FFCP PHASE1:Mm9::chr1:108656270..108656302,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70750|HGNC=|MCL_coexpression_id=3220|UniProt=Q6GV12,Q8CII3|association_with_transcript=16bp_to_ENSMUST00000010049,NM_027534,uc007cgy.2_5end|description=CAGE_peak_2_at_Kdsr_5end|id=chr1:108656270..108656302,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.26e-13!63;UBERON:0004121!1.53e-11!102;UBERON:0000924!1.53e-11!102;UBERON:0006601!1.53e-11!102;UBERON:0000475!1.35e-10!200;UBERON:0000153!2.71e-10!94;UBERON:0000955!3.05e-10!50;UBERON:0006238!3.05e-10!50;UBERON:0007811!5.18e-10!86;UBERON:0002616!5.88e-10!49;UBERON:0003056!3.19e-09!49;UBERON:0002346!9.40e-09!71;UBERON:0003075!9.40e-09!71;UBERON:0007284!9.40e-09!71;UBERON:0001049!3.74e-08!52;UBERON:0005068!3.74e-08!52;UBERON:0006241!3.74e-08!52;UBERON:0007135!3.74e-08!52;UBERON:0003080!9.66e-08!40;UBERON:0002780!1.27e-07!39;UBERON:0001890!1.27e-07!39;UBERON:0006240!1.27e-07!39;UBERON:0007023!1.41e-07!51;UBERON:0002791!1.47e-07!29;UBERON:0003528!1.47e-07!29;UBERON:0001893!1.47e-07!29;UBERON:0000073!2.06e-07!75;UBERON:0001016!2.06e-07!75;UBERON:0000956!5.15e-07!21;UBERON:0001869!5.15e-07!21;UBERON:0000203!5.15e-07!21;UBERON:0001017!5.99e-07!73;UBERON:0005743!5.99e-07!73;UBERON:0002619!9.94e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.05e-11,95;UBERON:0000924,2.05e-11,95;UBERON:0006601,2.05e-11,95;UBERON:0010371,3.01e-11,73;UBERON:0000955,7.51e-10,47;UBERON:0006238,7.51e-10,47;UBERON:0002616,1.44e-09,46;UBERON:0003056,3.19e-09,49;UBERON:0002346,9.30e-09,64;UBERON:0003075,9.30e-09,64;UBERON:0007284,9.30e-09,64;UBERON:0000073,3.08e-08,54;UBERON:0001049,3.74e-08,52;UBERON:0005068,3.74e-08,52;UBERON:0006241,3.74e-08,52;UBERON:0007135,3.74e-08,52;UBERON:0003080,9.66e-08,40;UBERON:0002780,1.27e-07,39;UBERON:0001890,1.27e-07,39;UBERON:0006240,1.27e-07,39;UBERON:0007023,1.41e-07,51;UBERON:0003528,1.47e-07,29;UBERON:0002791,1.47e-07,29;UBERON:0001893,1.47e-07,29;UBERON:0001016,2.06e-07,75;UBERON:0000956,5.15e-07,21;UBERON:0001869,5.15e-07,21;UBERON:0000203,5.15e-07,21;UBERON:0001017,5.99e-07,73;UBERON:0002619,9.94e-07,17|phase1_expression=20.6592012765184,3.14077866875425,2.27499619694768,5.74682001482977,2.00358291978539,4.70061961353291,4.90586545250604,12.0084690800666,5.91312633037,9.59664557920173,8.90333434772626,7.49858294556162,8.56003649656029,10.1407666806037,4.66353666541928,3.23960427823721,4.19737126876888,7.72882305127682,8.77532375076728,9.33657233955666,8.41928572495591,7.64540324246817,6.52999472847338,11.9994317095055,11.2410547722913,1.72269589234506,5.1691439539089,6.03319451520489,7.03086651988583,8.31699428207772,7.31710685162506,5.08024538767705,3.07532393792285,0,10.6875099307972,7.97926297720763,10.4126371693808,9.62622750694888,2.3440060335714,8.89990364755457,2.94115744015507,4.09827290975067,5.82612423637384,25.6829508670178,25.9524943921957,17.0698479510364,8.60630478782843,11.3373081317832,18.8930117151646,19.0541301092798,11.6188729949051,2.87505128729943,7.21465206048266,7.97898356212479,13.779845764841,24.6969058594509,12.3209379173665,19.5955395065428,7.28339259094552,8.99284664762456,7.60597684207415,15.2480039431109,8.00365316500025,4.04954872776629,5.93319817540185,4.9733608046227,6.2916023208865,4.61061966385865,9.64313394468842,10.6654691282036,9.04397333810943,7.42692559449889,10.3808214247258,7.83941114975706,7.28425579738596,7.35375029288017,7.70811166995721,12.5133591323484,13.5173749265494,8.30883612700221,9.05727671663856,6.77187381723788,10.8881369610539,12.380777420697,14.0574387954665,4.71405736757868,6.12198227436143,5.40558392893372,10.5259408733126,15.2654551415707,8.11620568364698,8.60423876981386,10.1995700056163,5.93673510801599,16.8941868536394,15.6809410484067,7.02222100658759,9.03280709663706,7.79358013808606,6.36011234118612,22.5349471642689,2.56652954828636,2.54805239706646,0,14.5048997477513,14.4415123320806,14.1546844604139,9.47726201668198,11.6522047641227,19.445920217492,5.03107447621794,7.61163695780353,5.30415643688935,8.13902258984162,13.6402900277418,16.0853236901985,12.8541383221874,12.2909453381925,3.5384422077995,6.95597454773859,4.85851340612866,3.87900202508178,20.5030937339934,19.0307518057506,18.850203613211,10.7291963187608,7.42853771936706,4.19931911695385,5.71816021828791,10.6351353977424,13.7250180845588,11.5602003943835,13.7321212951898,11.7629110371952,12.0517065844545,13.3037835715561,10.3876151127323,10.4501855312478,21.9868799837297,61.8699056306234,9.36867189331467,7.12696523743766,8.10279584124071,9.19299388797862,12.3146063463903,14.3487366719032,12.1812241927647,33.372734825333,6.03590380211958,8.50977360755187,8.62160508403349,6.57587197282724,15.2925987074079,11.1440693287093,10.7006710932131,6.56813080501028,9.83098462238529,7.97778512055617,8.80906848126337,4.76389276831654,4.45599513964083,4.68161359798639,5.68187365404505,5.1158700254325,4.31947916084659,3.72054311600653,5.09719462659276,4.78737903705395,5.75959474697182,5.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| ||
|EntrezGene=70750 | |||
|HGNC= | |||
|MCL_coexpression_id=3220 | |||
|UniProt=Q6GV12,Q8CII3 | |||
|association_with_transcript=16bp_to_ENSMUST00000010049,NM_027534,uc007cgy.2_5end | |||
|description=CAGE_peak_2_at_Kdsr_5end | |||
|id=chr1:108656270..108656302,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.26e-13!63;UBERON:0004121!1.53e-11!102;UBERON:0000924!1.53e-11!102;UBERON:0006601!1.53e-11!102;UBERON:0000475!1.35e-10!200;UBERON:0000153!2.71e-10!94;UBERON:0000955!3.05e-10!50;UBERON:0006238!3.05e-10!50;UBERON:0007811!5.18e-10!86;UBERON:0002616!5.88e-10!49;UBERON:0003056!3.19e-09!49;UBERON:0002346!9.40e-09!71;UBERON:0003075!9.40e-09!71;UBERON:0007284!9.40e-09!71;UBERON:0001049!3.74e-08!52;UBERON:0005068!3.74e-08!52;UBERON:0006241!3.74e-08!52;UBERON:0007135!3.74e-08!52;UBERON:0003080!9.66e-08!40;UBERON:0002780!1.27e-07!39;UBERON:0001890!1.27e-07!39;UBERON:0006240!1.27e-07!39;UBERON:0007023!1.41e-07!51;UBERON:0002791!1.47e-07!29;UBERON:0003528!1.47e-07!29;UBERON:0001893!1.47e-07!29;UBERON:0000073!2.06e-07!75;UBERON:0001016!2.06e-07!75;UBERON:0000956!5.15e-07!21;UBERON:0001869!5.15e-07!21;UBERON:0000203!5.15e-07!21;UBERON:0001017!5.99e-07!73;UBERON:0005743!5.99e-07!73;UBERON:0002619!9.94e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.05e-11,95;UBERON:0000924,2.05e-11,95;UBERON:0006601,2.05e-11,95;UBERON:0010371,3.01e-11,73;UBERON:0000955,7.51e-10,47;UBERON:0006238,7.51e-10,47;UBERON:0002616,1.44e-09,46;UBERON:0003056,3.19e-09,49;UBERON:0002346,9.30e-09,64;UBERON:0003075,9.30e-09,64;UBERON:0007284,9.30e-09,64;UBERON:0000073,3.08e-08,54;UBERON:0001049,3.74e-08,52;UBERON:0005068,3.74e-08,52;UBERON:0006241,3.74e-08,52;UBERON:0007135,3.74e-08,52;UBERON:0003080,9.66e-08,40;UBERON:0002780,1.27e-07,39;UBERON:0001890,1.27e-07,39;UBERON:0006240,1.27e-07,39;UBERON:0007023,1.41e-07,51;UBERON:0003528,1.47e-07,29;UBERON:0002791,1.47e-07,29;UBERON:0001893,1.47e-07,29;UBERON:0001016,2.06e-07,75;UBERON:0000956,5.15e-07,21;UBERON:0001869,5.15e-07,21;UBERON:0000203,5.15e-07,21;UBERON:0001017,5.99e-07,73;UBERON:0002619,9.94e-07,17 | |||
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| |||
|short_description=p2@Kdsr | |||
}} |
Revision as of 18:33, 13 September 2013
Short description: | p2@Kdsr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Kdsr_5end |
Coexpression cluster: | MCL_coexpression_mm9:3220 |
Association with transcript: | 16bp_to_ENSMUST00000010049, NM_027534, uc007cgy.2_5end |
EntrezGene: | Kdsr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.05e-11 | 95 |
ectoderm | 2.05e-11 | 95 |
presumptive ectoderm | 2.05e-11 | 95 |
ecto-epithelium | 3.01e-11 | 73 |
brain | 7.51e-10 | 47 |
future brain | 7.51e-10 | 47 |
regional part of brain | 1.44e-09 | 46 |
pre-chordal neural plate | 3.19e-09 | 49 |
neurectoderm | 9.30e-09 | 64 |
neural plate | 9.30e-09 | 64 |
presumptive neural plate | 9.30e-09 | 64 |
regional part of nervous system | 3.08e-08 | 54 |
neural tube | 3.74e-08 | 52 |
neural rod | 3.74e-08 | 52 |
future spinal cord | 3.74e-08 | 52 |
neural keel | 3.74e-08 | 52 |
anterior neural tube | 9.66e-08 | 40 |
regional part of forebrain | 1.27e-07 | 39 |
forebrain | 1.27e-07 | 39 |
future forebrain | 1.27e-07 | 39 |
adult organism | 1.41e-07 | 51 |
brain grey matter | 1.47e-07 | 29 |
regional part of telencephalon | 1.47e-07 | 29 |
telencephalon | 1.47e-07 | 29 |
nervous system | 2.06e-07 | 75 |
cerebral cortex | 5.15e-07 | 21 |
cerebral hemisphere | 5.15e-07 | 21 |
pallium | 5.15e-07 | 21 |
central nervous system | 5.99e-07 | 73 |
regional part of cerebral cortex | 9.94e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.