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MCL coexpression mm9:2282: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=}}
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Latest revision as of 18:17, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr1:13364202..13364263,-p3@Ncoa2
Mm9::chr4:119705371..119705471,+p@chr4:119705371..119705471
+
Mm9::chr4:119705481..119705512,+p@chr4:119705481..119705512
+
Mm9::chr4:119808753..119808782,+p@chr4:119808753..119808782
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
respiratory tract1.02e-0941
respiratory system4.43e-0942
pharynx5.67e-0924
upper respiratory tract5.67e-0924
chordate pharynx5.67e-0924
pharyngeal arch system5.67e-0924
pharyngeal region of foregut5.67e-0924
thymus7.41e-0923
neck7.41e-0923
respiratory system epithelium7.41e-0923
hemolymphoid system gland7.41e-0923
pharyngeal epithelium7.41e-0923
thymic region7.41e-0923
pharyngeal gland7.41e-0923
entire pharyngeal arch endoderm7.41e-0923
thymus primordium7.41e-0923
early pharyngeal endoderm7.41e-0923
nervous system1.85e-0875
central nervous system2.13e-0873
hemopoietic organ2.25e-0829
immune organ2.25e-0829
gland of gut5.20e-0824
occipital lobe8.54e-0810
visual cortex8.54e-0810
neocortex8.54e-0810
cerebral cortex1.09e-0721
cerebral hemisphere1.09e-0721
pallium1.09e-0721
gray matter1.18e-0734
regional part of cerebral cortex5.78e-0717
ectoderm-derived structure6.68e-0795
ectoderm6.68e-0795
presumptive ectoderm6.68e-0795


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.5495
MA0004.10.6888
MA0006.10.497533
MA0007.10.672186
MA0009.11.15569
MA0014.13.29472
MA0017.11.30949
MA0019.10.964875
MA0024.11.11019
MA0025.11.39562
MA0027.12.81824
MA0028.10.509589
MA0029.11.08753
MA0030.11.09438
MA0031.11.05719
MA0038.10.846479
MA0040.11.16866
MA0041.10.604221
MA0042.10.589368
MA0043.11.25564
MA0046.11.1929
MA0048.10.266382
MA0050.10.731539
MA0051.10.856094
MA0052.11.17701
MA0055.10.790894
MA0056.10
MA0057.10.701847
MA0058.10.581673
MA0059.11.45189
MA0060.10.403071
MA0061.11.95592
MA0063.10
MA0066.10.834648
MA0067.11.50873
MA0068.10.256913
MA0069.11.17737
MA0070.11.16732
MA0071.10.73062
MA0072.11.15853
MA0073.10.363073
MA0074.11.86824
MA0076.10.550092
MA0077.11.13603
MA0078.10.891476
MA0081.10.621611
MA0083.12.80247
MA0084.11.84013
MA0087.11.21037
MA0088.10.582815
MA0089.10
MA0090.10.650768
MA0091.12.81846
MA0092.10.651119
MA0093.10.519148
MA0095.10
MA0098.10
MA0100.10.783305
MA0101.10.605676
MA0103.10.540576
MA0105.10.841866
MA0106.10.899777
MA0107.10.533522
MA0108.20.989014
MA0109.10
MA0111.10.666525
MA0113.10.869608
MA0114.10.43587
MA0115.11.25852
MA0116.10.497293
MA0117.11.22527
MA0119.10.606338
MA0122.11.24573
MA0124.11.45461
MA0125.11.37907
MA0130.10
MA0131.10.960068
MA0132.10
MA0133.10
MA0135.11.29308
MA0136.10.817395
MA0139.10.365453
MA0140.10.78318
MA0141.10.563066
MA0142.11.04199
MA0143.10.887119
MA0144.10.439506
MA0145.11.14526
MA0146.10.647546
MA0147.11.15069
MA0148.10.706718
MA0149.10.611881
MA0062.20.319836
MA0035.20.788288
MA0039.20.238019
MA0138.20.951653
MA0002.20.965577
MA0137.20.559766
MA0104.21.0034
MA0047.20.845655
MA0112.21.14524
MA0065.20.609584
MA0150.10.67206
MA0151.10
MA0152.10.84577
MA0153.11.31015
MA0154.10.728853
MA0155.10.650923
MA0156.10.549102
MA0157.11.0083
MA0158.10
MA0159.10.465802
MA0160.10.71003
MA0161.10
MA0162.11.16288
MA0163.10.0996272
MA0164.10.817786
MA0080.20.534538
MA0018.20.828253
MA0099.20.944966
MA0079.21.90618
MA0102.21.8929
MA0258.10.419871
MA0259.10.441366
MA0442.10
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