FFCP PHASE1:Mm9::chr8:11797411..11797448,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=263|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:11797411..11797448,+|id=chr8:11797411..11797448,+|ontology_enrichment_celltype=CL:0000221!1.86e-15!44;CL:0000133!1.86e-15!44;CL:0002319!8.07e-15!43;CL:0000055!8.08e-13!50;CL:0000540!9.19e-09!33;CL:0000047!9.19e-09!33;CL:0000031!9.19e-09!33;CL:0000404!9.19e-09!33;CL:0000107!3.12e-08!9;CL:0000333!5.63e-08!10;CL:0000095!5.63e-08!10;CL:0000243!5.63e-08!10;CL:0000123!5.63e-08!10;CL:0000125!5.63e-08!10;CL:0000030!5.63e-08!10;CL:0000339!5.63e-08!10;CL:0000393!8.35e-08!39;CL:0000211!8.35e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.69e-29,44;CL:0000133,1.69e-29,44;CL:0002319,4.23e-28,43;CL:0000107,1.38e-16,9;CL:0000540,1.98e-16,33;CL:0000047,1.98e-16,33;CL:0000031,1.98e-16,33;CL:0000404,1.98e-16,33;CL:0002321,2.65e-15,70;CL:0000333,1.25e-13,10;CL:0000095,1.25e-13,10;CL:0000243,1.25e-13,10;CL:0000123,1.25e-13,10;CL:0000125,1.25e-13,10;CL:0000030,1.25e-13,10;CL:0000339,1.25e-13,10;CL:0000393,5.02e-13,39;CL:0000211,5.02e-13,39;CL:0002453,3.28e-10,8;CL:0000128,2.97e-07,6;CL:0000126,2.97e-07,6;CL:0000127,2.97e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.52e-20!75;UBERON:0001016!1.52e-20!75;UBERON:0004121!4.40e-19!102;UBERON:0000924!4.40e-19!102;UBERON:0006601!4.40e-19!102;UBERON:0001017!4.95e-19!73;UBERON:0005743!4.95e-19!73;UBERON:0000010!8.11e-10!11;UBERON:0002346!2.02e-09!71;UBERON:0003075!2.02e-09!71;UBERON:0007284!2.02e-09!71;UBERON:0001049!9.73e-09!52;UBERON:0005068!9.73e-09!52;UBERON:0006241!9.73e-09!52;UBERON:0007135!9.73e-09!52;UBERON:0002410!3.12e-08!9;UBERON:0000955!6.37e-08!50;UBERON:0006238!6.37e-08!50;UBERON:0003076!1.20e-07!12;UBERON:0003057!1.20e-07!12;UBERON:0002616!1.21e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.05e-34,75;UBERON:0001017,1.33e-31,73;UBERON:0004121,5.67e-28,95;UBERON:0000924,5.67e-28,95;UBERON:0006601,5.67e-28,95;UBERON:0000010,3.73e-20,11;UBERON:0002410,1.38e-16,9;UBERON:0000073,6.56e-15,54;UBERON:0002346,5.09e-14,64;UBERON:0003075,5.09e-14,64;UBERON:0007284,5.09e-14,64;UBERON:0001049,7.23e-13,52;UBERON:0005068,7.23e-13,52;UBERON:0006241,7.23e-13,52;UBERON:0007135,7.23e-13,52;UBERON:0010371,1.78e-12,73;UBERON:0003076,6.25e-12,12;UBERON:0003057,6.25e-12,12;UBERON:0002616,9.56e-09,46;UBERON:0000955,1.87e-08,47;UBERON:0006238,1.87e-08,47;UBERON:0010314,2.59e-08,92;UBERON:0002020,2.98e-07,34;UBERON:0011216,4.29e-07,194;UBERON:0002240,7.11e-07,6;UBERON:0005174,7.11e-07,6;UBERON:0001137,7.11e-07,6;UBERON:0000011,9.55e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.70642765846759,7.0299578475031,3.4997381833371,5.5994568650145,8.62515386189829,0,0,0,0.514518872071894,0.573066879877513,0.515672092277442,0,1.05798195854407,0.633831403506179,0.677689064138264,0.889294796111139,0,0,0,6.2916023208865,6.14749288514487,0,0,0,5.71301968807607,8.39300455616131,0,0,0,5.50579404996943,3.31987079021488,2.76491759861238,0.263772575460388,0.548925861614458,0.52091337055676,4.18774498502071,1.12552522006336,2.59757021220577,5.00868595305235,3.27454865837937,0.372798891650601,46.8745136732409,43.1513608209745,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,4.78867627240714,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.913396434936424,0.922461989024234,0.60289056221049,0.470354828542819,0.376999773989026,0,0,0,0.485300549842228,0,0,0,3.22058876712702,5.23616767033638,0,0,0,0,4.04434726393021,2.74500361691176,0.251308704225729,0.869121600961382,0.767146371990992,2.90903262383384,2.92034273521964,0,0.124406970610093,0,0,0,0,0,0.150704817835715,0.0680364991513279,0,0.281105173679186,1.81092359517311,0,0,0,0.219195732427575,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0.492502392237286,0.162137619091711,0.292399974850665,0.439100230582101,0.402619256281115,0.630869845692382,0.823236899034275,0,0.264450566663544,0,0.232236671860439,0.128867461322093,0.403367049246685,0,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0.648414149624083,0,0,0,1.1270773567308,1.01825663922657,0.387904974335251,0.0701358198903186,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0,0.476087281772027,0.195133647857799,0.472905432318573,0.8858587585951,0.478364305972461,0.491589944147214,0.345369963731791,0.144649058581512,0,0,0,0,1.60550589987792,3.7507739709505,0,0,8.51872192423893,11.7131623288992,16.1567548299599,16.7278158566786,20.943075363745,18.6830510320629,14.1683745586213,14.6127928955656,15.0209355619679,0.642642632843614,0.141940085208269,0.178065603667255,0.162886959353576,0,1.32745138339963,0,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0,0,0.658196082408484,1.2178597964584,0.23467170806371,0,0.44105679610992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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=263 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:11797411..11797448,+ | |||
|id=chr8:11797411..11797448,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.86e-15!44;CL:0000133!1.86e-15!44;CL:0002319!8.07e-15!43;CL:0000055!8.08e-13!50;CL:0000540!9.19e-09!33;CL:0000047!9.19e-09!33;CL:0000031!9.19e-09!33;CL:0000404!9.19e-09!33;CL:0000107!3.12e-08!9;CL:0000333!5.63e-08!10;CL:0000095!5.63e-08!10;CL:0000243!5.63e-08!10;CL:0000123!5.63e-08!10;CL:0000125!5.63e-08!10;CL:0000030!5.63e-08!10;CL:0000339!5.63e-08!10;CL:0000393!8.35e-08!39;CL:0000211!8.35e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.69e-29,44;CL:0000133,1.69e-29,44;CL:0002319,4.23e-28,43;CL:0000107,1.38e-16,9;CL:0000540,1.98e-16,33;CL:0000047,1.98e-16,33;CL:0000031,1.98e-16,33;CL:0000404,1.98e-16,33;CL:0002321,2.65e-15,70;CL:0000333,1.25e-13,10;CL:0000095,1.25e-13,10;CL:0000243,1.25e-13,10;CL:0000123,1.25e-13,10;CL:0000125,1.25e-13,10;CL:0000030,1.25e-13,10;CL:0000339,1.25e-13,10;CL:0000393,5.02e-13,39;CL:0000211,5.02e-13,39;CL:0002453,3.28e-10,8;CL:0000128,2.97e-07,6;CL:0000126,2.97e-07,6;CL:0000127,2.97e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.52e-20!75;UBERON:0001016!1.52e-20!75;UBERON:0004121!4.40e-19!102;UBERON:0000924!4.40e-19!102;UBERON:0006601!4.40e-19!102;UBERON:0001017!4.95e-19!73;UBERON:0005743!4.95e-19!73;UBERON:0000010!8.11e-10!11;UBERON:0002346!2.02e-09!71;UBERON:0003075!2.02e-09!71;UBERON:0007284!2.02e-09!71;UBERON:0001049!9.73e-09!52;UBERON:0005068!9.73e-09!52;UBERON:0006241!9.73e-09!52;UBERON:0007135!9.73e-09!52;UBERON:0002410!3.12e-08!9;UBERON:0000955!6.37e-08!50;UBERON:0006238!6.37e-08!50;UBERON:0003076!1.20e-07!12;UBERON:0003057!1.20e-07!12;UBERON:0002616!1.21e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.05e-34,75;UBERON:0001017,1.33e-31,73;UBERON:0004121,5.67e-28,95;UBERON:0000924,5.67e-28,95;UBERON:0006601,5.67e-28,95;UBERON:0000010,3.73e-20,11;UBERON:0002410,1.38e-16,9;UBERON:0000073,6.56e-15,54;UBERON:0002346,5.09e-14,64;UBERON:0003075,5.09e-14,64;UBERON:0007284,5.09e-14,64;UBERON:0001049,7.23e-13,52;UBERON:0005068,7.23e-13,52;UBERON:0006241,7.23e-13,52;UBERON:0007135,7.23e-13,52;UBERON:0010371,1.78e-12,73;UBERON:0003076,6.25e-12,12;UBERON:0003057,6.25e-12,12;UBERON:0002616,9.56e-09,46;UBERON:0000955,1.87e-08,47;UBERON:0006238,1.87e-08,47;UBERON:0010314,2.59e-08,92;UBERON:0002020,2.98e-07,34;UBERON:0011216,4.29e-07,194;UBERON:0002240,7.11e-07,6;UBERON:0005174,7.11e-07,6;UBERON:0001137,7.11e-07,6;UBERON:0000011,9.55e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.70642765846759,7.0299578475031,3.4997381833371,5.5994568650145,8.62515386189829,0,0,0,0.514518872071894,0.573066879877513,0.515672092277442,0,1.05798195854407,0.633831403506179,0.677689064138264,0.889294796111139,0,0,0,6.2916023208865,6.14749288514487,0,0,0,5.71301968807607,8.39300455616131,0,0,0,5.50579404996943,3.31987079021488,2.76491759861238,0.263772575460388,0.548925861614458,0.52091337055676,4.18774498502071,1.12552522006336,2.59757021220577,5.00868595305235,3.27454865837937,0.372798891650601,46.8745136732409,43.1513608209745,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,4.78867627240714,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.913396434936424,0.922461989024234,0.60289056221049,0.470354828542819,0.376999773989026,0,0,0,0.485300549842228,0,0,0,3.22058876712702,5.23616767033638,0,0,0,0,4.04434726393021,2.74500361691176,0.251308704225729,0.869121600961382,0.767146371990992,2.90903262383384,2.92034273521964,0,0.124406970610093,0,0,0,0,0,0.150704817835715,0.0680364991513279,0,0.281105173679186,1.81092359517311,0,0,0,0.219195732427575,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0.492502392237286,0.162137619091711,0.292399974850665,0.439100230582101,0.402619256281115,0.630869845692382,0.823236899034275,0,0.264450566663544,0,0.232236671860439,0.128867461322093,0.403367049246685,0,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0.648414149624083,0,0,0,1.1270773567308,1.01825663922657,0.387904974335251,0.0701358198903186,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0,0.476087281772027,0.195133647857799,0.472905432318573,0.8858587585951,0.478364305972461,0.491589944147214,0.345369963731791,0.144649058581512,0,0,0,0,1.60550589987792,3.7507739709505,0,0,8.51872192423893,11.7131623288992,16.1567548299599,16.7278158566786,20.943075363745,18.6830510320629,14.1683745586213,14.6127928955656,15.0209355619679,0.642642632843614,0.141940085208269,0.178065603667255,0.162886959353576,0,1.32745138339963,0,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0,0,0.658196082408484,1.2178597964584,0.23467170806371,0,0.441056796109924,0.8244312647074,0.322928853391811,0.422190474497091,0.477489376012546,0.656563598980245,0,1.48340241608408,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0.158167996790568,0.203319467126849,0.108005340821801,0.418176592028937,0,0.539457385539283,0.165306911450672,0.26175594198403,0.129614973291793,0,1.69107881605257,0.598066184175915,0.992750942742586,0.194451188344048,0.129159823477731,0.675824501963113,0.117357238645754,0.911430693907651,0.943734099831398,1.69108884578204,1.72818003754719,0,0,0.102710957164827,0.129920822977795,0,0.198681354781265,0,0,0.100966449948148,0,0,0,0.0962118416403295,0,0.453460767230423,0,0,0,0.386379188064381,0.375364950902364,0,0.428736758158132,0,3.3885110557024,4.14292712856459,4.58316410751517,1.89038500578056,0.685082519770642,0.755393897389701,2.70009000092722,0,0,0,0.103787347584177,0,0.170733605754134,0,0.209613162627982,0,0.44449345560323,0.618105171716683,0.320919209591815,0.252697211763798,1.01391719956096,0,0.561849044819294,0.448176066834085,0.229741875822453,0,0.463537303779422,0.38581844092741,1.23625770240992,0.147198920134397,0,0.354951612318675,0.476872379894642,0.581385666529314,0.658765662907314,0.592302255241736,0.182927972872773,0.263069711437843,0.407412341537585,1.12228454331548,0.355905054372522,0.29551344712669,0.409231043169689,0,0.385813221962283,1.24905288968973,0.467863216890817,0.429742108096597,1.14772999241306,0.661774257358546,0.927471342481686 | |||
|short_description=p@chr8:11797411..11797448,+ | |||
}} |
Revision as of 14:51, 14 September 2013
Short description: | p@chr8:11797411..11797448, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:11797411..11797448, + |
Coexpression cluster: | MCL_coexpression_mm9:263 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.69e-29 | 44 |
neurectodermal cell | 1.69e-29 | 44 |
neural cell | 4.23e-28 | 43 |
autonomic neuron | 1.38e-16 | 9 |
neuron | 1.98e-16 | 33 |
neuronal stem cell | 1.98e-16 | 33 |
neuroblast | 1.98e-16 | 33 |
electrically signaling cell | 1.98e-16 | 33 |
embryonic cell | 2.65e-15 | 70 |
migratory neural crest cell | 1.25e-13 | 10 |
neuron associated cell | 1.25e-13 | 10 |
glial cell (sensu Vertebrata) | 1.25e-13 | 10 |
neuron associated cell (sensu Vertebrata) | 1.25e-13 | 10 |
glial cell | 1.25e-13 | 10 |
glioblast | 1.25e-13 | 10 |
glioblast (sensu Vertebrata) | 1.25e-13 | 10 |
electrically responsive cell | 5.02e-13 | 39 |
electrically active cell | 5.02e-13 | 39 |
oligodendrocyte precursor cell | 3.28e-10 | 8 |
oligodendrocyte | 2.97e-07 | 6 |
macroglial cell | 2.97e-07 | 6 |
astrocyte | 2.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.05e-34 | 75 |
central nervous system | 1.33e-31 | 73 |
ectoderm-derived structure | 5.67e-28 | 95 |
ectoderm | 5.67e-28 | 95 |
presumptive ectoderm | 5.67e-28 | 95 |
peripheral nervous system | 3.73e-20 | 11 |
autonomic nervous system | 1.38e-16 | 9 |
regional part of nervous system | 6.56e-15 | 54 |
neurectoderm | 5.09e-14 | 64 |
neural plate | 5.09e-14 | 64 |
presumptive neural plate | 5.09e-14 | 64 |
neural tube | 7.23e-13 | 52 |
neural rod | 7.23e-13 | 52 |
future spinal cord | 7.23e-13 | 52 |
neural keel | 7.23e-13 | 52 |
ecto-epithelium | 1.78e-12 | 73 |
posterior neural tube | 6.25e-12 | 12 |
chordal neural plate | 6.25e-12 | 12 |
regional part of brain | 9.56e-09 | 46 |
brain | 1.87e-08 | 47 |
future brain | 1.87e-08 | 47 |
structure with developmental contribution from neural crest | 2.59e-08 | 92 |
gray matter | 2.98e-07 | 34 |
organ system subdivision | 4.29e-07 | 194 |
spinal cord | 7.11e-07 | 6 |
dorsal region element | 7.11e-07 | 6 |
dorsum | 7.11e-07 | 6 |
parasympathetic nervous system | 9.55e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.