FFCP PHASE1:Hg19::chr12:54795616..54795632,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:54795616..54795632,- to FFCP PHASE1:Hg19::chr12:54795616..54795632,-: NSchange) |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:54795616..54795632,- | |||
|description=CAGE_peak_at_chr12:54795616..54795632,- | |||
|id=chr12:54795616..54795632,- | |||
|ontology_enrichment_celltype=CL:0000048!3.69e-19!430;CL:0002371!7.52e-19!591;CL:0000723!7.81e-19!436;CL:0000034!9.38e-18!444;CL:0000144!1.29e-17!625;CL:0000222!5.71e-14!119;CL:0000548!1.26e-13!679;CL:0000004!1.26e-13!679;CL:0000255!1.26e-13!679;CL:0000055!3.79e-13!180;CL:0000012!4.25e-13!682;CL:0002057!3.22e-11!42;CL:0000057!1.46e-10!75;CL:0000860!1.54e-10!45;CL:0002320!4.99e-10!365;CL:0000680!9.22e-10!57;CL:0000056!9.22e-10!57;CL:0000355!9.22e-10!57;CL:0000134!1.42e-09!358;CL:0000183!2.61e-09!59;CL:0000115!7.56e-09!35;CL:0000003!9.70e-09!722;CL:0000187!1.14e-08!54;CL:0002139!2.53e-08!24;CL:0002194!1.18e-07!63;CL:0000576!1.18e-07!63;CL:0000040!1.18e-07!63;CL:0000559!1.18e-07!63;CL:0002078!1.24e-07!44;CL:0000393!1.80e-07!60;CL:0000211!1.80e-07!60;CL:0000071!4.12e-07!18;CL:0002546!4.12e-07!18;CL:0002009!5.34e-07!65;CL:0000219!7.89e-07!390;CL:0000192!9.80e-07!42;CL:0000514!9.80e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.40e-23;33!CL:0002057;2.40e-23;33!CL:0000473;1.98e-16;39!CL:0000234;1.98e-16;39!CL:0000576;2.01e-10;48!CL:0000115;4.20e-10;36!CL:1000413;2.13e-09;9!CL:0002139;2.43e-08;24!CL:0000071;8.34e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.76e-18,42;CL:0002057,6.76e-18,42;CL:0000473,8.10e-15,48;CL:0000234,8.10e-15,48;CL:0000048,2.78e-12,427;CL:0000222,5.32e-12,121;CL:0000723,8.23e-12,433;CL:0002194,1.27e-11,59;CL:0000576,1.27e-11,59;CL:0000040,1.27e-11,59;CL:0000559,1.27e-11,59;CL:0000034,3.32e-11,441;CL:0002009,4.88e-11,61;CL:0000115,1.34e-10,36;CL:0000839,9.75e-10,66;CL:0000557,1.68e-09,67;CL:1000413,1.88e-09,9;CL:0000766,1.98e-08,72;CL:0000680,3.62e-08,58;CL:0000056,3.62e-08,58;CL:0000355,3.62e-08,58;CL:0002139,4.18e-08,24;CL:0002078,1.26e-07,45;CL:0000187,5.85e-07,55;CL:0000192,7.32e-07,43;CL:0000514,7.32e-07,43;CL:0000071,8.55e-07,18;CL:0002546,8.55e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;6.75e-15;42!CL:0002546;8.34e-07;18 | |||
|ontology_enrichment_disease=DOID:2394!9.10e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.66e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.11e-11,14;DOID:0060084,9.98e-07,3;DOID:127,9.98e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003081!5.19e-15!216;UBERON:0000055!2.19e-14!69;UBERON:0002049!3.66e-14!79;UBERON:0007798!3.66e-14!79;UBERON:0004872!5.85e-14!84;UBERON:0001981!1.64e-13!60;UBERON:0007500!1.64e-13!60;UBERON:0004537!1.64e-13!60;UBERON:0006965!1.64e-13!60;UBERON:0002204!9.41e-12!167;UBERON:0004535!1.76e-11!110;UBERON:0001637!2.22e-11!42;UBERON:0003509!2.22e-11!42;UBERON:0004572!2.22e-11!42;UBERON:0001009!6.42e-11!113;UBERON:0002384!2.05e-09!375;UBERON:0004290!2.31e-09!70;UBERON:0000914!2.80e-09!83;UBERON:0002329!2.80e-09!83;UBERON:0003077!2.80e-09!83;UBERON:0003059!2.80e-09!83;UBERON:0007282!2.80e-09!83;UBERON:0009618!2.80e-09!83;UBERON:0007285!2.80e-09!83;UBERON:0003914!9.80e-09!118;UBERON:0004573!9.83e-09!33;UBERON:0004571!9.83e-09!33;UBERON:0000926!1.08e-08!448;UBERON:0004120!1.08e-08!448;UBERON:0006603!1.08e-08!448;UBERON:0000486!1.73e-08!82;UBERON:0002385!2.11e-08!63;UBERON:0001015!2.11e-08!63;UBERON:0000383!2.11e-08!63;UBERON:0001134!3.84e-08!61;UBERON:0002036!3.84e-08!61;UBERON:0003082!3.84e-08!61;UBERON:0000947!1.85e-07!21;UBERON:0010191!1.85e-07!21;UBERON:0005256!3.37e-07!143;UBERON:0001986!4.12e-07!18;UBERON:0004638!4.12e-07!18;UBERON:0004852!4.12e-07!18;UBERON:0000490!8.97e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0003513;1.68e-09;7!UBERON:0001637;1.71e-09;42!UBERON:0003509;1.71e-09;42!UBERON:0004572;1.71e-09;42!UBERON:0003915;2.13e-09;9!UBERON:0004700;2.13e-09;9!UBERON:0001917;2.13e-09;9!UBERON:0004573;1.31e-07;33!UBERON:0004571;1.31e-07;33!UBERON:0000055;3.29e-07;65!UBERON:0007500;5.72e-07;56!UBERON:0001981;5.72e-07;56!UBERON:0004537;5.72e-07;56!UBERON:0004638;8.34e-07;18!UBERON:0001986;8.34e-07;18!UBERON:0004852;8.34e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.97e-20,315;UBERON:0004120,1.97e-20,315;UBERON:0006603,1.97e-20,315;UBERON:0003081,1.26e-17,203;UBERON:0002204,2.17e-14,167;UBERON:0000055,3.08e-12,68;UBERON:0001637,3.99e-11,42;UBERON:0003509,3.99e-11,42;UBERON:0004572,3.99e-11,42;UBERON:0002049,1.13e-10,78;UBERON:0007798,1.13e-10,78;UBERON:0007500,1.73e-10,59;UBERON:0001981,1.73e-10,59;UBERON:0004537,1.73e-10,59;UBERON:0006965,1.73e-10,59;UBERON:0002405,2.63e-10,93;UBERON:0002371,2.64e-10,76;UBERON:0004872,1.01e-09,83;UBERON:0003915,1.88e-09,9;UBERON:0004700,1.88e-09,9;UBERON:0001917,1.88e-09,9;UBERON:0003513,2.10e-09,7;UBERON:0001474,4.71e-09,82;UBERON:0007503,4.38e-08,78;UBERON:0004573,7.59e-08,33;UBERON:0004571,7.59e-08,33;UBERON:0002193,8.04e-08,108;UBERON:0004765,1.15e-07,90;UBERON:0004535,1.20e-07,109;UBERON:0001134,2.58e-07,62;UBERON:0002036,2.58e-07,62;UBERON:0003082,2.58e-07,62;UBERON:0001009,3.02e-07,112;UBERON:0002385,6.21e-07,64;UBERON:0001015,6.21e-07,64;UBERON:0000383,6.21e-07,64;UBERON:0001434,6.68e-07,100;UBERON:0004638,8.55e-07,18;UBERON:0001986,8.55e-07,18;UBERON:0004852,8.55e-07,18 | |||
|phase1_expression=0.908391896352783,3.21150785836475,0.563817616383885,0,0.446961094427288,0.872338524100369,5.06599756336621,0,0,0,0.697801167972428,0,0,0.247532705920093,0.331397375727916,0.672325146451775,0,0.730310090387373,1.46379839637152,0,0.816002764977012,0,0,0.273748850145768,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.217010870715852,0.223915474239924,0,0,1.45398238779565,2.26725566213286,1.21292030593908,2.32429036905685,1.23350366406548,1.85823822537062,2.58923153089935,2.0492856522328,0.47296445977717,0.689491361473237,3.22742341791913,2.70852973188684,2.63539275359647,2.18324920046277,1.12361742222542,4.59125838556354,0.320929027076094,0.639337125799041,1.64925650093358,2.19410023383795,1.27867425159808,2.61188314765726,1.13477044938228,5.60540024096017,0.502497330513487,1.0429658368404,1.52032191293582,2.42159801053347,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.722878304769133,0,0.724232594804119,0,0,0.0945348171640679,0.221729397462564,0.351339142772504,0.0654895377488563,0,0.370784442784429,0,0,0.398873881556595,0,0,0,0.39752481473341,0,1.73570250803797,1.13061588384802,1.25849830862972,8.52865930014209,1.25396979922086,0.516833518338658,0,1.00416183829401,2.81980521976403,0.760272105718513,0.976248230192678,1.47065232138347,12.1521292182264,0.535798369704479,0.22452937262617,0.337834441449967,0,0.949265659568129,1.09921046358244,0,0,0,0,0.379891534993739,0.132409180813219,0.860509862246441,1.06400514659507,0.560677600142307,0,1.97334038733728,0,0.808264032418128,1.30769522490767,0.454072282934794,0,0.234321431833797,0.312160076830321,0,0.747243402759005,0.469737994575059,0.323745888736263,0.98315564691574,0.408308342509787,0.491337269247072,0.723280468230358,0,0.989067717114227,0,2.87447256726495,0.336672227908132,0.625592599359821,0.277064115484183,0,1.22595118319608,0.150238058906597,0.340296549480063,1.25572744982203,0.213557388818567,0.635795703478686,1.80054657650641,0.412210116953756,0.257640540045629,0.18611685633159,0.337552664482532,0.487185025805993,0.757301322732344,0.184099797284599,0.484938170456436,1.77504796258307,1.20902517873168,0,0,0.272746120590835,0.286804595389004,0.121973706129595,0,0,0.207322110030741,0,0,0,0.643240938192885,4.14404764057442,0,0,0.236613600079688,0.337169380156203,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0.185176890317059,0,3.11980435583874,1.44331342025273,0,0,1.01056513432752,0.462985512576611,1.33177906564219,0.790204397959275,0,0,0.234004265139238,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0.308482478109971,0,0,0.560655421726804,0.87192013766656,0.2933531432838,0.129271715757778,3.57656445851882,0.845302752556,0.797814349754612,2.08014873822732,0.514414748524284,0,1.3321108950805,0.428933980974443,0,0,0.65147236858747,0.355391948742546,0.791951872933429,0.301439377059586,0.871533458600294,0.799783929456456,0,0.502257091432126,0,0.958499421966331,1.14861935834114,0,1.59259437334337,1.43833425785268,0.358121926479791,0,0.197030760201927,0,0,0,0,0.773288812777695,0,0,0.749007023947182,0,0,0,0.500170521059677,0,0.415941723061614,1.60586089917446,0.315404830067869,0.585707074963566,0.300946099727719,2.27407504055985,1.03473071292505,0,0.368738337083406,0.260650843404249,0.587403472388222,0.343143423810856,0,0.862856803274467,0.320182673410333,0,0,1.20956117331872,0.496215615637554,0.460385919864187,1.12264037773229,0.512556597022804,0.511707249066704,0.64341568457443,0,1.69630663182921,0.532685175939381,0.0821271560138091,2.07701771673448,1.51073491997947,0.120859449591622,1.20303882181971,0,0.574072240823034,0.910455840033585,0.262248829918848,0,0.231046011313244,0,0,0,4.54933536283586,2.2112181685947,0.431831832204279,6.16909010761157,0.270946437543853,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.309123034943167,0.183138929636687,0,0,0.650060246036521,1.6068392984416,0.096670718292122,1.54048617114644,1.99554777143968,0.964856007391714,0.537101224341368,1.0151168573996,0.852266274161009,0.267096106940212,0.330569830721956,0,0.127612712494584,0.10115778085555,0.464845549297286,3.1481234683064,0.6970372701606,1.54016790088044,0.532306030317022,0.869932992075073,1.29726953372744,0.429374660225974,0,1.2655176988749,0.571890581771475,1.02359116524534,0,0,3.92474320099615,0.179872457583315,0,0.824686816419805,0.404364963146632,0,0,0,1.46228093778771,1.05650146756755,0,1.41405431953713,0,0,3.3171948762061,3.5076070820301,1.15755106853338,0,0.405820753925408,2.16876448669825,1.40847801266121,0,0.196498082026242,0.35667105148125,1.06428319221179,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,1.6847147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| ||
|short_description=p@chr12:54795616..54795632,- | |||
}} | }} |
Latest revision as of 10:03, 24 July 2015
Short description: | p@chr12:54795616..54795632, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54795616..54795632, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.76e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.76e-18 | 42 |
defensive cell | 8.10e-15 | 48 |
phagocyte | 8.10e-15 | 48 |
multi fate stem cell | 2.78e-12 | 427 |
mesodermal cell | 5.32e-12 | 121 |
somatic stem cell | 8.23e-12 | 433 |
monopoietic cell | 1.27e-11 | 59 |
monocyte | 1.27e-11 | 59 |
monoblast | 1.27e-11 | 59 |
promonocyte | 1.27e-11 | 59 |
stem cell | 3.32e-11 | 441 |
macrophage dendritic cell progenitor | 4.88e-11 | 61 |
endothelial cell | 1.34e-10 | 36 |
myeloid lineage restricted progenitor cell | 9.75e-10 | 66 |
granulocyte monocyte progenitor cell | 1.68e-09 | 67 |
endothelial cell of artery | 1.88e-09 | 9 |
myeloid leukocyte | 1.98e-08 | 72 |
muscle precursor cell | 3.62e-08 | 58 |
myoblast | 3.62e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.62e-08 | 58 |
endothelial cell of vascular tree | 4.18e-08 | 24 |
meso-epithelial cell | 1.26e-07 | 45 |
muscle cell | 5.85e-07 | 55 |
smooth muscle cell | 7.32e-07 | 43 |
smooth muscle myoblast | 7.32e-07 | 43 |
blood vessel endothelial cell | 8.55e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.55e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.11e-11 | 14 |
cell type benign neoplasm | 9.98e-07 | 3 |
leiomyoma | 9.98e-07 | 3 |