FFCP PHASE1:Hg19::chr3:157251383..157251442,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79674 | |EntrezGene=79674 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25735 | |HGNC=25735 | ||
|TSSclassifier=strong | |||
|UniProt=C9J4U8,F8WBQ3,F8WBD3,C9IZY4,C9JRT0,C9J379 | |UniProt=C9J4U8,F8WBQ3,F8WBD3,C9IZY4,C9JRT0,C9J379 | ||
|association_with_transcript=0bp_to_ENST00000461299,ENST00000473907,ENST00000475050,ENST00000479987,ENST00000487753,ENST00000489602_5end | |association_with_transcript=0bp_to_ENST00000461299,ENST00000473907,ENST00000475050,ENST00000479987,ENST00000487753,ENST00000489602_5end | ||
|cluster_id=chr3:157251383..157251442,- | |||
|description=CAGE_peak_1_at_VEPH1_5end | |description=CAGE_peak_1_at_VEPH1_5end | ||
|id=chr3:157251383..157251442,- | |id=chr3:157251383..157251442,- | ||
|ontology_enrichment_celltype=CL:0000055!1.42e-39!180;CL:0000222!5.81e-33!119;CL:0000680!7.03e-23!57;CL:0000056!7.03e-23!57;CL:0000355!7.03e-23!57;CL:0000187!1.40e-21!54;CL:0000057!4.95e-21!75;CL:0000144!7.67e-20!625;CL:0000183!7.73e-20!59;CL:0000359!4.00e-19!32;CL:0002371!5.83e-19!591;CL:0000192!1.52e-18!42;CL:0000514!1.52e-18!42;CL:0000393!1.09e-17!60;CL:0000211!1.09e-17!60;CL:0000220!1.13e-17!246;CL:0002321!4.28e-17!248;CL:0000012!7.00e-16!682;CL:0000548!1.04e-15!679;CL:0000004!1.04e-15!679;CL:0000255!1.04e-15!679;CL:0000003!2.01e-13!722;CL:0002139!1.07e-12!24;CL:0000071!5.86e-12!18;CL:0002546!5.86e-12!18;CL:0002620!2.21e-11!23;CL:0000213!6.97e-11!57;CL:0000215!6.97e-11!57;CL:0000048!9.10e-11!430;CL:0000723!3.99e-10!436;CL:0000034!1.63e-09!444;CL:0000115!2.08e-09!35;CL:0002078!7.00e-09!44;CL:0002494!7.64e-09!16;CL:0002539!9.38e-08!10;CL:1000413!1.01e-07!9 | |ontology_enrichment_celltype=CL:0000055!1.42e-39!180;CL:0000222!5.81e-33!119;CL:0000680!7.03e-23!57;CL:0000056!7.03e-23!57;CL:0000355!7.03e-23!57;CL:0000187!1.40e-21!54;CL:0000057!4.95e-21!75;CL:0000144!7.67e-20!625;CL:0000183!7.73e-20!59;CL:0000359!4.00e-19!32;CL:0002371!5.83e-19!591;CL:0000192!1.52e-18!42;CL:0000514!1.52e-18!42;CL:0000393!1.09e-17!60;CL:0000211!1.09e-17!60;CL:0000220!1.13e-17!246;CL:0002321!4.28e-17!248;CL:0000012!7.00e-16!682;CL:0000548!1.04e-15!679;CL:0000004!1.04e-15!679;CL:0000255!1.04e-15!679;CL:0000003!2.01e-13!722;CL:0002139!1.07e-12!24;CL:0000071!5.86e-12!18;CL:0002546!5.86e-12!18;CL:0002620!2.21e-11!23;CL:0000213!6.97e-11!57;CL:0000215!6.97e-11!57;CL:0000048!9.10e-11!430;CL:0000723!3.99e-10!436;CL:0000034!1.63e-09!444;CL:0000115!2.08e-09!35;CL:0002078!7.00e-09!44;CL:0002494!7.64e-09!16;CL:0002539!9.38e-08!10;CL:1000413!1.01e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.60e-21;32!CL:0000192;1.71e-14;43!CL:0002139;4.55e-14;24!CL:0002620;4.87e-13;23!CL:0000071;7.33e-13;18!CL:0000187;1.62e-12;55!CL:0000393;1.36e-10;61!CL:0000211;1.36e-10;61!CL:0002494;3.91e-10;16!CL:0000115;9.60e-10;36!CL:0000057;3.27e-09;73!CL:0002539;7.24e-09;10!CL:1000413;7.73e-09;9!CL:0000213;1.89e-07;58!CL:0000215;1.89e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.72e-34,121;CL:0000680,9.60e-25,58;CL:0000056,9.60e-25,58;CL:0000355,9.60e-25,58;CL:0000187,3.18e-23,55;CL:0000057,5.45e-23,76;CL:0000359,2.72e-22,32;CL:0000393,1.16e-19,61;CL:0000211,1.16e-19,61;CL:0000192,1.49e-19,43;CL:0000514,1.49e-19,43;CL:0000048,8.55e-17,427;CL:0000723,9.43e-16,433;CL:0002321,1.90e-15,250;CL:0000034,9.70e-15,441;CL:0002139,4.74e-14,24;CL:0002620,3.79e-13,23;CL:0000071,6.65e-13,18;CL:0002546,6.65e-13,18;CL:0000115,2.64e-11,36;CL:0000213,2.99e-11,58;CL:0000215,2.99e-11,58;CL:0002494,3.73e-10,16;CL:0002078,6.07e-09,45;CL:0002539,7.15e-09,10;CL:1000413,7.84e-09,9 | |||
|ontology_enrichment_development_v019=CL:0000514;1.71e-14;43!CL:0000355;4.08e-13;58!CL:0002546;7.33e-13;18!CL:0000222;2.33e-08;121 | |||
|ontology_enrichment_disease=DOID:2394!6.14e-08!14 | |ontology_enrichment_disease=DOID:2394!6.14e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.78e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.82e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004535!6.72e-34!110;UBERON:0001009!5.17e-33!113;UBERON:0002049!1.80e-29!79;UBERON:0007798!1.80e-29!79;UBERON:0004872!1.74e-28!84;UBERON:0001981!1.54e-27!60;UBERON:0007500!1.54e-27!60;UBERON:0004537!1.54e-27!60;UBERON:0006965!1.54e-27!60;UBERON:0000055!7.95e-27!69;UBERON:0000914!1.23e-26!83;UBERON:0002329!1.23e-26!83;UBERON:0003077!1.23e-26!83;UBERON:0003059!1.23e-26!83;UBERON:0007282!1.23e-26!83;UBERON:0009618!1.23e-26!83;UBERON:0007285!1.23e-26!83;UBERON:0001637!3.12e-26!42;UBERON:0003509!3.12e-26!42;UBERON:0004572!3.12e-26!42;UBERON:0004290!1.00e-24!70;UBERON:0000486!2.01e-23!82;UBERON:0001134!5.53e-21!61;UBERON:0002036!5.53e-21!61;UBERON:0003082!5.53e-21!61;UBERON:0004573!3.33e-20!33;UBERON:0004571!3.33e-20!33;UBERON:0002385!1.77e-19!63;UBERON:0001015!1.77e-19!63;UBERON:0000383!1.77e-19!63;UBERON:0000490!9.60e-19!138;UBERON:0003914!1.84e-18!118;UBERON:0005256!1.36e-15!143;UBERON:0000947!5.28e-13!21;UBERON:0010191!5.28e-13!21;UBERON:0001986!5.86e-12!18;UBERON:0004638!5.86e-12!18;UBERON:0004852!5.86e-12!18;UBERON:0000487!5.43e-11!22;UBERON:0006914!2.51e-10!25;UBERON:0002199!1.94e-09!45;UBERON:0002416!1.94e-09!45;UBERON:0000119!3.48e-09!312;UBERON:0000483!3.99e-09!309;UBERON:0002100!6.39e-09!216;UBERON:0003102!3.69e-08!95;UBERON:0002097!5.89e-08!40;UBERON:0004237!9.38e-08!10;UBERON:0004695!9.38e-08!10;UBERON:0002111!9.38e-08!10;UBERON:0004178!9.38e-08!10;UBERON:0003915!1.01e-07!9;UBERON:0004700!1.01e-07!9;UBERON:0001917!1.01e-07!9 | |ontology_enrichment_uberon=UBERON:0004535!6.72e-34!110;UBERON:0001009!5.17e-33!113;UBERON:0002049!1.80e-29!79;UBERON:0007798!1.80e-29!79;UBERON:0004872!1.74e-28!84;UBERON:0001981!1.54e-27!60;UBERON:0007500!1.54e-27!60;UBERON:0004537!1.54e-27!60;UBERON:0006965!1.54e-27!60;UBERON:0000055!7.95e-27!69;UBERON:0000914!1.23e-26!83;UBERON:0002329!1.23e-26!83;UBERON:0003077!1.23e-26!83;UBERON:0003059!1.23e-26!83;UBERON:0007282!1.23e-26!83;UBERON:0009618!1.23e-26!83;UBERON:0007285!1.23e-26!83;UBERON:0001637!3.12e-26!42;UBERON:0003509!3.12e-26!42;UBERON:0004572!3.12e-26!42;UBERON:0004290!1.00e-24!70;UBERON:0000486!2.01e-23!82;UBERON:0001134!5.53e-21!61;UBERON:0002036!5.53e-21!61;UBERON:0003082!5.53e-21!61;UBERON:0004573!3.33e-20!33;UBERON:0004571!3.33e-20!33;UBERON:0002385!1.77e-19!63;UBERON:0001015!1.77e-19!63;UBERON:0000383!1.77e-19!63;UBERON:0000490!9.60e-19!138;UBERON:0003914!1.84e-18!118;UBERON:0005256!1.36e-15!143;UBERON:0000947!5.28e-13!21;UBERON:0010191!5.28e-13!21;UBERON:0001986!5.86e-12!18;UBERON:0004638!5.86e-12!18;UBERON:0004852!5.86e-12!18;UBERON:0000487!5.43e-11!22;UBERON:0006914!2.51e-10!25;UBERON:0002199!1.94e-09!45;UBERON:0002416!1.94e-09!45;UBERON:0000119!3.48e-09!312;UBERON:0000483!3.99e-09!309;UBERON:0002100!6.39e-09!216;UBERON:0003102!3.69e-08!95;UBERON:0002097!5.89e-08!40;UBERON:0004237!9.38e-08!10;UBERON:0004695!9.38e-08!10;UBERON:0002111!9.38e-08!10;UBERON:0004178!9.38e-08!10;UBERON:0003915!1.01e-07!9;UBERON:0004700!1.01e-07!9;UBERON:0001917!1.01e-07!9 | ||
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| ||
|short_description=p1@VEPH1 | |short_description=p1@VEPH1 | ||
}} | }} |
Latest revision as of 08:01, 16 September 2015
Short description: | p1@VEPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VEPH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461299, ENST00000473907, ENST00000475050, ENST00000479987, ENST00000487753, ENST00000489602_5end |
EntrezGene: | VEPH1 |
HGNC: | 25735 |
UniProt: | C9J4U8F8WBQ3F8WBD3C9IZY4C9JRT0C9J379 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.72e-34 | 121 |
muscle precursor cell | 9.60e-25 | 58 |
myoblast | 9.60e-25 | 58 |
multi-potent skeletal muscle stem cell | 9.60e-25 | 58 |
muscle cell | 3.18e-23 | 55 |
fibroblast | 5.45e-23 | 76 |
vascular associated smooth muscle cell | 2.72e-22 | 32 |
electrically responsive cell | 1.16e-19 | 61 |
electrically active cell | 1.16e-19 | 61 |
smooth muscle cell | 1.49e-19 | 43 |
smooth muscle myoblast | 1.49e-19 | 43 |
multi fate stem cell | 8.55e-17 | 427 |
somatic stem cell | 9.43e-16 | 433 |
embryonic cell | 1.90e-15 | 250 |
stem cell | 9.70e-15 | 441 |
endothelial cell of vascular tree | 4.74e-14 | 24 |
skin fibroblast | 3.79e-13 | 23 |
blood vessel endothelial cell | 6.65e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.65e-13 | 18 |
endothelial cell | 2.64e-11 | 36 |
lining cell | 2.99e-11 | 58 |
barrier cell | 2.99e-11 | 58 |
cardiocyte | 3.73e-10 | 16 |
meso-epithelial cell | 6.07e-09 | 45 |
aortic smooth muscle cell | 7.15e-09 | 10 |
endothelial cell of artery | 7.84e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.82e-09 | 14 |