FFCP PHASE1:Hg19::chr10:134145735..134145746,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80313 | |EntrezGene=80313 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29346 | |HGNC=29346 | ||
|TSSclassifier=strong | |||
|UniProt=B3KUK5,Q9C0I9 | |UniProt=B3KUK5,Q9C0I9 | ||
|association_with_transcript=0bp_to_NM_001143757,uc001lli.2_5end | |association_with_transcript=0bp_to_NM_001143757,uc001lli.2_5end | ||
|cluster_id=chr10:134145735..134145746,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_8_at_LRRC27_5end | |description=CAGE_peak_8_at_LRRC27_5end | ||
|id=chr10:134145735..134145746,+ | |id=chr10:134145735..134145746,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.70e-40;1!UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10!UBERON:0003056;1.96e-14;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.94e-07!94;UBERON:0001016!5.94e-07!94;UBERON:0002780!8.85e-07!41;UBERON:0001890!8.85e-07!41;UBERON:0006240!8.85e-07!41 | |ontology_enrichment_uberon=UBERON:0000073!5.94e-07!94;UBERON:0001016!5.94e-07!94;UBERON:0002780!8.85e-07!41;UBERON:0001890!8.85e-07!41;UBERON:0006240!8.85e-07!41 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.70e-40;1!UBERON:0001785;2.70e-40;1!UBERON:0002464;2.70e-40;1!UBERON:0004904;2.70e-40;1!UBERON:0001021;2.70e-40;1!UBERON:0000007;6.30e-21;2!UBERON:0003714;6.30e-21;2!UBERON:0005162;6.30e-21;2!UBERON:0000122;6.30e-21;2!UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0003296;3.60e-11;4!UBERON:0010133;3.60e-11;4!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0001894;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.30e-40,1;UBERON:0001785,3.30e-40,1;UBERON:0002464,3.30e-40,1;UBERON:0004904,3.30e-40,1;UBERON:0001021,3.30e-40,1;UBERON:0003902,3.30e-40,1;UBERON:0005425,3.30e-40,1;UBERON:0000007,5.70e-21,2;UBERON:0000473,6.64e-21,8;UBERON:0003714,6.96e-21,2;UBERON:0005162,6.96e-21,2;UBERON:0000122,6.96e-21,2;UBERON:0003135,1.62e-15,11;UBERON:0003296,3.42e-11,4;UBERON:0010133,3.42e-11,4;UBERON:0001781,3.79e-11,4;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0000966,7.25e-08,6;UBERON:0005388,7.25e-08,6;UBERON:0001802,7.25e-08,6;UBERON:0001894,6.04e-07,7;UBERON:0006222,6.04e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0.387336002901508,0.142169232487422,0,0,0,0,0,0.32389366601898,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,2.61958150995425,0,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.976248230192678,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0.30648779579902,0,0,0.179389635688862,0,0,0,0.103052529238439,0.515281080091258,0,0,0,0.252433774244115,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0.858486162094873,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.224170287987055,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0.0920809889358963,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.183138929636687,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0.0890320356467374,0.165284915360978,0,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0.16480387422676,0,0,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0.10893846351899,0,0.0769502585037971,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0.364909578431332,0.19566461893209,0.485560759068186,0,0,0.30607276163049,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0.253243183823515,0.195551382734803,0.0801588202515337,0.213452994739353,0,0.432271251462318,0.114536596165916,0,0,0.124252535565433,0.235694034616795,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.196854963029498,0.254019996197353,0,0.136203406111576,0,0,0,0,0,0.182248669974074,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0.113312091520126,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0.414239055347196,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0.332787154610557,0.248385611765534,0,0.124980407962107,0.151649117541648,0,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0.438568099157414,0,0,0.337884881306145,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0.516644938982447,0,0.184105950251841,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0.0675375846183947,0.781078098613847,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,1.82089681270989,0.682986574053893,0,0.115233987555779,0.171488009437418,0.135939465953663,0,0.118193840883968,0,0,0.157115589916002,0,0,0.215927591218621,0.47775168788705,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0.098150233615243,0.121917924982269,0,0.102662806856247,0,0,0,0.596852325484105,0.237840181555137,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0.109265571963696,0,0,0,0,0,4.77405798774908,5.62724673327975,0,0,0,0.476128862927481,0,0.248298857183432,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0.122241444182866,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0.387336002901508,0.142169232487422,0,0,0,0,0,0.32389366601898,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,2.61958150995425,0,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.976248230192678,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0.30648779579902,0,0,0.179389635688862,0,0,0,0.103052529238439,0.515281080091258,0,0,0,0.252433774244115,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0.858486162094873,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.224170287987055,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0.0920809889358963,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.183138929636687,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0.0890320356467374,0.165284915360978,0,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0.16480387422676,0,0,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0.10893846351899,0,0.0769502585037971,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0.364909578431332,0.19566461893209,0.485560759068186,0,0,0.30607276163049,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0.253243183823515,0.195551382734803,0.0801588202515337,0.213452994739353,0,0.432271251462318,0.114536596165916,0,0,0.124252535565433,0.235694034616795,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.196854963029498,0.254019996197353,0,0.136203406111576,0,0,0,0,0,0.182248669974074,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0.113312091520126,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0.414239055347196,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0.332787154610557,0.248385611765534,0,0.124980407962107,0.151649117541648,0,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0.438568099157414,0,0,0.337884881306145,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0.516644938982447,0,0.184105950251841,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0.0675375846183947,0.781078098613847,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,1.82089681270989,0.682986574053893,0,0.115233987555779,0.171488009437418,0.135939465953663,0,0.118193840883968,0,0,0.157115589916002,0,0,0.215927591218621,0.47775168788705,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0.098150233615243,0.121917924982269,0,0.102662806856247,0,0,0,0.596852325484105,0.237840181555137,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0.109265571963696,0,0,0,0,0,4.77405798774908,5.62724673327975,0,0,0,0.476128862927481,0,0.248298857183432,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0.122241444182866,0,0.665756774185513,0,0 | ||
|short_description=p8@LRRC27 | |short_description=p8@LRRC27 | ||
}} | }} |
Latest revision as of 03:53, 17 September 2015
Short description: | p8@LRRC27 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LRRC27_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_NM_001143757, uc001lli.2_5end |
EntrezGene: | LRRC27 |
HGNC: | 29346 |
UniProt: | B3KUK5Q9C0I9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.30e-40 | 1 |
cranial nerve | 3.30e-40 | 1 |
nerve trunk | 3.30e-40 | 1 |
nerve connecting eye with brain | 3.30e-40 | 1 |
nerve | 3.30e-40 | 1 |
retinal neural layer | 3.30e-40 | 1 |
presumptive neural retina | 3.30e-40 | 1 |
pituitary gland | 5.70e-21 | 2 |
testis | 6.64e-21 | 8 |
neural tissue | 6.96e-21 | 2 |
multi cell component structure | 6.96e-21 | 2 |
neuron projection bundle | 6.96e-21 | 2 |
male reproductive organ | 1.62e-15 | 11 |
gland of diencephalon | 3.42e-11 | 4 |
neuroendocrine gland | 3.42e-11 | 4 |
layer of retina | 3.79e-11 | 4 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
retina | 7.25e-08 | 6 |
photoreceptor array | 7.25e-08 | 6 |
posterior segment of eyeball | 7.25e-08 | 6 |
diencephalon | 6.04e-07 | 7 |
future diencephalon | 6.04e-07 | 7 |