6.42e-11,29;UBERON:0000077,4.61e-10,35;UBERON:0003081,1.02e-09,87;UBERON:0001041,2.09e-09,80;UBERON:0002384,2.35e-09,46;UBERON:0000926,1.62e-08,120;UBERON:0004120,1.62e-08,120;UBERON:0006603,1.62e-08,120;UBERON:0002371,7.61e-08,16;UBERON:0003408,1.06e-07,24;UBERON:0002370,1.16e-07,23;UBERON:0000974,1.16e-07,23;UBERON:0004807,1.16e-07,23;UBERON:0005058,1.16e-07,23;UBERON:0003351,1.16e-07,23;UBERON:0009113,1.16e-07,23;UBERON:0003295,1.16e-07,23;UBERON:0009722,1.16e-07,23;UBERON:0005562,1.16e-07,23;UBERON:0007690,1.16e-07,23;UBERON:0001474,1.34e-07,22;UBERON:0004765,1.34e-07,22;UBERON:0001434,1.34e-07,22;UBERON:0006562,2.90e-07,24;UBERON:0001557,2.90e-07,24;UBERON:0001042,2.90e-07,24;UBERON:0008814,2.90e-07,24;UBERON:0009145,2.90e-07,24|phase1_expression=0.80074423552397,0,0,0,0,0,0,49.5833562015653,51.3878835853584,37.450324211519,170.875532289054,173.265129337871,48.7922080303936,44.1473032215937,85.6092087866253,155.905955890166,151.804927553808,61.3573911621772,61.2901518217652,77.2389166272415,3.74190476664707,118.255522880254,172.914260409975,17.2791816616879,22.4821095445827,0,0,0,0.950117097281869,2.01624103807945,0.665191531965914,38.1018404075779,27.0628506537211,15.8481681015439,0,0.166234645358492,0.204169356262369,53.9905803650611,81.2588758304752,78.0050378520959,47.0585190424811,44.397956522299,61.6598148349565,0,0,0,0,0,0,0,0,0,52.0126078778983,27.5637613964311,22.8543783416875,1.02903774414379,1.71920063963254,2.06268836910977,0,0,0,0,0,14.3983954765024,9.88866362566974,18.4724829885986,2.09720077362883,3.07374644257244,0.207379224616955,0.135005938331691,0,0.285650984403804,0.220868540951614,0.122490799214954,0.0958454710182364,0,0,0.127687338085188,0,0,0,0,0,0,0,0.589257170947335,1.42371680799103,0.559198337475902,2.42323818666189,0.0755715601067855,17.6817338108023,7.74381489283248,0,0,1.94932925234301,0,14.1848864333069,0,0,0,0,0,0,0,0,0.253359865475099,0,7.30776830201984,72.5026074212081,4.15637989381509,5.03107447621794,6.69824052286711,6.91846491768175,4.22023393547343,5.05631440683531,2.38766523526383,2.47194967734374,4.19338135067744,56.615075324792,22.3238252927425,50.5727077274301,62.0640324013084,0,0.585561594023094,0.209446706813455,6.13096932500619,117.898082513826,186.56974933895,134.186159789156,0.149790639404823,0,0,0,0.255715457330331,0.41557608911912,0.162241263067758,2.03678727700633,42.2983700074316,0.505445516867349,1.26265113531884,0.260240885925407,0.229902104433473,2.16074555766419,3.31550599238573,0.476255494059295,0.768682321709099,0.281105173679186,0.258703370739016,0,0,0.879755620819744,1.09597866213787,1.39023624612799,4.87553033131033,2.67516777330327,2.18937693500343,172.744444079056,178.342099630498,99.4572247884574,0,0.469052119962192,0.36012412292203,1.18372367792605,3.54175617145327,2.46827380619805,2.32533944750408,1.3413670069981,1.5179494507732,0.16455984991348,2.29834449710733,3.40489000092594,8.18719929581861,10.7579556492615,4.83143107537338,0.210289948564127,0.102904612379284,2.97376904685418,2.3800550999719,1.06644125267617,4.41249676534833,3.22168653305233,1.61346819698674,1.55664630691409,1.14135375667535,0.474529061544512,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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1288 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:83037941..83037993,+ | |||
|id=chr11:83037941..83037993,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.27e-15!32;CL:0002032!8.27e-15!32;CL:0000037!8.27e-15!32;CL:0000566!8.27e-15!32;CL:0000837!8.27e-15!32;CL:0002031!1.53e-11!25;CL:0000049!7.47e-10!19;CL:0002320!2.72e-08!46;CL:0000134!2.72e-08!46;CL:0000763!6.21e-08!16;CL:0000838!7.40e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,3.03e-15,32;CL:0002032,3.03e-15,32;CL:0000037,3.03e-15,32;CL:0000837,3.03e-15,32;CL:0002031,7.20e-12,25;CL:0000049,3.99e-10,19;CL:0002320,2.35e-09,46;CL:0000134,2.35e-09,46;CL:0000763,3.83e-08,16;CL:0000838,4.94e-07,12;CL:0000738,6.98e-07,17;CL:0002087,6.98e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.26e-19!70;UBERON:0002193!3.70e-18!48;UBERON:0002390!6.29e-17!45;UBERON:0003061!6.29e-17!45;UBERON:0005057!1.50e-11!51;UBERON:0004177!3.33e-10!29;UBERON:0000926!4.28e-10!193;UBERON:0004120!4.28e-10!193;UBERON:0006603!4.28e-10!193;UBERON:0003081!1.15e-09!88;UBERON:0002384!2.72e-08!46;UBERON:0001041!4.81e-08!92;UBERON:0000077!5.48e-08!97;UBERON:0002371!1.21e-07!16;UBERON:0001474!1.57e-07!22;UBERON:0004765!1.57e-07!22;UBERON:0001434!1.57e-07!22;UBERON:0003408!3.90e-07!24;UBERON:0003104!3.99e-07!131;UBERON:0009142!3.99e-07!131;UBERON:0002370!4.31e-07!23;UBERON:0000974!4.31e-07!23;UBERON:0004807!4.31e-07!23;UBERON:0005058!4.31e-07!23;UBERON:0003351!4.31e-07!23;UBERON:0009113!4.31e-07!23;UBERON:0003295!4.31e-07!23;UBERON:0009722!4.31e-07!23;UBERON:0005562!4.31e-07!23;UBERON:0007690!4.31e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.56e-19,48;UBERON:0002405,3.56e-19,48;UBERON:0002390,6.70e-18,45;UBERON:0003061,6.70e-18,45;UBERON:0004177,6.42e-11,29;UBERON:0005057,6.42e-11,29;UBERON:0000077,4.61e-10,35;UBERON:0003081,1.02e-09,87;UBERON:0001041,2.09e-09,80;UBERON:0002384,2.35e-09,46;UBERON:0000926,1.62e-08,120;UBERON:0004120,1.62e-08,120;UBERON:0006603,1.62e-08,120;UBERON:0002371,7.61e-08,16;UBERON:0003408,1.06e-07,24;UBERON:0002370,1.16e-07,23;UBERON:0000974,1.16e-07,23;UBERON:0004807,1.16e-07,23;UBERON:0005058,1.16e-07,23;UBERON:0003351,1.16e-07,23;UBERON:0009113,1.16e-07,23;UBERON:0003295,1.16e-07,23;UBERON:0009722,1.16e-07,23;UBERON:0005562,1.16e-07,23;UBERON:0007690,1.16e-07,23;UBERON:0001474,1.34e-07,22;UBERON:0004765,1.34e-07,22;UBERON:0001434,1.34e-07,22;UBERON:0006562,2.90e-07,24;UBERON:0001557,2.90e-07,24;UBERON:0001042,2.90e-07,24;UBERON:0008814,2.90e-07,24;UBERON:0009145,2.90e-07,24 | |||
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| |||
|short_description=p@chr11:83037941..83037993,+ | |||
}} |
Revision as of 21:10, 12 September 2013
Short description: | p@chr11:83037941..83037993, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:83037941..83037993, + |
Coexpression cluster: | MCL_coexpression_mm9:1288 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 3.03e-15 | 32 |
hematopoietic oligopotent progenitor cell | 3.03e-15 | 32 |
hematopoietic stem cell | 3.03e-15 | 32 |
hematopoietic multipotent progenitor cell | 3.03e-15 | 32 |
hematopoietic lineage restricted progenitor cell | 7.20e-12 | 25 |
common myeloid progenitor | 3.99e-10 | 19 |
connective tissue cell | 2.35e-09 | 46 |
mesenchymal cell | 2.35e-09 | 46 |
myeloid cell | 3.83e-08 | 16 |
lymphoid lineage restricted progenitor cell | 4.94e-07 | 12 |
leukocyte | 6.98e-07 | 17 |
nongranular leukocyte | 6.98e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.56e-19 | 48 |
immune system | 3.56e-19 | 48 |
hematopoietic system | 6.70e-18 | 45 |
blood island | 6.70e-18 | 45 |
hemopoietic organ | 6.42e-11 | 29 |
immune organ | 6.42e-11 | 29 |
mixed endoderm/mesoderm-derived structure | 4.61e-10 | 35 |
lateral plate mesoderm | 1.02e-09 | 87 |
foregut | 2.09e-09 | 80 |
connective tissue | 2.35e-09 | 46 |
mesoderm | 1.62e-08 | 120 |
mesoderm-derived structure | 1.62e-08 | 120 |
presumptive mesoderm | 1.62e-08 | 120 |
bone marrow | 7.61e-08 | 16 |
gland of gut | 1.06e-07 | 24 |
thymus | 1.16e-07 | 23 |
neck | 1.16e-07 | 23 |
respiratory system epithelium | 1.16e-07 | 23 |
hemolymphoid system gland | 1.16e-07 | 23 |
pharyngeal epithelium | 1.16e-07 | 23 |
thymic region | 1.16e-07 | 23 |
pharyngeal gland | 1.16e-07 | 23 |
entire pharyngeal arch endoderm | 1.16e-07 | 23 |
thymus primordium | 1.16e-07 | 23 |
early pharyngeal endoderm | 1.16e-07 | 23 |
bone element | 1.34e-07 | 22 |
skeletal element | 1.34e-07 | 22 |
skeletal system | 1.34e-07 | 22 |
pharynx | 2.90e-07 | 24 |
upper respiratory tract | 2.90e-07 | 24 |
chordate pharynx | 2.90e-07 | 24 |
pharyngeal arch system | 2.90e-07 | 24 |
pharyngeal region of foregut | 2.90e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.