FFCP PHASE1:Hg19::chr17:5323492..5323527,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:5323492..5323527,+ to FFCP PHASE1:Hg19::chr17:5323492..5323527,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84268 | |EntrezGene=84268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28641 | |HGNC=28641 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000327154_5end | |||
|cluster_id=chr17:5323492..5323527,+ | |||
|description=CAGE_peak_1_at_RPAIN_5end | |||
|id=chr17:5323492..5323527,+ | |||
|ontology_enrichment_celltype=CL:0000838!8.25e-09!52;CL:0000542!1.41e-08!53;CL:0000051!1.41e-08!53 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.25e-09,52;CL:0000542,1.41e-08,53;CL:0000051,1.41e-08,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019=DOID:171;6.08e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.09e-10,235;DOID:14566,1.34e-10,239;DOID:0050687,2.92e-09,143;DOID:171,5.96e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.15e-17!94;UBERON:0001016!4.15e-17!94;UBERON:0005743!1.88e-14!86;UBERON:0001017!1.80e-13!82;UBERON:0002780!2.34e-10!41;UBERON:0001890!2.34e-10!41;UBERON:0006240!2.34e-10!41;UBERON:0001049!2.66e-10!57;UBERON:0005068!2.66e-10!57;UBERON:0006241!2.66e-10!57;UBERON:0007135!2.66e-10!57;UBERON:0002346!3.44e-10!90;UBERON:0003080!7.16e-10!42;UBERON:0000955!1.67e-09!69;UBERON:0006238!1.67e-09!69;UBERON:0002020!7.10e-09!34;UBERON:0003528!7.10e-09!34;UBERON:0003056!1.10e-08!61;UBERON:0003075!1.42e-08!86;UBERON:0007284!1.42e-08!86;UBERON:0001869!2.95e-08!32;UBERON:0002616!3.04e-08!59;UBERON:0002791!4.14e-08!33;UBERON:0001893!4.26e-08!34;UBERON:0000924!1.01e-07!173;UBERON:0006601!1.01e-07!173;UBERON:0000956!7.86e-07!25;UBERON:0000203!7.86e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;5.73e-08;34!UBERON:0002020;5.73e-08;34!UBERON:0002791;6.34e-08;32!UBERON:0002780;6.53e-08;41!UBERON:0001890;6.53e-08;41!UBERON:0001869;7.76e-08;32!UBERON:0001893;4.25e-07;34!UBERON:0000956;7.22e-07;25!UBERON:0000203;7.22e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.68e-16,89;UBERON:0001017,7.40e-14,81;UBERON:0002346,3.88e-11,86;UBERON:0001049,1.05e-10,56;UBERON:0005068,1.05e-10,56;UBERON:0006241,1.05e-10,56;UBERON:0007135,1.05e-10,56;UBERON:0002780,2.34e-10,41;UBERON:0001890,2.34e-10,41;UBERON:0003080,2.34e-10,41;UBERON:0006240,2.34e-10,41;UBERON:0000955,7.76e-10,68;UBERON:0006238,7.76e-10,68;UBERON:0000073,9.09e-10,53;UBERON:0002616,9.09e-10,53;UBERON:0003075,1.99e-09,82;UBERON:0007284,1.99e-09,82;UBERON:0003056,2.67e-09,61;UBERON:0011216,4.05e-09,223;UBERON:0003528,7.10e-09,34;UBERON:0002020,7.10e-09,34;UBERON:0002791,2.13e-08,32;UBERON:0001869,2.95e-08,32;UBERON:0001893,4.26e-08,34;UBERON:0004121,5.08e-08,171;UBERON:0000924,5.08e-08,171;UBERON:0006601,5.08e-08,171;UBERON:0000956,7.86e-07,25;UBERON:0000203,7.86e-07,25 | |||
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| ||
|short_description=p1@RPAIN | |||
}} | }} |
Latest revision as of 06:47, 16 September 2015
Short description: | p1@RPAIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPAIN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327154_5end |
EntrezGene: | RPAIN |
HGNC: | 28641 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.25e-09 | 52 |
lymphocyte | 1.41e-08 | 53 |
common lymphoid progenitor | 1.41e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.68e-16 | 89 |
central nervous system | 7.40e-14 | 81 |
neurectoderm | 3.88e-11 | 86 |
neural tube | 1.05e-10 | 56 |
neural rod | 1.05e-10 | 56 |
future spinal cord | 1.05e-10 | 56 |
neural keel | 1.05e-10 | 56 |
regional part of forebrain | 2.34e-10 | 41 |
forebrain | 2.34e-10 | 41 |
anterior neural tube | 2.34e-10 | 41 |
future forebrain | 2.34e-10 | 41 |
brain | 7.76e-10 | 68 |
future brain | 7.76e-10 | 68 |
regional part of nervous system | 9.09e-10 | 53 |
regional part of brain | 9.09e-10 | 53 |
neural plate | 1.99e-09 | 82 |
presumptive neural plate | 1.99e-09 | 82 |
pre-chordal neural plate | 2.67e-09 | 61 |
organ system subdivision | 4.05e-09 | 223 |
brain grey matter | 7.10e-09 | 34 |
gray matter | 7.10e-09 | 34 |
regional part of telencephalon | 2.13e-08 | 32 |
cerebral hemisphere | 2.95e-08 | 32 |
telencephalon | 4.26e-08 | 34 |
ectoderm-derived structure | 5.08e-08 | 171 |
ectoderm | 5.08e-08 | 171 |
presumptive ectoderm | 5.08e-08 | 171 |
cerebral cortex | 7.86e-07 | 25 |
pallium | 7.86e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.09e-10 | 235 |
disease of cellular proliferation | 1.34e-10 | 239 |
cell type cancer | 2.92e-09 | 143 |
neuroectodermal tumor | 5.96e-07 | 10 |