FFCP PHASE1:Hg19::chr10:105791560..105791576,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:105791560..105791576,-
|short_description=p7@COL17A1
|description=CAGE_peak_7_at_COL17A1_5end
|association_with_transcript=473bp_to_AF136185_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1308 | |EntrezGene=1308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2194 | |HGNC=2194 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=473bp_to_AF136185_5end | |||
|cluster_id=chr10:105791560..105791576,- | |||
|coexpression_cluster_id=C640 | |||
|description=CAGE_peak_7_at_COL17A1_5end | |||
|id=chr10:105791560..105791576,- | |||
|ontology_enrichment_celltype=CL:0002076!6.38e-23!43;CL:0002251!1.19e-19!21;CL:0000066!1.73e-18!254;CL:0000223!1.24e-17!59;CL:0002159!4.81e-13!13;CL:0000622!1.22e-11!5;CL:0000154!1.30e-09!6;CL:0002077!2.32e-08!33;CL:0002621!5.91e-08!3;CL:0002541!6.47e-08!3;CL:0002623!9.06e-08!3;CL:0000349!9.91e-08!3;CL:0002577!9.91e-08!3;CL:0002166!1.76e-07!3;CL:0002368!1.80e-07!13;CL:0000076!8.22e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;8.38e-20;42!CL:0000349;2.57e-19;19!CL:0002159;1.18e-15;14!CL:0002621;6.77e-15;3!CL:0002251;8.09e-14;20!CL:0000244;1.05e-11;4!CL:0000731;1.05e-11;4!CL:0002536;2.63e-10;2!CL:0000575;2.63e-10;2!CL:0002537;1.28e-09;5!CL:0000622;2.20e-09;5!CL:0002368;1.34e-08;13!CL:0000154;6.91e-08;6!CL:0000240;8.92e-08;6!CL:0000311;8.92e-08;6!CL:0000079;8.92e-08;6!CL:0000237;8.92e-08;6!CL:0002541;9.89e-08;3!CL:0002623;1.58e-07;3!CL:0002577;2.43e-07;3!CL:0002231;2.55e-07;3!CL:0002166;6.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.34e-21,42;CL:0000349,2.61e-19,19;CL:0002159,8.72e-16,14;CL:0002621,4.75e-15,3;CL:0000223,1.00e-14,58;CL:0000066,3.34e-14,253;CL:0002251,6.21e-14,20;CL:0000244,1.13e-11,4;CL:0000731,1.13e-11,4;CL:0000575,1.98e-10,2;CL:0002536,3.04e-10,2;CL:0002537,1.34e-09,5;CL:0000622,2.17e-09,5;CL:0002368,1.65e-08,13;CL:0000154,6.83e-08,6;CL:0000240,7.68e-08,6;CL:0000311,7.68e-08,6;CL:0000079,7.68e-08,6;CL:0000237,7.68e-08,6;CL:0000036,7.68e-08,6;CL:0000357,7.68e-08,6;CL:0000114,7.68e-08,6;CL:0002541,9.74e-08,3;CL:0002077,1.18e-07,34;CL:0002623,1.69e-07,3;CL:0002577,2.18e-07,3;CL:0002231,2.25e-07,3;CL:0002166,5.06e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;5.47e-09;58!CL:0000357;8.92e-08;6!CL:0000114;8.92e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!6.87e-16!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.97e-22!14;UBERON:0000158!5.97e-22!14;UBERON:0003124!1.39e-15!7;UBERON:0004119!4.95e-13!169;UBERON:0000925!4.95e-13!169;UBERON:0006595!4.95e-13!169;UBERON:0000166!1.67e-12!21;UBERON:0000478!1.84e-11!24;UBERON:0000161!1.74e-10!35;UBERON:0000165!2.39e-10!28;UBERON:0000930!2.39e-10!28;UBERON:0003729!3.22e-10!5;UBERON:0004923!4.85e-10!57;UBERON:0001987!2.36e-09!4;UBERON:0004340!2.36e-09!4;UBERON:0001004!1.19e-08!72;UBERON:0000305!1.33e-08!7;UBERON:0003343!3.32e-08!4;UBERON:0004785!3.32e-08!4;UBERON:0001949!5.91e-08!3;UBERON:0000476!6.47e-08!3;UBERON:0000920!6.47e-08!3;UBERON:0000365!1.17e-07!5;UBERON:0004871!1.87e-07!8;UBERON:0003102!4.37e-07!95;UBERON:0001723!8.83e-07!3;UBERON:0001033!8.83e-07!3;UBERON:0010056!8.83e-07!3;UBERON:0001444!9.15e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.58e-23;10!UBERON:0000158;2.58e-23;10!UBERON:0000305;2.83e-17;7!UBERON:0000478;5.97e-15;24!UBERON:0001949;6.77e-15;3!UBERON:0000486;5.45e-14;12!UBERON:0000165;1.63e-09;28!UBERON:0000365;1.88e-09;5!UBERON:0003729;9.23e-09;13!UBERON:0000161;1.77e-08;19!UBERON:0000166;1.77e-08;19!UBERON:0005910;6.07e-08;6!UBERON:0004923;6.89e-08;55!UBERON:0003124;9.89e-08;3!UBERON:0000920;9.89e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.66e-27,14;UBERON:0000158,8.66e-27,14;UBERON:0000305,3.30e-17,7;UBERON:0001949,4.75e-15,3;UBERON:0004871,5.02e-15,8;UBERON:0000478,6.03e-15,24;UBERON:0003124,1.50e-11,7;UBERON:0003102,2.27e-11,99;UBERON:0004923,3.20e-11,66;UBERON:0000166,1.21e-09,22;UBERON:0000033,1.44e-09,56;UBERON:0000365,2.00e-09,5;UBERON:0000165,3.50e-09,29;UBERON:0000930,3.50e-09,29;UBERON:0000161,4.05e-09,36;UBERON:0003729,6.86e-09,13;UBERON:0000153,2.05e-08,62;UBERON:0007811,2.05e-08,62;UBERON:0004119,4.78e-08,160;UBERON:0000925,4.78e-08,160;UBERON:0006595,4.78e-08,160;UBERON:0005910,6.37e-08,6;UBERON:0001444,9.37e-08,49;UBERON:0000920,9.74e-08,3;UBERON:0004121,3.38e-07,171;UBERON:0000924,3.38e-07,171;UBERON:0006601,3.38e-07,171 | |||
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| ||
|short_description=p7@COL17A1 | |||
}} | }} |
Latest revision as of 04:47, 16 September 2015
Short description: | p7@COL17A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL17A1_5end |
Coexpression cluster: | C640_amniotic_salivary_chorionic_Keratinocyte_Urothelial_Prostate_Mammary |
Association with transcript: | 473bp_to_AF136185_5end |
EntrezGene: | COL17A1 |
HGNC: | 2194 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.34e-21 | 42 |
extraembryonic cell | 2.61e-19 | 19 |
general ecto-epithelial cell | 8.72e-16 | 14 |
gingival epithelial cell | 4.75e-15 | 3 |
endodermal cell | 1.00e-14 | 58 |
epithelial cell | 3.34e-14 | 253 |
epithelial cell of alimentary canal | 6.21e-14 | 20 |
transitional epithelial cell | 1.13e-11 | 4 |
urothelial cell | 1.13e-11 | 4 |
corneal epithelial cell | 1.98e-10 | 2 |
amniotic epithelial cell | 3.04e-10 | 2 |
amnion mesenchymal stem cell | 1.34e-09 | 5 |
acinar cell | 2.17e-09 | 5 |
respiratory epithelial cell | 1.65e-08 | 13 |
protein secreting cell | 6.83e-08 | 6 |
stratified squamous epithelial cell | 7.68e-08 | 6 |
keratin accumulating cell | 7.68e-08 | 6 |
stratified epithelial cell | 7.68e-08 | 6 |
keratinizing barrier epithelial cell | 7.68e-08 | 6 |
epithelial fate stem cell | 7.68e-08 | 6 |
stratified epithelial stem cell | 7.68e-08 | 6 |
surface ectodermal cell | 7.68e-08 | 6 |
chorionic membrane mesenchymal stem cell | 9.74e-08 | 3 |
ecto-epithelial cell | 1.18e-07 | 34 |
acinar cell of salivary gland | 1.69e-07 | 3 |
placental epithelial cell | 2.18e-07 | 3 |
epithelial cell of prostate | 2.25e-07 | 3 |
epithelial cell of Malassez | 5.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.66e-27 | 14 |
membranous layer | 8.66e-27 | 14 |
amnion | 3.30e-17 | 7 |
gingival epithelium | 4.75e-15 | 3 |
somatic layer of lateral plate mesoderm | 5.02e-15 | 8 |
extraembryonic structure | 6.03e-15 | 24 |
chorion | 1.50e-11 | 7 |
surface structure | 2.27e-11 | 99 |
organ component layer | 3.20e-11 | 66 |
oral opening | 1.21e-09 | 22 |
head | 1.44e-09 | 56 |
urothelium | 2.00e-09 | 5 |
mouth | 3.50e-09 | 29 |
stomodeum | 3.50e-09 | 29 |
orifice | 4.05e-09 | 36 |
mouth mucosa | 6.86e-09 | 13 |
anterior region of body | 2.05e-08 | 62 |
craniocervical region | 2.05e-08 | 62 |
endoderm-derived structure | 4.78e-08 | 160 |
endoderm | 4.78e-08 | 160 |
presumptive endoderm | 4.78e-08 | 160 |
transitional epithelium | 6.37e-08 | 6 |
subdivision of head | 9.37e-08 | 49 |
egg chorion | 9.74e-08 | 3 |
ectoderm-derived structure | 3.38e-07 | 171 |
ectoderm | 3.38e-07 | 171 |
presumptive ectoderm | 3.38e-07 | 171 |