FFCP PHASE1:Hg19::chr6:79944336..79944440,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9324 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12312 | |||
|TSSclassifier=strong | |||
|UniProt=Q15651 | |||
|association_with_transcript=0bp_to_ENST00000275036,ENST00000344726_5end | |||
|description=CAGE_peak_1_at_HMGN3_5end | |||
|id=chr6:79944336..79944440,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.64e-14!82;UBERON:0005743!1.35e-13!86;UBERON:0001049!2.24e-13!57;UBERON:0005068!2.24e-13!57;UBERON:0006241!2.24e-13!57;UBERON:0007135!2.24e-13!57;UBERON:0000073!1.23e-12!94;UBERON:0001016!1.23e-12!94;UBERON:0002616!2.04e-12!59;UBERON:0002780!2.90e-11!41;UBERON:0001890!2.90e-11!41;UBERON:0006240!2.90e-11!41;UBERON:0003080!5.14e-11!42;UBERON:0000955!1.04e-10!69;UBERON:0006238!1.04e-10!69;UBERON:0002020!2.10e-09!34;UBERON:0003528!2.10e-09!34;UBERON:0002346!5.49e-09!90;UBERON:0003075!5.85e-09!86;UBERON:0007284!5.85e-09!86;UBERON:0002791!1.50e-08!33;UBERON:0001893!2.12e-08!34;UBERON:0001869!4.02e-08!32;UBERON:0007023!9.74e-08!115;UBERON:0000153!1.15e-07!129;UBERON:0007811!1.15e-07!129;UBERON:0003056!2.07e-07!61;UBERON:0000033!3.29e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.30e-08;41!UBERON:0001890;1.30e-08;41!UBERON:0002791;3.86e-08;32!UBERON:0003528;4.63e-08;34!UBERON:0002020;4.63e-08;34!UBERON:0000073;9.98e-08;53!UBERON:0002616;9.98e-08;53!UBERON:0001869;1.30e-07;32!UBERON:0001893;3.11e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.79e-14,81;UBERON:0001049,1.33e-13,56;UBERON:0005068,1.33e-13,56;UBERON:0006241,1.33e-13,56;UBERON:0007135,1.33e-13,56;UBERON:0001016,2.22e-13,89;UBERON:0000073,2.11e-12,53;UBERON:0002616,2.11e-12,53;UBERON:0002780,2.90e-11,41;UBERON:0001890,2.90e-11,41;UBERON:0003080,2.90e-11,41;UBERON:0006240,2.90e-11,41;UBERON:0000955,7.42e-11,68;UBERON:0006238,7.42e-11,68;UBERON:0011216,7.72e-11,223;UBERON:0002346,8.19e-10,86;UBERON:0003075,8.22e-10,82;UBERON:0007284,8.22e-10,82;UBERON:0003528,2.10e-09,34;UBERON:0002020,2.10e-09,34;UBERON:0002791,8.78e-09,32;UBERON:0001893,2.12e-08,34;UBERON:0001869,4.02e-08,32;UBERON:0003056,9.07e-08,61;UBERON:0007023,1.98e-07,114;UBERON:0004121,9.58e-07,171;UBERON:0000924,9.58e-07,171;UBERON:0006601,9.58e-07,171 | |||
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| |||
|short_description=p1@HMGN3 | |||
}} |
Revision as of 12:47, 22 January 2014
Short description: | p1@HMGN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000275036, ENST00000344726_5end |
EntrezGene: | HMGN3 |
HGNC: | 12312 |
UniProt: | Q15651 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.79e-14 | 81 |
neural tube | 1.33e-13 | 56 |
neural rod | 1.33e-13 | 56 |
future spinal cord | 1.33e-13 | 56 |
neural keel | 1.33e-13 | 56 |
nervous system | 2.22e-13 | 89 |
regional part of nervous system | 2.11e-12 | 53 |
regional part of brain | 2.11e-12 | 53 |
regional part of forebrain | 2.90e-11 | 41 |
forebrain | 2.90e-11 | 41 |
anterior neural tube | 2.90e-11 | 41 |
future forebrain | 2.90e-11 | 41 |
brain | 7.42e-11 | 68 |
future brain | 7.42e-11 | 68 |
organ system subdivision | 7.72e-11 | 223 |
neurectoderm | 8.19e-10 | 86 |
neural plate | 8.22e-10 | 82 |
presumptive neural plate | 8.22e-10 | 82 |
brain grey matter | 2.10e-09 | 34 |
gray matter | 2.10e-09 | 34 |
regional part of telencephalon | 8.78e-09 | 32 |
telencephalon | 2.12e-08 | 34 |
cerebral hemisphere | 4.02e-08 | 32 |
pre-chordal neural plate | 9.07e-08 | 61 |
adult organism | 1.98e-07 | 114 |
ectoderm-derived structure | 9.58e-07 | 171 |
ectoderm | 9.58e-07 | 171 |
presumptive ectoderm | 9.58e-07 | 171 |