FFCP PHASE1:Hg19::chr2:55277522..55277533,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |||
|TSSclassifier=strong | |||
|UniProt=F8W914 | |||
|association_with_transcript=-10bp_to_ENST00000402434_5end | |||
|coexpression_cluster_id=C1911 | |||
|description=CAGE_peak_6_at_RTN4_5end | |||
|id=chr2:55277522..55277533,- | |||
|ontology_enrichment_celltype=CL:0000055!2.52e-22!180;CL:0000222!4.24e-22!119;CL:0002371!4.26e-20!591;CL:0000144!1.63e-16!625;CL:0000057!9.54e-15!75;CL:0000680!5.50e-14!57;CL:0000056!5.50e-14!57;CL:0000355!5.50e-14!57;CL:0000192!1.43e-13!42;CL:0000514!1.43e-13!42;CL:0000183!7.16e-13!59;CL:0000187!1.30e-12!54;CL:0000359!6.59e-12!32;CL:0000220!1.15e-11!246;CL:0000548!1.51e-11!679;CL:0000004!1.51e-11!679;CL:0000255!1.51e-11!679;CL:0002321!3.10e-11!248;CL:0000012!7.40e-11!682;CL:0000393!1.34e-10!60;CL:0000211!1.34e-10!60;CL:0000048!1.05e-09!430;CL:0000723!2.55e-09!436;CL:0002139!6.50e-09!24;CL:0000115!9.67e-09!35;CL:0000213!2.65e-08!57;CL:0000215!2.65e-08!57;CL:0002078!3.69e-08!44;CL:0000034!3.75e-08!444;CL:0000071!2.95e-07!18;CL:0002546!2.95e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.43e-11;32!CL:0000192;2.08e-10;43!CL:0002139;6.79e-09;24!CL:0000115;3.76e-08;36!CL:0000071;3.24e-07;18!CL:0000187;3.55e-07;55!CL:0000136;6.55e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.74e-23,121;CL:0000057,7.92e-15,76;CL:0000680,1.51e-14,58;CL:0000056,1.51e-14,58;CL:0000355,1.51e-14,58;CL:0000192,3.63e-14,43;CL:0000514,3.63e-14,43;CL:0000187,3.68e-13,55;CL:0002321,6.45e-12,250;CL:0000359,6.58e-12,32;CL:0000393,4.24e-11,61;CL:0000211,4.24e-11,61;CL:0000048,3.29e-10,427;CL:0000723,8.27e-10,433;CL:0000115,3.22e-09,36;CL:0002139,6.50e-09,24;CL:0000213,1.04e-08,58;CL:0000215,1.04e-08,58;CL:0000034,1.33e-08,441;CL:0002078,1.34e-08,45;CL:0000071,2.95e-07,18;CL:0002546,2.95e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;2.08e-10;43!CL:0000355;1.17e-07;58!CL:0002546;3.24e-07;18!CL:0000222;3.98e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.06e-20!79;UBERON:0007798!1.06e-20!79;UBERON:0000055!2.98e-20!69;UBERON:0000467!1.65e-19!625;UBERON:0000468!2.27e-19!659;UBERON:0000480!4.55e-19!626;UBERON:0001981!1.60e-18!60;UBERON:0007500!1.60e-18!60;UBERON:0004537!1.60e-18!60;UBERON:0006965!1.60e-18!60;UBERON:0004872!2.42e-17!84;UBERON:0001637!2.44e-16!42;UBERON:0003509!2.44e-16!42;UBERON:0004572!2.44e-16!42;UBERON:0000486!2.33e-15!82;UBERON:0000914!3.80e-15!83;UBERON:0002329!3.80e-15!83;UBERON:0003077!3.80e-15!83;UBERON:0003059!3.80e-15!83;UBERON:0007282!3.80e-15!83;UBERON:0009618!3.80e-15!83;UBERON:0007285!3.80e-15!83;UBERON:0004535!6.97e-15!110;UBERON:0003914!2.39e-14!118;UBERON:0004573!3.94e-14!33;UBERON:0004571!3.94e-14!33;UBERON:0000923!6.40e-14!604;UBERON:0005291!6.40e-14!604;UBERON:0006598!6.40e-14!604;UBERON:0002532!6.40e-14!604;UBERON:0001009!7.05e-14!113;UBERON:0002050!8.84e-14!605;UBERON:0005423!8.84e-14!605;UBERON:0000119!1.12e-13!312;UBERON:0004111!2.33e-13!241;UBERON:0004290!3.07e-13!70;UBERON:0000483!3.30e-13!309;UBERON:0002204!4.84e-13!167;UBERON:0003081!5.66e-13!216;UBERON:0000922!6.50e-13!612;UBERON:0005256!3.37e-12!143;UBERON:0001134!6.12e-12!61;UBERON:0002036!6.12e-12!61;UBERON:0003082!6.12e-12!61;UBERON:0000475!1.57e-11!365;UBERON:0000926!1.67e-11!448;UBERON:0004120!1.67e-11!448;UBERON:0006603!1.67e-11!448;UBERON:0000477!1.84e-11!286;UBERON:0002385!3.75e-11!63;UBERON:0001015!3.75e-11!63;UBERON:0000383!3.75e-11!63;UBERON:0000490!8.28e-11!138;UBERON:0002100!3.66e-10!216;UBERON:0000025!1.64e-09!194;UBERON:0000947!1.29e-08!21;UBERON:0010191!1.29e-08!21;UBERON:0000487!1.54e-07!22;UBERON:0006914!1.86e-07!25;UBERON:0000479!1.98e-07!787;UBERON:0001986!2.95e-07!18;UBERON:0004638!2.95e-07!18;UBERON:0004852!2.95e-07!18;UBERON:0003102!4.32e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.58e-13;33!UBERON:0004571;4.58e-13;33!UBERON:0001637;2.52e-12;42!UBERON:0003509;2.52e-12;42!UBERON:0004572;2.52e-12;42!UBERON:0007500;7.16e-11;56!UBERON:0001981;7.16e-11;56!UBERON:0004537;7.16e-11;56!UBERON:0000055;2.31e-10;65!UBERON:0002049;8.98e-09;75!UBERON:0007798;8.98e-09;75!UBERON:0003914;1.17e-08;74!UBERON:0000947;1.27e-08;21!UBERON:0010191;1.27e-08;21!UBERON:0000487;1.64e-07;22!UBERON:0006914;1.78e-07;25!UBERON:0004638;3.24e-07;18!UBERON:0001986;3.24e-07;18!UBERON:0004852;3.24e-07;18 | |||
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| |||
|short_description=p6@RTN4 | |||
}} |
Revision as of 03:13, 21 January 2014
Short description: | p6@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RTN4_5end |
Coexpression cluster: | C1911_Smooth_mesenchymal_Fibroblast_leiomyoma_Preadipocyte_Adipocyte_osteoclastoma |
Association with transcript: | -10bp_to_ENST00000402434_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | F8W914 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.74e-23 | 121 |
fibroblast | 7.92e-15 | 76 |
muscle precursor cell | 1.51e-14 | 58 |
myoblast | 1.51e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.51e-14 | 58 |
smooth muscle cell | 3.63e-14 | 43 |
smooth muscle myoblast | 3.63e-14 | 43 |
muscle cell | 3.68e-13 | 55 |
embryonic cell | 6.45e-12 | 250 |
vascular associated smooth muscle cell | 6.58e-12 | 32 |
electrically responsive cell | 4.24e-11 | 61 |
electrically active cell | 4.24e-11 | 61 |
multi fate stem cell | 3.29e-10 | 427 |
somatic stem cell | 8.27e-10 | 433 |
endothelial cell | 3.22e-09 | 36 |
endothelial cell of vascular tree | 6.50e-09 | 24 |
lining cell | 1.04e-08 | 58 |
barrier cell | 1.04e-08 | 58 |
stem cell | 1.33e-08 | 441 |
meso-epithelial cell | 1.34e-08 | 45 |
blood vessel endothelial cell | 2.95e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.95e-07 | 18 |