FFCP PHASE1:Hg19::chr14:88459487..88459500,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2581 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4115 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000474294_5end | |||
|coexpression_cluster_id=C2319 | |||
|description=CAGE_peak_3_at_GALC_5end | |||
|id=chr14:88459487..88459500,- | |||
|ontology_enrichment_celltype=CL:0000766!9.56e-23!76;CL:0000763!1.06e-21!112;CL:0000049!1.06e-21!112;CL:0000557!1.56e-20!71;CL:0000839!1.71e-19!70;CL:0002009!3.48e-17!65;CL:0002194!4.12e-16!63;CL:0000576!4.12e-16!63;CL:0000040!4.12e-16!63;CL:0000559!4.12e-16!63;CL:0002057!6.02e-16!42;CL:0000738!7.99e-15!140;CL:0002032!1.26e-14!165;CL:0000837!1.26e-14!165;CL:0000037!6.24e-14!172;CL:0000566!6.24e-14!172;CL:0000988!3.74e-13!182;CL:0000860!8.22e-13!45;CL:0002031!9.99e-12!124;CL:0002087!6.53e-09!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.20e-13;33!CL:0002057;3.20e-13;33!CL:0000473;3.23e-13;39!CL:0000234;3.23e-13;39!CL:0000576;2.64e-11;48!CL:0000766;6.95e-11;69!CL:0000763;2.10e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.52e-27,72;CL:0000763,1.45e-25,108;CL:0000049,1.45e-25,108;CL:0000557,1.23e-24,67;CL:0000839,1.90e-23,66;CL:0002009,7.02e-21,61;CL:0002194,1.14e-19,59;CL:0000576,1.14e-19,59;CL:0000040,1.14e-19,59;CL:0000559,1.14e-19,59;CL:0000473,4.67e-19,48;CL:0000234,4.67e-19,48;CL:0000738,1.26e-17,136;CL:0002032,1.75e-17,161;CL:0000837,1.75e-17,161;CL:0000860,6.29e-17,42;CL:0002057,6.29e-17,42;CL:0000037,1.77e-16,168;CL:0000988,6.64e-16,177;CL:0002031,3.72e-14,120;CL:0002087,6.73e-11,115 | |||
|ontology_enrichment_development_v019=CL:0002057;4.53e-12;42!CL:0000049;9.15e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.63e-20!102;UBERON:0003061!4.63e-20!102;UBERON:0007023!4.70e-19!115;UBERON:0002193!6.07e-18!112;UBERON:0002371!2.79e-16!80;UBERON:0001474!1.40e-15!86;UBERON:0004765!9.77e-14!101;UBERON:0001434!9.77e-14!101;UBERON:0002405!9.68e-10!115;UBERON:0001049!5.86e-09!57;UBERON:0005068!5.86e-09!57;UBERON:0006241!5.86e-09!57;UBERON:0007135!5.86e-09!57;UBERON:0003081!4.54e-08!216;UBERON:0003080!9.34e-08!42;UBERON:0002780!2.20e-07!41;UBERON:0001890!2.20e-07!41;UBERON:0006240!2.20e-07!41;UBERON:0002204!4.09e-07!167;UBERON:0002020!4.40e-07!34;UBERON:0003528!4.40e-07!34;UBERON:0001893!6.72e-07!34;UBERON:0002791!9.24e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.68e-23,98;UBERON:0003061,1.68e-23,98;UBERON:0002193,3.73e-21,108;UBERON:0007023,6.74e-20,114;UBERON:0002371,1.31e-19,76;UBERON:0001474,4.15e-19,82;UBERON:0002405,1.84e-17,93;UBERON:0004765,3.76e-16,90;UBERON:0001434,5.03e-15,100;UBERON:0003081,4.72e-11,203;UBERON:0001049,3.98e-09,56;UBERON:0005068,3.98e-09,56;UBERON:0006241,3.98e-09,56;UBERON:0007135,3.98e-09,56;UBERON:0000073,7.95e-08,53;UBERON:0002616,7.95e-08,53;UBERON:0002780,2.10e-07,41;UBERON:0001890,2.10e-07,41;UBERON:0003080,2.10e-07,41;UBERON:0006240,2.10e-07,41;UBERON:0003528,3.29e-07,34;UBERON:0002020,3.29e-07,34;UBERON:0002204,3.97e-07,167;UBERON:0001893,5.12e-07,34 | |||
|phase1_expression=2.36181893051724,1.71280419112787,1.9733616573436,2.00146596706261,4.02264984984559,0.872338524100369,0,0,0.522371256399677,0.982935746006035,1.39560233594486,1.74753097704138,0.263766978228454,0.866364470720326,0.331397375727916,1.34465029290355,1.20538905604795,1.46062018077475,1.46379839637152,0.246242116153576,0,0.313454721478088,1.14494394852423,0.410623275218653,1.00434111675842,0.152826811495903,0.0821005894499457,0.708397031823113,7.86728553697808,3.45446458287491,1.70297735647684,0.919421224478927,1.50602959389125,1.84877005083394,0.619737604642413,0,0.880801318004542,4.9859586767869,3.81034450193269,2.60413044859022,10.9718582377563,13.2796403067782,15.196958490417,2.90796477559129,2.64513160582167,5.09426528494414,5.11343881192506,2.87817521615278,2.78735733805593,12.6584652621746,10.246428261164,12.7700404139836,5.5159308917859,1.29096936716765,6.77132432971709,5.08254316765033,2.18324920046277,4.71919317334678,9.79468455586888,5.77672248736969,8.31138263538754,11.2149442063483,9.17532825059507,6.39337125799041,8.9964863974861,4.53908179752912,3.73693349397345,6.78371396193207,5.21482918420201,8.90474263290978,8.47559303686716,4.78760926783834,7.59509729858123,2.5350634357433,2.97646019951061,3.56419697364239,1.34794357375794,1.80212271409808,2.4108838004562,1.99508920618874,3.9783335439818,2.37463399894024,5.27988733383968,0.546138611262131,0.889509253863555,2.13365111283254,0,1.14950487990897,0.661044872784862,0.954053754535364,0,1.17447437874188,1.14681968437569,2.64342657158052,1.68152568894461,1.84368859342554,1.57367816091066,2.35806457649499,2.46721798799411,1.00311897234407,1.30368906653436,0.946895611469467,3.89653456815823,4.79064964606246,4.12448270464772,2.21533894583621,2.70803863765016,4.22701355094728,5.46249259751489,1.80881695064044,3.03985019564433,1.44901542867526,1.03800594213442,1.60524496853828,3.1360657141493,1.13309342697566,4.21542542962113,2.74901956386104,0.759059076058509,2.54852331459277,1.30216690771284,2.85135613334512,1.95747654801105,2.30375900077953,2.49861453104692,2.60454977248419,2.46338399076314,1.81446068902259,2.40696176205157,1.73789284659359,2.43806866313962,0.670700859703636,0.767175371061182,0.722878304769133,0.50133791063589,0.289693037921647,0,0.486634870302636,0.850813354476611,0.665188192387692,1.40535657109002,2.88153966094968,0,0,4.21911611751088,5.57215159357655,3.72282289452822,1.66943437013739,1.14398982156026,0.74291500265913,0.79504962946682,1.72046919021225,0.694281003215189,1.69592382577203,1.25849830862972,1.10047216776027,1.04497483268405,0.775250277507987,1.06729878806013,2.00832367658802,0,0,0.488124115096339,0.735326160691737,4.0507097394088,0.625098097988558,0.673588117878509,1.12611480483322,1.53316637465883,0,1.64881569537367,47.4409502769828,65.9226449052153,0.436094052142534,1.49091585508596,0.759783069987479,0.794455084879313,2.58152958673932,1.06400514659507,0.560677600142307,2.1349799145941,1.2333377420858,2.17847724779836,1.88594940897563,2.61539044981534,0.908144565869588,1.15235184896,0,0.624320153660641,0,0.896692083310806,0.587172493218824,0.809364721840658,0.98315564691574,0.61246251376468,0.368502951935304,0.619954687054593,0,1.48360157567134,0,0,0.841680569770331,0.125118519871964,1.10825646193673,2.63386572528503,3.0648779579902,3.00476117813194,2.26864366320042,1.79389635688862,1.2813443329114,1.48352330811693,2.70081986475962,0.92747276314595,2.06112432036503,0.930584281657949,2.86919764810153,1.26668106709558,2.01947019395292,1.01254888506529,0.484938170456436,3.55009592516614,1.5112814734146,0.339121184620975,1.93260853163297,1.36373060295417,0.860413786167011,0.853815942907168,0.662648841607426,1.04574548582567,1.55491582523056,1.00928340350251,1.09493207722749,0,0.643240938192885,2.76269842704961,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0.982827216677626,1.77236972004421,0,1.59884970106048,1.3725424823882,0.548751427043128,0,0.301586917234893,0.555530670951178,0,0,1.44331342025273,0.463721619900307,1.17408694235822,2.02113026865503,1.85194205030644,0.380508304469197,3.95102198979638,3.43394464837949,9.60246323740849,5.85010662848094,10.8500748470772,0.93733833986777,1.51183915378974,1.98485136139341,0.53735113621709,0.290633938513962,0,5.91195885475132,10.91800581764,11.6103744702832,13.4031556677774,15.7803041782975,0.698476837213859,0.763976851116555,0,0,0.514137463516618,3.60411669412701,1.14330573052231,0.448524337381443,0,0.22001485746285,1.80980402060889,0,1.690605505112,0.797814349754612,0,0.257207374262142,0,0.532844358032199,1.71573592389777,0,0,0.325736184293735,1.77695974371273,0.791951872933429,1.80863626235752,0.871533458600294,1.29964888536674,9.72990245129524,20.5925407487172,0,1.91699884393266,3.44585807502342,2.85273810081437,1.30303176000821,2.26023954805422,1.79060963239896,0.560425719967636,2.1673383622212,2.37190332345469,2.18183161675572,2.54094624222463,3.90419561572865,2.31986643833309,0.837581326671744,1.27587750330633,35.2033301255176,26.9245313283622,21.5496066986738,1.2269149171914,1.00034104211935,0.271265023699736,0.415941723061614,1.24900292158013,0.788512075169673,1.05427273493442,0.902838299183157,2.27407504055985,0,0,1.10621501125022,1.21637060255316,0.587403472388222,0.343143423810856,1.86091223510599,1.72571360654893,2.56146138728266,0,3.32870879020994,0.907170879989041,1.48864684691266,1.53461973288062,1.12264037773229,2.17836553734692,3.07024349440022,0.965123526861645,1.48418066444991,0.154209693802656,0.532685175939381,0.492762936082855,1.03850885836724,0.697262270759755,1.57117284469109,0.200506470303285,0.736647911487171,0.803701137152247,0.364182336013434,0.655622074797121,0,0.616122696835318,0,0,1.05551628892876,2.27466768141793,0.510281115829547,1.51141141271498,0,0.541892875087706,0,0,0,0.895499018888713,4.60445740956463,2.61435451024901,0.256450125116389,0.984043937099117,1.62689197332152,1.854738209659,3.47963966309705,2.39277549769705,1.14853107599234,1.30012049207304,3.21367859688319,0.48335359146061,0.462145851343933,0.614014698904518,1.51620229732984,0.859361958946189,0.580066775656914,0.767039646744908,0.356128142586949,1.81813406897076,1.34533047155574,0.893288987462089,1.51736671283325,0,5.03699754929024,0.6970372701606,0.616067160352178,3.72614221221915,2.60979897622522,1.8532421910392,1.43124886741991,0.372158369359667,0.632758849437452,1.71567174531442,0,1.28381696410176,0,2.35484592059769,1.2591072030832,2.74537029736055,0.942499218765491,0.404364963146632,0,2.10629228119491,0,1.46228093778771,1.05650146756755,0.9554993798559,1.1312434556297,2.26016233240486,2.75682671773062,0.66343897524122,3.06915619677634,0,0,0.202910376962704,0.92947049429925,1.97186921772569,1.43411352204052,0.392996164052485,0.35667105148125,0.709522128141196,0.211107635297664,1.64647446479951,0.75894634753143,0.349934720244983,0.48111056362756,1.34060455107157,2.17781969722645,1.69458841398202,0.43050537267123,0,0,0.459446800413919,3.04468565539302,4.58782324285425,3.41788312304498,2.62054953003568,2.05681136543097,5.18778648954174,3.7802200606668,5.55187623405989,0.534120355637366,0,0.735120647943095,1.67222857613147,0,1.28055318027145,0,0,0.383010740264733,2.32840940996271,1.29848776109822,2.52717460302113,0.456469358066384,0,0,0,0.642352300414798,0.605399121573143,2.12923118845163,3.43505344755765,1.84344458585075,0.671028323677248,1.33479313369527,0.19538809540204,6.12493582569533,2.46174797895425,3.51592382018778,6.32836739195858,5.63948020351398,4.86565405061372,3.07667176470977,5.09714191347956,1.33732061132974,0,2.62618933211459,2.67268212749375,5.22173193568695,2.98244294329889,3.09472716103128,1.00177834520615,2.80166586185491,0.211125408127993,2.98871982376605,1.65770349318689,0.503865495708552,1.22722419002586,0.738508832766417,2.48831670129446,3.77447074818773,0.358042349351218,1.53471711068062,0.986434056369336,2.3948309234694,0,2.90799823828566,4.08179631912146,7.98455192004777,0.260427761085233,0.787139999965761,5.07499702804355,1.70690172428249,4.32231205497703,1.41832609060762,0,0.874813840149763,1.04174996959975,4.42870692906919,2.65312164975897,0,1.3269511191747,3.84211904639612,1.75508317723178,0,0.139423744278603,2.30850775511391,2.96249345202203,1.38338342632836,0,1.73835795075213,2.55200927785536,0.366390373607449,1.5991043280559,0,1.72678282034527,6.14983223030579,1.1279783030859,0.588187602953219,1.00692952185506,1.3282761290693,5.40384368533288,0,0.979396848954886,1.69623685720729,0,1.99052386215701,2.91909962861019,4.27721101453538,6.22694370229306,1.85345908419754,1.8795950910982,7.27932236191312,4.81546588379273,7.96499115466153,1.094728735294,0.978323094660449,1.45668227720456,0.789168805698781,9.67925728389311,0.91821828489147,3.03295582216742,0.450970258243478,0.103688191397247,1.32930774541437,0.330991955875499,0.313932918407225,0,0,0,0.520679215005393,0,1.74118413160805,2.09672001890436,0.343972064943233,0,0,0,1.16386819786103,6.26618499509652,2.93774963014692,0,0.794858446811959,2.65905343014691,2.15106521008283,4.48889393408589,2.13452994739353,1.79828648623917,0.72045208577053,2.06165873098648,2.4023299700675,0.14405479798815,0.99402028452346,0.471388069233591,0,0,0,1.73370353940911,13.2092463516154,4.92859364011175,8.94226116468806,0.859530882839914,1.31443677139657,4.18923601908381,2.52076466412852,0.717873024576814,2.59582700648688,3.004582336956,1.78537165953498,1.81395375714161,3.24269895188163,0,0,0,0,0,0,3.18091875923721,3.54128855890097,1.44677833618517,1.2378549293751,1.66176135211674,36.6707443228946,6.1904156364636,2.30848315300494,0,1.73372556058236,1.31136470337495,2.85120908602398,79.7828660031159,2.1110671705139,7.86164859010704,4.63464379255802,1.77987976358325,1.08599920350743,1.72844298240254,0,0,0.738832686744051,10.2232813071253,3.05942647104339,2.05173127149315,3.97520666736664,6.85199668716218,3.9669780522807,2.39521573038061,0.704815022316672,5.01900839068165,5.03053776318931,5.38510771951354,3.96932817449561,0.395223263795889,0.365377795142688,0.638341257770182,1.63205341010842,0.7520696820681,0.612691153526923,0.983617892129413,0.314108192500469,1.77213635993397,1.70836770862748,2.50381861413,6.30750115259078,4.10437490686353,4.59513381766237,0.553394539744923,0,0.909894705249887,0,0.705797459094515,0,1.01444720027578,1.19403842309499,0.467426619694449,1.66441758450784,1.32582103692562,1.0062716070103,1.77962244319307,1.14420034198462,1.05861646634267,0.932623203496683,1.03498604992744,0.796483835818512,3.59842489730884,1.08684069813382,0.414706207840855,1.59505028734797,1.5652351854352,0.901545653983311,4.18885733385675,2.03435366602331,2.90957854724095,1.39633724155235,0.928067519756987,1.99047944349308,1.60011105865261,0.343395705182793,0.673498977531838,1.26184898228651,0,15.2253529876197,1.04397716786085,2.493765180635,1.389134845943,3.67105056759701,0.179088841081487,0.617602894321944,3.94711289241673,2.12026975135057,0.771656153083659,1.35153952522458,0,1.38172136692479,0.607719912354764,3.87123621224846,17.7322881043844,26.4401032223593,16.6836702140961,3.27609848846413,10.8140079851637,6.97330007083469,1.59989916683944,0.320075189082423,1.20550485762571,2.83757976783418,1.65695355226657,0.279759015438889,0.622077260032973,2.17420431216208,0.107824811396682,0.629063767423586,0.436838552768056,0.678930119816101,2.33832412111851,0.495743057036009,0,0.954013051960256,0.47317047000752,0.80057074828547,1.41070377476274,2.7562092961788,2.0553352030867,1.41696576325585,3.51194489925733,4.1023272848151,2.7727886584389,2.55881834117606,5.16722066021924,11.4215536207324,0,0,0,0,1.1441462864015,0,0,2.18109952212846,3.83239630536688,0,0,1.47394725759087,2.95712172434091,2.36381546164381,5.46754669029693,2.06686796501184,1.71222687523548,3.82882366312754,1.09651553371436,2.97726707033577,0.703484977438482,0.638812138197976,1.07140367175657,0.672567444437648,3.64179362541979,0.455324382702595,1.33053555243958,0.115233987555779,1.02892805662451,3.53442611479525,2.23627430113687,7.91898733922587,0.111231401892069,2.11931350696388,3.14231179832004,1.12108865325516,5.47895232305697,0.215927591218621,0.47775168788705,2.71610867871294,0.158013611732727,2.32482850736251,0.869291361512897,0.801711364730253,0.207216164163037,0.51215543128185,1.38251932362818,0,0.354996002191696,0.766920642832419,2.54032230114557,0.22910686854405,0,0.955538938977433,1.11855431797792,0.883352102537187,0.121917924982269,0.647428837187895,1.7452677165562,3.4794432940146,2.91426595835484,1.16969731731053,2.18845852677505,0.951360726220549,0.33883824611688,0.329821550236287,1.20770274853339,6.40545512295941,33.6581723176094,0,2.20633489578515,0.471353094203252,13.5452842309312,6.83206720752298,5.4945244585842,1.52934403219035,2.34959794949634,2.2560260790752,2.19870543034844,4.10674058793012,1.41157948686277,0.0802413666891683,2.92134555298607,3.21110498383179,8.17035623963272,0.946629373159108,1.69978725477287,2.18175345170189,5.290268405154,0,1.38652688589425,0.865253124247578,0.126166424835079,0,1.14028650910293,0.815910637935854,0.534434810531121,0.459474497674225,0,2.95536923051134,2.14371304124943,7.46252495512901,7.86090768550404,2.13233981900981,4.52322419781107,2.19602293442421,1.55186785739645,1.90624166387043,3.88247665496806,8.69103912520343,1.74173398317569,3.42233301085281,1.48174516632093,3.29922144806311,1.99596213927608,0,0.960546112899439,0,0.449126010532934,0,1.58913877437726,1.22068853494722,3.99454064511308,2.21401172950129,0 | |||
|short_description=p3@GALC | |||
}} |
Revision as of 21:22, 11 January 2014
Short description: | p3@GALC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GALC_5end |
Coexpression cluster: | C2319_Eosinophils_large_immature_Neutrophils_small_migratory_Mast |
Association with transcript: | 0bp_to_ENST00000474294_5end |
EntrezGene: | GALC |
HGNC: | 4115 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.52e-27 | 72 |
myeloid cell | 1.45e-25 | 108 |
common myeloid progenitor | 1.45e-25 | 108 |
granulocyte monocyte progenitor cell | 1.23e-24 | 67 |
myeloid lineage restricted progenitor cell | 1.90e-23 | 66 |
macrophage dendritic cell progenitor | 7.02e-21 | 61 |
monopoietic cell | 1.14e-19 | 59 |
monocyte | 1.14e-19 | 59 |
monoblast | 1.14e-19 | 59 |
promonocyte | 1.14e-19 | 59 |
defensive cell | 4.67e-19 | 48 |
phagocyte | 4.67e-19 | 48 |
leukocyte | 1.26e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.75e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.75e-17 | 161 |
classical monocyte | 6.29e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.29e-17 | 42 |
hematopoietic stem cell | 1.77e-16 | 168 |
hematopoietic cell | 6.64e-16 | 177 |
hematopoietic lineage restricted progenitor cell | 3.72e-14 | 120 |
nongranular leukocyte | 6.73e-11 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.68e-23 | 98 |
blood island | 1.68e-23 | 98 |
hemolymphoid system | 3.73e-21 | 108 |
adult organism | 6.74e-20 | 114 |
bone marrow | 1.31e-19 | 76 |
bone element | 4.15e-19 | 82 |
immune system | 1.84e-17 | 93 |
skeletal element | 3.76e-16 | 90 |
skeletal system | 5.03e-15 | 100 |
lateral plate mesoderm | 4.72e-11 | 203 |
neural tube | 3.98e-09 | 56 |
neural rod | 3.98e-09 | 56 |
future spinal cord | 3.98e-09 | 56 |
neural keel | 3.98e-09 | 56 |
regional part of nervous system | 7.95e-08 | 53 |
regional part of brain | 7.95e-08 | 53 |
regional part of forebrain | 2.10e-07 | 41 |
forebrain | 2.10e-07 | 41 |
anterior neural tube | 2.10e-07 | 41 |
future forebrain | 2.10e-07 | 41 |
brain grey matter | 3.29e-07 | 34 |
gray matter | 3.29e-07 | 34 |
musculoskeletal system | 3.97e-07 | 167 |
telencephalon | 5.12e-07 | 34 |