FFCP PHASE1:Hg19::chr9:118915863..118915909,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5069 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8602 | |||
|TSSclassifier=W | |||
|UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | |||
|association_with_transcript=-161bp_to_NM_002581,uc004bjn.2_5end | |||
|coexpression_cluster_id=C4794 | |||
|description=CAGE_peak_4_at_PAPPA_5end | |||
|id=chr9:118915863..118915909,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.25e-41!180;CL:0000057!2.07e-26!75;CL:0000187!1.32e-23!54;CL:0000680!1.21e-22!57;CL:0000056!1.21e-22!57;CL:0000355!1.21e-22!57;CL:0000183!6.21e-22!59;CL:0000393!2.50e-19!60;CL:0000211!2.50e-19!60;CL:0000192!1.60e-17!42;CL:0000514!1.60e-17!42;CL:0000359!1.93e-13!32;CL:0002620!3.51e-11!23;CL:0002494!8.06e-10!16;CL:0000048!1.94e-09!430;CL:0000723!1.04e-08!436;CL:0000034!3.49e-08!444;CL:0000222!4.54e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000187;7.04e-16;55!CL:0000359;2.68e-15;32!CL:0000192;2.01e-14;43!CL:0002620;3.11e-13;23!CL:0000393;2.16e-12;61!CL:0000211;2.16e-12;61!CL:0002494;4.32e-12;16!CL:0000134;7.96e-12;55!CL:0000723;2.36e-11;61!CL:0000057;6.75e-11;73!CL:0000048;3.27e-10;58!CL:0000349;3.72e-08;19!CL:0002334;7.46e-08;12!CL:0002320;1.58e-07;188!CL:0000188;2.10e-07;9!CL:0000034;3.29e-07;69!CL:0002570;3.50e-07;8!CL:0002539;4.33e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.07e-29,76;CL:0000187,6.48e-28,55;CL:0000680,1.85e-25,58;CL:0000056,1.85e-25,58;CL:0000355,1.85e-25,58;CL:0000393,2.90e-23,61;CL:0000211,2.90e-23,61;CL:0000192,3.38e-20,43;CL:0000514,3.38e-20,43;CL:0000048,4.90e-19,427;CL:0000723,4.93e-18,433;CL:0000034,9.43e-17,441;CL:0000359,4.88e-16,32;CL:0002620,3.83e-13,23;CL:0002494,3.72e-12,16;CL:0000222,3.01e-09,121;CL:0002334,5.76e-08,12;CL:0000349,5.91e-08,19;CL:0000188,2.23e-07,9;CL:0002570,3.47e-07,8;CL:0002539,5.16e-07,10;CL:0002320,6.77e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000514;2.01e-14;43!CL:0000355;6.24e-14;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.09e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.14e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-21!83;UBERON:0002329!1.01e-21!83;UBERON:0003077!1.01e-21!83;UBERON:0003059!1.01e-21!83;UBERON:0007282!1.01e-21!83;UBERON:0009618!1.01e-21!83;UBERON:0007285!1.01e-21!83;UBERON:0004290!9.89e-21!70;UBERON:0001134!4.30e-20!61;UBERON:0002036!4.30e-20!61;UBERON:0003082!4.30e-20!61;UBERON:0002385!2.91e-19!63;UBERON:0001015!2.91e-19!63;UBERON:0000383!2.91e-19!63;UBERON:0000486!8.88e-18!82;UBERON:0005256!5.15e-13!143;UBERON:0004872!7.06e-12!84;UBERON:0002100!2.70e-10!216;UBERON:0000475!1.24e-09!365;UBERON:0000948!1.66e-08!24;UBERON:0005498!1.66e-08!24;UBERON:0004140!1.66e-08!24;UBERON:0009881!1.66e-08!24;UBERON:0004141!1.66e-08!24;UBERON:0003084!1.66e-08!24;UBERON:0007005!1.66e-08!24;UBERON:0004139!1.66e-08!24;UBERON:0004291!1.66e-08!24;UBERON:0001637!4.08e-08!42;UBERON:0003509!4.08e-08!42;UBERON:0004572!4.08e-08!42;UBERON:0000481!4.93e-08!347;UBERON:0002049!6.24e-08!79;UBERON:0007798!6.24e-08!79;UBERON:0007100!6.68e-08!27;UBERON:0004535!9.24e-08!110;UBERON:0001009!1.09e-07!113;UBERON:0004573!1.28e-07!33;UBERON:0004571!1.28e-07!33;UBERON:0003104!1.44e-07!238;UBERON:0009142!1.44e-07!238;UBERON:0002199!3.01e-07!45;UBERON:0002416!3.01e-07!45;UBERON:0000490!3.28e-07!138;UBERON:0002097!8.39e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.25e-09;33!UBERON:0004571;5.25e-09;33!UBERON:0000948;2.18e-08;22!UBERON:0002385;3.11e-08;31!UBERON:0001015;3.11e-08;31!UBERON:0000383;3.11e-08;31!UBERON:0002384;4.25e-08;198!UBERON:0001135;1.48e-07;15!UBERON:0000478;1.53e-07;24!UBERON:0001637;2.31e-07;42!UBERON:0003509;2.31e-07;42!UBERON:0004572;2.31e-07;42!UBERON:0004237;4.33e-07;10!UBERON:0004695;4.33e-07;10!UBERON:0002111;4.33e-07;10!UBERON:0004178;4.33e-07;10!UBERON:0007100;9.94e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.91e-23,71;UBERON:0003059,3.91e-23,71;UBERON:0007282,3.91e-23,71;UBERON:0004290,3.91e-23,71;UBERON:0009618,3.91e-23,71;UBERON:0007524,8.50e-23,73;UBERON:0001134,1.39e-22,62;UBERON:0002036,1.39e-22,62;UBERON:0003082,1.39e-22,62;UBERON:0003077,1.58e-22,72;UBERON:0007285,1.58e-22,72;UBERON:0002385,2.71e-21,64;UBERON:0001015,2.71e-21,64;UBERON:0000383,2.71e-21,64;UBERON:0007503,4.68e-20,78;UBERON:0000486,1.06e-18,83;UBERON:0004872,1.15e-13,83;UBERON:0005256,9.85e-13,122;UBERON:0003104,4.28e-12,160;UBERON:0009142,4.28e-12,160;UBERON:0004535,3.15e-11,109;UBERON:0001637,7.54e-11,42;UBERON:0003509,7.54e-11,42;UBERON:0004572,7.54e-11,42;UBERON:0001009,1.85e-10,112;UBERON:0002049,3.17e-10,78;UBERON:0007798,3.17e-10,78;UBERON:0004573,8.88e-10,33;UBERON:0004571,8.88e-10,33;UBERON:0000948,1.45e-09,24;UBERON:0005498,1.45e-09,24;UBERON:0004140,1.45e-09,24;UBERON:0009881,1.45e-09,24;UBERON:0004141,1.45e-09,24;UBERON:0003084,1.45e-09,24;UBERON:0007005,1.45e-09,24;UBERON:0004139,1.45e-09,24;UBERON:0004291,1.45e-09,24;UBERON:0000490,9.31e-09,148;UBERON:0002199,2.20e-08,46;UBERON:0002416,2.20e-08,46;UBERON:0000926,4.74e-08,315;UBERON:0004120,4.74e-08,315;UBERON:0006603,4.74e-08,315;UBERON:0007100,8.40e-08,27;UBERON:0007500,9.06e-08,59;UBERON:0001981,9.06e-08,59;UBERON:0004537,9.06e-08,59;UBERON:0006965,9.06e-08,59;UBERON:0002097,1.13e-07,41;UBERON:0001135,1.77e-07,15;UBERON:0003914,2.09e-07,117;UBERON:0000478,2.32e-07,24;UBERON:0002100,3.45e-07,199;UBERON:0002384,4.20e-07,371;UBERON:0004237,5.16e-07,10;UBERON:0004695,5.16e-07,10;UBERON:0002111,5.16e-07,10;UBERON:0004178,5.16e-07,10 | |||
|phase1_expression=0.726713517082227,2.35510576280081,1.9733616573436,1.0007329835313,4.02264984984559,2.61701557230111,0,1.26343974685366,1.56711376919903,2.21160542851358,0,6.55324116390517,3.69273769519835,1.98026164736075,6.62794751455832,2.01697543935533,2.41077811209591,3.65155045193687,1.46379839637152,0.246242116153576,0,0,0.286235987131057,1.09499540058307,1.38096903554283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,8.71911117614727,2.68511379871414,2.1686349143074,5.0133791063589,3.18662341713812,0.795285947051099,1.45990461090791,2.07976597760949,4.43458794925128,5.09441757020131,1.63723844372141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.993943903390637,4.81195944325403,6.75286822147416,28.9704986956302,2.4826786753885,1.68203280042692,4.2699598291882,4.68668341992604,8.09148692039392,13.0669351907597,9.31732847746715,7.11379909931178,4.60940739583999,3.98346434117454,4.68240115245481,0,1.04614076386261,2.11382097558777,0.971237666208789,1.40450806702248,1.63323337003915,0.122834317311768,2.58314452939414,7.12801714369232,3.95627086845691,1.82032272387605,1.43723628363248,0.168336113954066,0.500474079487857,0.831192346452549,0.877955241761676,1.22595118319608,3.90618953157152,4.99101605904093,6.27863724911017,8.11518077510556,5.72216133130817,7.50227740211006,9.89304280689013,7.72921620136887,1.67505170698431,6.58227695740938,6.72315335612271,13.6314238091822,8.46859067509154,4.84938170456436,7.10019185033229,2.31729825923573,3.05209066158878,0.386521706326594,0,0.860413786167011,0.243947412259191,0,0,0.621966330092223,0.252320850875628,0,4.69348596989448,1.92972281457866,0,4.64367928031979,2.16563844500876,0.236613600079688,1.01150814046861,0.241011029883482,0.55146986366197,0.435758888184812,0.237270619111097,0,0.588664395376038,1.15424147083917,0,2.80483547606892,1.6462960453256,1.47008711385542,0,0,0,0,0,7.20584803253807,0.109750285408626,0,0,0,3.58389135841357,2.07986957055916,0,1.04337364477569,17.4938954411374,0,0,0,0,0,0,0,0,0,1.6798212819886,1.27597587518148,0,0,0,0,0,0,0,0.25248486685276,0,0,0,5.13217338068116,0,0,0,1.00917975910825,0.87192013766656,0.2933531432838,1.16344544182,10.7296933755565,2.535908257668,5.58470044828228,3.12022310734098,0.257207374262142,0,0.266422179016099,4.00338382242813,1.08524321078289,9.87888404136923,2.60588947434988,5.68627117988073,9.50342247520115,0.301439377059586,0.871533458600294,3.09916272664377,0,0,0,2.39624855491583,1.14861935834114,1.42636905040718,0.723906533337896,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,4.53958519360818,1.50051156317903,2.17012018959788,8.11086359970148,10.1704523614382,9.14674007196821,8.66846470946078,2.70851489754947,2.27407504055985,1.03473071292505,0.664225598535437,1.10621501125022,3.5622281931914,0.587403472388222,0,0,0,0,0.606255142892519,1.66435439510497,4.5358543999452,2.72918588600655,8.5938705041315,4.2099014164961,3.58789617915963,2.55853624533352,4.66476371316462,2.96836132889982,1.23367755042124,2.66342587969691,4.43486642474569,5.71179872101983,3.25389059687886,0,0.40101294060657,0,4.82220682291348,1.63882051206045,0.917870904715969,0,0,0,0,0,0,0,0,0,0.270946437543853,1.50506932156456,0,0.831076008928724,0,0,0.261435451024901,0.256450125116389,0.656029291399411,0.325378394664303,29.8818933778395,0,0,0.574265537996172,0,1.6068392984416,5.51023094265095,6.00789606747113,6.60065801322357,3.30807773962873,9.3455613035398,10.4412019618245,3.83519823372454,3.38321735457602,0,0,0,0,2.32422774648643,50.0551631460718,5.5762981612848,5.85263802334569,2.12922412126809,7.82939692867565,2.03856641014312,2.00374841438788,1.48863347743867,5.69482964493707,4.38449446024797,3.32667128704734,5.99114583247489,5.72765846266686,1.56989728039846,4.13706652441624,7.68703683260953,7.53999375012393,2.62837226045311,3.17020642346017,1.26377536871694,0.975267478179181,4.14312932373184,2.11300293513511,3.27599787379166,2.82810863907426,3.39024349860728,8.27048015319186,1.32687795048244,0.438450885253763,4.05142873986681,5.9030527684197,3.04365565444056,1.54911749049875,1.97186921772569,6.45351084918232,5.20719917369542,3.92338156629375,0.709522128141196,1.68886108238131,4.61012850143863,0.379473173765715,1.74967360122491,0,0.670302275535787,0,27.4899898268195,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.146508179271894,0,0,0,4.05865624054073,0,0,0,0,0.333926115068718,0,0,1.39473591775749,0,0,0.613612095012929,0,1.24415835064723,0.0898683511473268,0.716084698702437,0,1.1837208676432,0,1.11136990144637,0,0,1.99613798001194,0,0,0.724999575434793,0,0,0,0,1.45802306691627,0,0,0,0,0,0,0,0.10893846351899,0,0.923403102045565,0.455768223388005,0,0,0,7.65602783356607,4.39668448328939,15.991043280559,0,0,0.332423363800313,0,0,0,0,0,0,0.16323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| |||
|short_description=p4@PAPPA | |||
}} |
Revision as of 07:10, 14 September 2013
Short description: | p4@PAPPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PAPPA_5end |
Coexpression cluster: | C4794_placenta_Smooth_Fibroblast_neuroectodermal_Lens_mesenchymal_chorionic |
Association with transcript: | -161bp_to_NM_002581, uc004bjn.2_5end |
EntrezGene: | PAPPA |
HGNC: | 8602 |
UniProt: | Q13219Q7Z613Q86YM8Q8IWT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.07e-29 | 76 |
muscle cell | 6.48e-28 | 55 |
muscle precursor cell | 1.85e-25 | 58 |
myoblast | 1.85e-25 | 58 |
multi-potent skeletal muscle stem cell | 1.85e-25 | 58 |
electrically responsive cell | 2.90e-23 | 61 |
electrically active cell | 2.90e-23 | 61 |
smooth muscle cell | 3.38e-20 | 43 |
smooth muscle myoblast | 3.38e-20 | 43 |
multi fate stem cell | 4.90e-19 | 427 |
somatic stem cell | 4.93e-18 | 433 |
stem cell | 9.43e-17 | 441 |
vascular associated smooth muscle cell | 4.88e-16 | 32 |
skin fibroblast | 3.83e-13 | 23 |
cardiocyte | 3.72e-12 | 16 |
mesodermal cell | 3.01e-09 | 121 |
preadipocyte | 5.76e-08 | 12 |
extraembryonic cell | 5.91e-08 | 19 |
cell of skeletal muscle | 2.23e-07 | 9 |
mesenchymal stem cell of adipose | 3.47e-07 | 8 |
aortic smooth muscle cell | 5.16e-07 | 10 |
connective tissue cell | 6.77e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.14e-07 | 14 |
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