FFCP PHASE1:Hg19::chr5:176074396..176074417,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26262 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13594 | |||
|TSSclassifier=strong | |||
|UniProt=Q96FV3,C9J7R4 | |||
|association_with_transcript=8bp_to_ENST00000310032,ENST00000405525,NM_001006616,NM_012171,NM_130465,uc003mes.3,uc003met.2,uc003meu.2,uc003mev.2,uc003mew.2_5end | |||
|cluster_id=chr5:176074396..176074417,+ | |||
|description=CAGE_peak_2_at_TSPAN17_5end | |||
|id=chr5:176074396..176074417,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!7.71e-11!32;UBERON:0000064!2.88e-10!219;UBERON:0002020!4.48e-10!34;UBERON:0003528!4.48e-10!34;UBERON:0001893!1.04e-09!34;UBERON:0001049!1.09e-09!57;UBERON:0005068!1.09e-09!57;UBERON:0006241!1.09e-09!57;UBERON:0007135!1.09e-09!57;UBERON:0002780!1.79e-09!41;UBERON:0001890!1.79e-09!41;UBERON:0006240!1.79e-09!41;UBERON:0000956!2.82e-09!25;UBERON:0000203!2.82e-09!25;UBERON:0003075!2.92e-09!86;UBERON:0007284!2.92e-09!86;UBERON:0002791!2.94e-09!33;UBERON:0002619!3.18e-09!22;UBERON:0002616!3.49e-09!59;UBERON:0003080!7.67e-09!42;UBERON:0002346!1.81e-08!90;UBERON:0001017!2.03e-08!82;UBERON:0005743!2.64e-08!86;UBERON:0000955!3.29e-08!69;UBERON:0006238!3.29e-08!69;UBERON:0001950!3.41e-08!20;UBERON:0003056!9.25e-08!61;UBERON:0000073!1.73e-07!94;UBERON:0001016!1.73e-07!94;UBERON:0004121!8.84e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.71e-10;32!UBERON:0002791;2.20e-09;32!UBERON:0000956;2.94e-09;25!UBERON:0000203;2.94e-09;25!UBERON:0002619;5.65e-09;22!UBERON:0003528;8.74e-09;34!UBERON:0002020;8.74e-09;34!UBERON:0001893;1.41e-08;34!UBERON:0001950;6.77e-08;20!UBERON:0002780;1.83e-07;41!UBERON:0001890;1.83e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.51e-11,53;UBERON:0002616,3.51e-11,53;UBERON:0001869,4.97e-11,32;UBERON:0010371,5.83e-11,104;UBERON:0001049,1.63e-10,56;UBERON:0005068,1.63e-10,56;UBERON:0006241,1.63e-10,56;UBERON:0007135,1.63e-10,56;UBERON:0003528,3.00e-10,34;UBERON:0002020,3.00e-10,34;UBERON:0002791,4.15e-10,32;UBERON:0001893,9.69e-10,34;UBERON:0002780,1.13e-09,41;UBERON:0001890,1.13e-09,41;UBERON:0003080,1.13e-09,41;UBERON:0006240,1.13e-09,41;UBERON:0003075,1.65e-09,82;UBERON:0007284,1.65e-09,82;UBERON:0000956,1.96e-09,25;UBERON:0000203,1.96e-09,25;UBERON:0002619,2.21e-09,22;UBERON:0001017,4.81e-09,81;UBERON:0000955,6.80e-09,68;UBERON:0006238,6.80e-09,68;UBERON:0002346,1.36e-08,86;UBERON:0003056,1.76e-08,61;UBERON:0001950,2.49e-08,20;UBERON:0001016,4.78e-08,89 | |||
|phase1_expression=1.2717486548939,1.2846031433459,0.986680828671798,3.00219895059391,1.34088328328186,2.61701557230111,0,0.631719873426831,2.08948502559871,3.68600904752263,17.4450291993107,3.27662058195258,5.27533956456907,1.36142988256051,0.331397375727916,0,1.20538905604795,0.730310090387373,1.46379839637152,3.32426856807327,2.44800829493104,2.5076377718247,2.28988789704845,2.18999080116615,2.25976751270645,0.916960868975415,0.985207073399349,0.708397031823113,4.72037132218685,2.68680578668049,2.63187409637329,3.67768489791571,5.12050061923025,9.98335827450327,1.39440961044543,0.853015394924529,0.293600439334847,3.87796785972314,0.802177789880567,3.03815219002193,3.13481663935894,2.26725566213286,4.12120908214698,2.61716829803216,1.51150377475524,1.21292030593908,1.16214518452842,2.05583944010913,1.54853185447552,6.90461741573161,7.94098190240212,7.33094912654614,0.344745680736619,0,2.70852973188684,1.69418105588344,0.818718450173537,1.12361742222542,1.83650335422542,0.320929027076094,2.55734850319616,10.2253903057882,10.5715738539465,8.09827026012119,0.580418477257168,0,1.24564449799115,10.80369260604,6.77927793946262,8.03598725408932,0.605399502633369,1.47311054395026,1.26584954976354,1.26753171787165,1.06302149982522,1.04829322754188,2.2465726229299,2.10247649978109,0.803627933485401,3.13514018115373,1.39241674039363,1.27864907635244,0,0.546138611262131,0.889509253863555,0.853460445133014,2.00197993518006,1.72425731986345,0.661044872784862,0.954053754535364,2.27685187643779,1.17447437874188,0.764546456250458,0,0,0.263384084775077,1.180258620683,2.75107533924415,1.85041349099558,3.17654341242288,1.62961133316795,2.8406868344084,1.94826728407911,2.22820913770347,1.76763544484902,2.65840673500345,1.35401931882508,3.45846563259323,3.51160238411671,5.91976456573234,2.21080014228679,1.44901542867526,2.07601188426885,2.1403266247177,1.04535523804977,3.39928028092699,2.68254345521345,3.09264700934367,1.26509846009751,1.91139248594458,2.60433381542567,3.8018081777935,3.01150238155546,2.68771883424279,8.74515085866421,2.8413270245282,3.28451198768419,2.82249440514625,2.67440195783507,1.73789284659359,0,0,2.04580098949649,3.61439152384566,1.00267582127178,1.44846518960824,0,0,1.32348744029695,1.33037638477538,1.40535657109002,1.76821751921912,8.01449634243593,5.93255108455087,4.21911611751088,4.17911369518241,4.12169677608482,0.715471872916026,0.571994910780128,0.371457501329565,1.98762407366705,0.860234595106124,3.12426451446835,0.56530794192401,2.51699661725944,4.12677062910101,2.71693456497854,2.32575083252396,2.49036383880697,1.33888245105868,4.02829317109147,2.28081631715554,4.14905497831888,2.20597848207521,3.24056779152704,1.69669483739752,0.898117490504679,1.46394924628319,1.53316637465883,2.84779697870439,2.38162267109529,0,0,4.36094052142534,1.49091585508596,0.886413581652058,1.72131935057184,2.0078563452417,2.12801029319014,1.12135520028461,1.06748995729705,3.94668077467456,0.933633106199299,1.34710672069688,1.47115712802113,1.51357427644931,1.15235184896,1.87457145467037,1.5608003841516,2.2818872861778,1.19558944441441,0.939475989150119,0.647491777472526,1.40450806702248,0.408308342509787,1.35117749042945,0.723280468230358,0,0.989067717114227,5.46096817162816,1.43723628363248,1.0100166837244,1.12606667884768,1.10825646193673,0.438977620880838,0.919463387397059,1.50238058906597,2.49550802952046,0.717558542755448,0.640672166455702,0.847727604638247,0.900273288253207,0.824420233907511,1.8034837803194,1.30281799432113,1.35021065793013,1.07180705677318,1.00973509697646,0.736399189138395,2.10139873864455,1.06502877754984,1.30977727695932,1.52604533079439,2.70565194428616,3.81844568827169,4.01526433544605,0.975789649036763,0.927708378250397,0.929551542956147,2.38420426535352,1.7662459561294,1.82488679537915,1.56449532329816,2.57296375277154,0,0.464367928031979,0.721879481669586,1.53798840051797,2.52877035117153,1.20505514941741,2.09558548191549,2.17879444092406,1.89816495288877,2.56179485504312,1.56977172100277,2.69323009862473,3.69077727312324,4.20725321410337,2.4694440679884,2.94017422771084,1.26755034821831,0,1.77236972004421,1.7658523976586,1.35287282397425,2.74508496477641,2.52425656439839,6.74410519545717,4.42327478611176,2.40729957412177,1.62904152655162,2.07986957055916,1.44331342025273,2.78232971940184,0.587043471179108,3.89789408954899,3.70388410061289,3.04406643575357,3.1608175918371,10.3018339451385,3.20082107913617,3.7440682422278,2.97262324577457,0.93733833986777,2.35174979478403,1.55952606966625,1.97028749946266,2.3250715081117,4.60059214998253,0,1.05658120815871,0.207328115540772,0.720599767084807,0.88369703398466,5.52431680341871,4.58386110669933,3.51652341630141,5.13217338068116,4.01027221542962,4.20480280981484,7.71731368102561,3.36393253036082,1.74384027533312,1.24675085895615,1.03417372606222,7.15312891703765,0.845302752556,2.12750493267896,3.12022310734098,2.31486636835928,8.5109479213967,2.39779961114489,1.28680194292333,1.62786481617433,0.823240336780769,2.28015329005615,0.355391948742546,0,1.50719688529793,0.871533458600294,1.69954085009497,2.43247561282381,4.52031382288914,4.21667878966063,1.19812427745791,1.14861935834114,0,1.59259437334337,1.84928690295345,2.32779252211864,3.58672460779287,1.57624608161542,1.94064817373566,1.92514554419623,1.27047312111232,5.20559415430487,3.86644406388848,5.69555302136786,5.74144876487847,0,0,0.828831026872071,0.736148950314839,1.50051156317903,0.542530047399471,4.15941723061614,1.60586089917446,1.89242898040722,1.28855556491985,2.70851489754947,0,2.0694614258501,1.32845119707087,1.47495334833363,0.521301686808497,5.48243240895674,2.74514739048685,1.24060815673732,1.2942852049117,1.60091336705167,10.3063374291728,4.99306318531491,6.95497674658265,1.48864684691266,0.460385919864187,0.280660094433074,1.15325234330131,2.04682899626681,1.44768529029247,1.48418066444991,0.616838775210622,1.42049380250502,0.98552587216571,0.519254429183621,1.39452454151951,1.0877350463246,1.80455823272956,6.26150724764095,0.68888668898764,0.728364672026868,2.09799063935079,4.06079651616671,2.92658280996776,6.27479815341484,7.30696123266303,1.68882606228601,7.96133688496276,2.89159298970077,2.37507507712353,1.54227252690289,3.52230368807009,5.51858751240339,5.60727800699084,5.81753206250107,2.23874754722178,4.16593765627276,3.39866086332371,1.53870075069834,0.984043937099117,3.25378394664303,1.03041011647722,1.55668090191184,2.14524699793529,3.44559322797703,7.15066270640173,1.6068392984416,2.51343867559517,0.924291702687866,1.07452572308291,0.551346289938122,0.644521469209642,1.74020032697074,1.36362603865761,2.31483292681517,1.4875642382488,3.65161127993702,2.29702882490251,2.6301023022443,0.464845549297286,1.88887408098384,2.0911118104818,0.308033580176089,1.59691809095107,0,3.33583594387056,1.14499909393593,1.116475108079,2.21465597303108,1.33441135746677,2.81487570442467,0,4.13664222303718,2.35484592059769,1.61885211824983,1.64722217841633,2.12062324222236,1.2130948894399,3.17020642346017,2.94880919367287,3.41343617362713,1.94970791705028,2.11300293513511,1.9109987597118,1.69686518344455,6.78048699721457,4.41092274836899,3.3171948762061,1.75380354101505,2.31510213706675,1.9676842561399,1.21746226177622,3.0982349809975,2.25356482025793,1.43411352204052,2.35797698431491,1.07001315444375,0.354761064070598,2.9555068941673,0.987884678879706,1.13841952129715,4.19921664293979,2.79044126903985,6.70302275535787,3.26672954583968,0.847294206991012,4.3050537267123,6.73885902670502,8.42517291719684,4.59446800413919,3.55213326462519,2.29391162142713,0.569647187174163,2.1440859791201,0.822724546172388,0,0.540031437238115,0.79312517629427,1.49553699578462,2.88743956579008,2.45040215981032,0,0.144269212976445,0.497992903438899,1.27541018183058,0.798317485731266,0.383010740264733,0,0.649243880549111,1.40398589056729,2.73881614839831,0.313359791546046,2.50634477090067,1.01575066680962,0.963528450622197,1.21079824314629,0.851692475380653,0.343505344755765,2.45792611446766,2.01308497103174,2.83643540910244,0.976940477010201,0,1.23087398947712,2.43410110628385,0,0,0.18714054040822,0.879049075631364,2.18448939149124,1.33732061132974,0.852408440419239,4.29740072527842,5.3453642549875,3.37876772309155,8.94732882989668,4.3607519087259,1.33570446027487,3.29607748453519,1.26675244876796,0.398495976502139,1.38141957765574,0.755798243562828,0.511343412510774,0.123084805461069,2.17727711363265,1.70749867179921,1.61119057208048,1.53471711068062,0.493217028184668,4.7896618469388,0,4.84666373047609,2.87581104301739,7.98455192004777,2.3438498497671,3.84823999983261,0.724999575434793,1.82069517256799,0.508507300585533,1.18193840883968,2.41320361269025,1.74962768029953,0.868124974666461,4.42870692906919,4.34147179051469,10.6807215421958,4.64432891711143,5.31985714116385,2.63262476584767,3.48603083260768,1.67308493134324,0.923403102045565,1.25336261431701,3.4584585658209,2.87224462111271,1.19512109114209,3.82801391678303,3.29751336246704,2.66517388009317,1.02193298195737,0.941881538370149,0.498635045700469,0,1.9606253431774,1.1747511088309,1.3282761290693,0.953619473882272,2.10998064528027,0.652931232636591,0.848118428603645,0.649165919226273,0.995261931078505,0.619202951523374,1.22206028986725,1.18608451472249,1.35920332841153,1.14864144456001,0.876214728748802,3.21031058919516,3.51396668588009,1.094728735294,1.17398771359254,2.18502341580683,1.18375320854817,2.41981432097328,3.97894590119637,2.46427660551103,0.60129367765797,1.34794648816421,1.32930774541437,5.29587129400798,3.7671950208867,2.38944859545918,1.70765727617876,3.32819215231533,1.21491816834592,0.881931576729399,3.5694274697965,1.39781334593624,2.57979048707425,1.74161396320353,1.60796497589608,1.47807822695777,1.93978032976839,0.264768380074501,0.90392296312213,0.548167698587004,1.39100228192093,3.16553979779394,3.12882212375685,0.561111741760736,1.92107695265417,3.39676336289621,0.432271251462318,0.916292769327325,1.02956998717179,0.576219191952599,0.99402028452346,2.12124631155116,3.12579673969312,1.255234155748,1.32597682927218,1.15580235960608,1.20084057741958,2.46429682005587,0,1.28929632425987,1.31443677139657,1.11712960508902,0.687481272035051,1.43574604915363,2.99518500748487,0.858452096273142,1.33902874465124,0.806201669840715,0,0,0.787831823072237,0.741742725430498,0.876246070104404,0.885847333632739,1.77813997338147,6.36183751847443,4.35850899557042,1.12527203925513,1.10031549277787,0.415440338029185,0.899895566206002,2.32140586367385,3.7057229561395,3.01891218839339,1.89133697518076,1.99327434912993,2.00640639386872,1.07572403599707,1.34340638123612,0.714695326373367,0,1.27134268827375,5.97299561929084,2.5926644736038,2.61269888087527,1.19730191562487,0.82092520749339,1.36310417428337,1.92630555584214,0.879313402068495,1.32506888912221,2.71494208359256,1.98348902614035,2.05304205461195,2.11444506695002,1.38823636338003,1.25763444079733,1.65695622138878,2.48083010905975,0.592834895693833,0.730755590285376,0.638341257770182,0.544017803369474,0,0.919036730290385,1.31149052283922,0.157054096250234,2.65820453990096,3.41673541725497,2.3786276834235,0,2.77322628842131,1.55241007353459,0.415045904808692,1.62474530350739,1.06154382279153,1.7127920012698,1.17632909849086,2.81000943484129,1.88397337194073,1.19403842309499,0.701139929541673,2.77402930751307,1.32582103692562,2.0125432140206,0.889811221596536,2.74608082076308,2.7221566277383,0.466311601748341,1.92211694986524,1.75226443880073,2.24901556081802,1.08684069813382,0.829412415681711,2.39257543102195,1.04349012362347,2.40412174395549,3.80805212168795,0,1.63663793282303,2.47044281197723,1.39210127963548,1.99047944349308,2.40016658797892,3.09056134664514,1.34699795506368,0,5.9712147426264,1.50109113962448,3.65392008751296,0.906823702049089,2.08370226891451,1.95789363605174,1.96997725189636,2.47041157728778,1.09642024789354,2.12026975135057,0.578742114812744,1.01365464391844,1.53744911152768,0,1.21543982470953,2.62691028688288,0,0.531459361253452,0.981392365535065,5.56936743038901,1.96618327002975,2.11312123358627,0.999936979274649,0.853533837553127,2.2387947355906,0.567515953566836,1.10463570151104,6.43445735509445,3.73246356019784,1.79052119825112,1.1860729253635,1.72992536041486,0.873677105536111,2.20652288940233,1.48802444071178,0.991486114072017,0.558644917973244,1.90802610392051,0.0788617450012534,0.80057074828547,2.82140754952547,1.2249819094128,2.82608590424422,2.8339315265117,3.35231104020018,3.89721092057435,4.53729053199093,3.94196339046042,2.09918339321406,4.28308260777463,0.88332946650923,0.707818340086442,1.83428598521679,2.19498765685643,1.1441462864015,2.7614397042404,0.596748666348824,1.20336525358812,0.80682027481408,2.34454203369928,0.785720083444267,3.93052602024232,0.591424344868181,4.38994300019565,1.56215619722769,3.30698874401895,3.7415328014405,6.01672289920042,0,0,0.351742488719241,2.04419884223352,1.07140367175657,4.03540466662589,1.82089681270989,4.78090601837725,1.1531308121143,0.460935950223117,1.54339208493677,1.69924332442079,3.94636641377094,1.77290761325952,2.44709084162552,0.863424021355654,3.45654297815204,0.560544326627578,2.73947616152849,1.29556554731173,0.9555033757741,1.92986669276972,0.94808167039636,1.3948971044175,0,4.00855682365126,0.828864656652147,1.87790324803345,1.38251932362818,1.72090943528111,1.41998400876678,1.44862788090568,0,1.3746412112643,1.5510319283216,1.91107787795487,1.11855431797792,0.785201868921944,0.975343399858155,1.29485767437579,2.05325613712494,0,0.485710993059139,1.87151570769685,0.994753875806841,2.02164154321867,0.22589216407792,0.549702583727146,2.11347980993343,1.15761237161917,1.09279780251979,0.470317296361523,0.490296643507811,1.64973582971138,2.1593931382644,1.78227840196252,0.8453114551668,2.20905249094162,2.16163011353663,1.67590508731301,0.399764623699716,1.2498775702396,0.705789743431384,3.37013740094507,0.730336388246517,0,1.29005624836306,1.10440093535229,5.23534474470043,3.9271562130634,2.1161073620616,1.11598505450025,1.84870251452567,1.29787968637137,1.26166424835079,1.52971800749174,1.0135880080915,0,0.26721740526556,0.0918948995348449,0.752122617877125,1.13668047327359,0.267964130156178,0,2.27552590896169,1.49263787330687,1.90451545170992,0.645889098360061,1.48979314310059,1.34558235096736,0.636471582781649,0.606351566874658,0.653150243690884,0.342233301085281,1.81850543139386,1.29099969706817,1.99596213927608,1.54666210360852,1.17400080465487,1.9307228228694,1.52702843581198,2.34640942403454,1.1001729976458,0,1.33151354837103,0.805095174364105,1.60284246151616 | |||
|short_description=p2@TSPAN17 | |||
}} |
Latest revision as of 05:05, 17 September 2015
Short description: | p2@TSPAN17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TSPAN17_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000310032, ENST00000405525, NM_001006616, NM_012171, NM_130465, uc003mes.3, uc003met.2, uc003meu.2, uc003mev.2, uc003mew.2_5end |
EntrezGene: | TSPAN17 |
HGNC: | 13594 |
UniProt: | Q96FV3C9J7R4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.51e-11 | 53 |
regional part of brain | 3.51e-11 | 53 |
cerebral hemisphere | 4.97e-11 | 32 |
ecto-epithelium | 5.83e-11 | 104 |
neural tube | 1.63e-10 | 56 |
neural rod | 1.63e-10 | 56 |
future spinal cord | 1.63e-10 | 56 |
neural keel | 1.63e-10 | 56 |
brain grey matter | 3.00e-10 | 34 |
gray matter | 3.00e-10 | 34 |
regional part of telencephalon | 4.15e-10 | 32 |
telencephalon | 9.69e-10 | 34 |
regional part of forebrain | 1.13e-09 | 41 |
forebrain | 1.13e-09 | 41 |
anterior neural tube | 1.13e-09 | 41 |
future forebrain | 1.13e-09 | 41 |
neural plate | 1.65e-09 | 82 |
presumptive neural plate | 1.65e-09 | 82 |
cerebral cortex | 1.96e-09 | 25 |
pallium | 1.96e-09 | 25 |
regional part of cerebral cortex | 2.21e-09 | 22 |
central nervous system | 4.81e-09 | 81 |
brain | 6.80e-09 | 68 |
future brain | 6.80e-09 | 68 |
neurectoderm | 1.36e-08 | 86 |
pre-chordal neural plate | 1.76e-08 | 61 |
neocortex | 2.49e-08 | 20 |
nervous system | 4.78e-08 | 89 |