FFCP PHASE1:Hg19::chr2:45166478..45166502,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:45166478..45166502,- to FFCP PHASE1:Hg19::chr2:45166478..45166502,-: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-140bp_to_ENST00000437916_5end | |||
|cluster_id=chr2:45166478..45166502,- | |||
|coexpression_cluster_id=C1022 | |||
|description=CAGE_peak_3_at_ENST00000437916_5end | |||
|id=chr2:45166478..45166502,- | |||
|ontology_enrichment_celltype=CL:0000064!9.65e-19!3;CL:0005012!9.65e-19!3;CL:0000067!9.65e-19!3;CL:0002304!9.65e-19!3;CL:0002322!1.96e-18!5;CL:0002586!7.71e-18!3;CL:0000147!2.90e-14!14;CL:0000149!1.63e-13!4;CL:0000075!7.77e-10!27;CL:0000080!5.79e-09!6;CL:0000325!2.88e-08!39;CL:0000710!3.42e-07!20;CL:0000342!4.78e-07!1;CL:0002565!4.78e-07!1;CL:0000306!8.51e-07!4;CL:0002222!8.51e-07!4;CL:0002224!8.51e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000064;5.35e-75;3!CL:0000067;5.35e-75;3!CL:0005012;5.35e-75;3!CL:0002304;5.35e-75;3!CL:0000075;3.12e-15;27!CL:0000710;5.81e-12;20!CL:0000306;1.69e-07;4!CL:0002222;1.69e-07;4!CL:0002224;1.69e-07;4!CL:0002077;2.12e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,4.72e-75,3;CL:0000067,4.72e-75,3;CL:0005012,4.72e-75,3;CL:0002304,4.72e-75,3;CL:0000075,3.06e-15,27;CL:0000710,5.70e-12,20;CL:0000306,1.69e-07,4;CL:0002222,1.69e-07,4;CL:0002224,1.69e-07,4;CL:0002077,2.65e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.24e-09;3 | |||
|ontology_enrichment_disease=DOID:6193!3.17e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:6193;9.79e-26;1!DOID:3350;1.37e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.26e-25,1;DOID:3350,1.55e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0007625!1.41e-41!11;UBERON:0000970!1.70e-39!20;UBERON:0002104!1.68e-37!21;UBERON:0000019!6.40e-35!19;UBERON:0000047!6.40e-35!19;UBERON:0004088!6.40e-35!19;UBERON:0003072!6.40e-35!19;UBERON:0003071!6.40e-35!19;UBERON:0004128!6.40e-35!19;UBERON:0000020!4.98e-34!23;UBERON:0001032!1.65e-32!24;UBERON:0004456!1.65e-32!24;UBERON:0001456!2.16e-31!21;UBERON:0000966!1.84e-28!5;UBERON:0005388!1.84e-28!5;UBERON:0001802!1.84e-28!5;UBERON:0000488!4.63e-24!4;UBERON:0005085!3.87e-22!29;UBERON:0001778!9.65e-19!3;UBERON:0001775!9.65e-19!3;UBERON:0001781!7.71e-18!3;UBERON:0001782!7.71e-18!3;UBERON:0005424!7.71e-18!3;UBERON:0003056!2.09e-17!61;UBERON:0002203!4.27e-16!6;UBERON:0001768!4.27e-16!6;UBERON:0001801!1.05e-14!14;UBERON:0002346!2.57e-14!90;UBERON:0003075!2.67e-13!86;UBERON:0007284!2.67e-13!86;UBERON:0001444!1.59e-12!48;UBERON:0000033!2.37e-09!123;UBERON:0002200!8.12e-09!11;UBERON:0006876!8.12e-09!11;UBERON:0000153!9.20e-09!129;UBERON:0007811!9.20e-09!129;UBERON:0000063!1.22e-08!97;UBERON:0000924!1.84e-08!173;UBERON:0006601!1.84e-08!173;UBERON:0004121!9.67e-08!169;UBERON:0002506!4.78e-07!1;UBERON:0001769!4.78e-07!1;UBERON:0010077!8.51e-07!4;UBERON:0005389!8.51e-07!4;UBERON:0000484!8.51e-07!4;UBERON:0002546!8.51e-07!4;UBERON:0000965!8.51e-07!4;UBERON:0001803!8.51e-07!4;UBERON:0003073!8.51e-07!4;UBERON:0005426!8.51e-07!4;UBERON:0001882!8.98e-07!1;UBERON:0005403!8.98e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;5.35e-75;3!UBERON:0001775;5.35e-75;3!UBERON:0000488;1.62e-56;4!UBERON:0000970;1.47e-44;20!UBERON:0002104;1.86e-42;21!UBERON:0000020;8.47e-39;23!UBERON:0002203;5.22e-38;6!UBERON:0001768;5.22e-38;6!UBERON:0002200;5.22e-38;6!UBERON:0001032;3.38e-37;24!UBERON:0004456;3.38e-37;24!UBERON:0007625;1.56e-36;11!UBERON:0000019;6.62e-33;19!UBERON:0000047;6.62e-33;19!UBERON:0004088;6.62e-33;19!UBERON:0010230;6.62e-33;19!UBERON:0001456;8.12e-30;21!UBERON:0001801;7.55e-29;14!UBERON:0006876;3.92e-21;11!UBERON:0010371;3.36e-13;31!UBERON:0002369;1.67e-09;3!UBERON:0001235;1.67e-09;3!UBERON:0006858;1.67e-09;3!UBERON:0001444;4.67e-09;48!UBERON:0000033;1.23e-07;50!UBERON:0010077;1.69e-07;4!UBERON:0005389;1.69e-07;4!UBERON:0000484;1.69e-07;4!UBERON:0000965;1.69e-07;4!UBERON:0001803;1.69e-07;4!UBERON:0000153;8.21e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,4.72e-75,3;UBERON:0001775,4.72e-75,3;UBERON:0000488,1.48e-56,4;UBERON:0000970,1.86e-42,21;UBERON:0002104,1.86e-42,21;UBERON:0002203,4.90e-38,6;UBERON:0001768,4.90e-38,6;UBERON:0002200,4.90e-38,6;UBERON:0000020,3.38e-37,24;UBERON:0001032,3.38e-37,24;UBERON:0004456,3.38e-37,24;UBERON:0007625,1.49e-36,11;UBERON:0000019,2.77e-31,20;UBERON:0000047,2.77e-31,20;UBERON:0010312,2.77e-31,20;UBERON:0004088,2.77e-31,20;UBERON:0010230,2.77e-31,20;UBERON:0003072,2.77e-31,20;UBERON:0004128,2.77e-31,20;UBERON:0003071,2.77e-31,20;UBERON:0001801,7.28e-29,14;UBERON:0001456,1.76e-28,22;UBERON:0006876,3.79e-21,11;UBERON:0005085,2.48e-20,31;UBERON:0001444,5.58e-13,49;UBERON:0000033,2.17e-11,56;UBERON:0000153,2.61e-10,62;UBERON:0007811,2.61e-10,62;UBERON:0003056,2.61e-10,61;UBERON:0002369,1.54e-09,3;UBERON:0001235,1.54e-09,3;UBERON:0006858,1.54e-09,3;UBERON:0003075,9.54e-08,82;UBERON:0007284,9.54e-08,82;UBERON:0010077,1.69e-07,4;UBERON:0005389,1.69e-07,4;UBERON:0000484,1.69e-07,4;UBERON:0002546,1.69e-07,4;UBERON:0000965,1.69e-07,4;UBERON:0001803,1.69e-07,4;UBERON:0003073,1.69e-07,4;UBERON:0005426,1.69e-07,4;UBERON:0002346,2.13e-07,86;UBERON:0010314,8.25e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38848457835187,3.54767035940102,4.0404001418838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0,0.932949495138334,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,2.31860809950154,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45632626099416,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.494255755786011,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,1.0319161948297,0,0,0,0,0,1.12990370390266,0,0,0.0633107959558787,0,0.320635281006135,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35939757630285,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38848457835187,3.54767035940102,4.0404001418838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0,0.932949495138334,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,2.31860809950154,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45632626099416,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.494255755786011,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,1.0319161948297,0,0,0,0,0,1.12990370390266,0,0,0.0633107959558787,0,0.320635281006135,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35939757630285,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@ENST00000437916 | |||
}} | }} |
Latest revision as of 10:23, 29 July 2015
Short description: | p3@ENST00000437916 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000437916_5end |
Coexpression cluster: | C1022_Ciliary_Lens_Astrocyte_Neural_Iris_retina_Hair |
Association with transcript: | -140bp_to_ENST00000437916_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 4.72e-75 | 3 |
ciliated epithelial cell | 4.72e-75 | 3 |
multi-ciliated epithelial cell | 4.72e-75 | 3 |
non-pigmented ciliary epithelial cell | 4.72e-75 | 3 |
columnar/cuboidal epithelial cell | 3.06e-15 | 27 |
neurecto-epithelial cell | 5.70e-12 | 20 |
crystallin accumulating cell | 1.69e-07 | 4 |
vertebrate lens cell | 1.69e-07 | 4 |
lens epithelial cell | 1.69e-07 | 4 |
ecto-epithelial cell | 2.65e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.26e-25 | 1 |
mesenchymal cell neoplasm | 1.55e-13 | 2 |